Wall clock time and date at job start Tue Mar 31 2020 01:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46979 * 2 1 4 4 C 1.53002 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.09007 * 115.55889 * 29.31331 * 4 3 2 6 6 C 1.52996 * 117.50138 * 243.62296 * 4 3 2 7 7 C 1.53002 * 117.49919 * 174.99472 * 4 3 2 8 8 H 1.08998 * 117.51677 * 0.02562 * 7 4 3 9 9 C 1.50700 * 117.50072 * 214.97997 * 7 4 3 10 10 O 1.21283 * 119.99803 * 359.97438 * 9 7 4 11 11 N 1.34777 * 119.99675 * 180.26760 * 9 7 4 12 12 C 1.46496 * 120.00345 * 359.72090 * 11 9 7 13 13 C 1.46497 * 119.99525 * 179.72583 * 11 9 7 14 14 H 1.09000 * 110.88922 * 356.11794 * 13 11 9 15 15 C 1.55164 * 111.00424 * 119.99732 * 13 11 9 16 16 C 1.54322 * 102.94194 * 153.57176 * 15 13 11 17 17 N 1.47024 * 107.27238 * 337.81258 * 16 15 13 18 18 C 1.36936 * 125.64553 * 178.96336 * 17 16 15 19 19 H 1.07998 * 120.00046 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00428 * 359.96919 * 18 17 16 21 21 N 1.31625 * 119.99857 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00254 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46987 * 59.99745 * 22 20 18 24 24 H 1.48496 * 109.46911 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46672 * 299.99996 * 22 20 18 26 26 C 1.47420 * 108.70432 * 358.93679 * 17 16 15 27 27 H 1.08997 * 109.46970 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46836 * 300.00198 * 1 2 3 29 29 H 1.09004 * 109.47037 * 59.99871 * 1 2 3 30 30 H 1.09003 * 109.47217 * 240.00150 * 2 1 3 31 31 H 1.09001 * 109.47521 * 119.99971 * 2 1 3 32 32 H 1.09000 * 109.47498 * 60.00208 * 3 2 1 33 33 H 1.09002 * 109.47008 * 299.99522 * 3 2 1 34 34 H 1.08992 * 117.50251 * 145.02429 * 6 4 3 35 35 H 1.08999 * 117.49564 * 359.97438 * 6 4 3 36 36 H 1.08997 * 109.47115 * 90.00316 * 12 11 9 37 37 H 1.08995 * 109.47364 * 210.00706 * 12 11 9 38 38 H 1.09002 * 109.47090 * 330.00257 * 12 11 9 39 39 H 1.08997 * 110.72047 * 271.93751 * 15 13 11 40 40 H 1.09000 * 110.71492 * 35.03465 * 15 13 11 41 41 H 1.09007 * 109.87971 * 97.22299 * 16 15 13 42 42 H 1.08997 * 109.88371 * 218.38851 * 16 15 13 43 43 H 0.97003 * 119.99949 * 180.02562 * 21 20 18 44 44 H 1.09002 * 110.36508 * 265.29838 * 26 17 16 45 45 H 1.08996 * 110.36795 * 142.96855 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0405 0.5850 -0.4805 6 6 4.2760 2.0456 1.2166 7 6 4.2765 2.7945 -0.1177 8 1 3.6516 3.6841 -0.1955 9 6 5.5697 2.8386 -0.8903 10 8 6.0126 1.8259 -1.3895 11 7 6.2369 4.0023 -1.0214 12 6 5.7020 5.2254 -0.4181 13 6 7.4970 4.0440 -1.7673 14 1 7.7898 3.0454 -2.0917 15 6 7.3970 5.0138 -2.9744 16 6 8.8613 5.4510 -3.1888 17 7 9.5724 5.2321 -1.9207 18 6 10.9014 5.4762 -1.6985 19 1 11.3310 5.2818 -0.7269 20 6 11.6964 5.9733 -2.7220 21 7 11.1728 6.2105 -3.9061 22 14 13.5095 6.3056 -2.4191 23 1 14.1842 5.0440 -2.0212 24 1 14.1314 6.8282 -3.6621 25 1 13.6542 7.3081 -1.3332 26 6 8.6176 4.7068 -0.9278 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2109 1.5850 1.5356 35 1 3.6504 2.4428 2.0160 36 1 6.0877 5.3290 0.5961 37 1 6.0064 6.0869 -1.0124 38 1 4.6137 5.1704 -0.3891 39 1 7.0163 4.4959 -3.8547 40 1 6.7679 5.8698 -2.7301 41 1 9.3158 4.8507 -3.9770 42 1 8.8975 6.5070 -3.4566 43 1 11.7284 6.5576 -4.6214 44 1 8.2104 5.5195 -0.3262 45 1 9.1017 3.9672 -0.2902 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033399493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:50 Heat of formation + Delta-G solvation = -12.842951 kcal Electronic energy + Delta-G solvation = -22125.295143 eV Core-core repulsion = 18950.215594 eV Total energy + Delta-G solvation = -3175.079549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37339 -39.39047 -37.95830 -36.27539 -34.73616 -34.01337 -31.17514 -29.44502 -28.31777 -27.76902 -26.59481 -24.84890 -22.81821 -22.08992 -21.71074 -21.22937 -19.84348 -18.96224 -18.48331 -17.40700 -16.71714 -16.32262 -16.05627 -15.93060 -15.56297 -15.31377 -14.60760 -14.30139 -14.17873 -14.09046 -13.91393 -13.69460 -13.62973 -13.20123 -13.07538 -12.94771 -12.77606 -12.70973 -12.35442 -12.17888 -12.12662 -12.09442 -11.90770 -11.82412 -11.63362 -11.52666 -11.13845 -10.91690 -10.74044 -10.72989 -9.66450 -8.94502 -7.87828 -5.25172 1.44449 1.46340 1.48814 1.54959 1.89316 2.48836 2.87694 3.30473 3.44023 3.64586 3.75015 3.82370 3.91712 3.93800 4.10454 4.16575 4.22927 4.30590 4.34458 4.41309 4.53643 4.62094 4.66407 4.69993 4.78117 4.86389 4.90266 4.92538 4.97284 5.00718 5.02688 5.10318 5.14388 5.24387 5.39625 5.40024 5.43977 5.53673 5.55651 5.59250 5.69035 6.14894 6.43034 7.05487 7.15370 7.71412 8.35597 9.22243 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.046895 B = 0.002941 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.934730 B = 9517.186922 C = 9597.701351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.123 4.123 5 H 0.087 0.913 6 C -0.132 4.132 7 C -0.189 4.189 8 H 0.156 0.844 9 C 0.532 3.468 10 O -0.595 6.595 11 N -0.596 5.596 12 C 0.071 3.929 13 C 0.137 3.863 14 H 0.074 0.926 15 C -0.134 4.134 16 C 0.189 3.811 17 N -0.625 5.625 18 C -0.247 4.247 19 H 0.083 0.917 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.983 3.017 23 H -0.279 1.279 24 H -0.293 1.293 25 H -0.273 1.273 26 C 0.134 3.866 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.009 0.991 42 H 0.018 0.982 43 H 0.248 0.752 44 H 0.045 0.955 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.586 -5.226 11.137 25.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.118 4.118 4 C -0.142 4.142 5 H 0.105 0.895 6 C -0.170 4.170 7 C -0.210 4.210 8 H 0.174 0.826 9 C 0.323 3.677 10 O -0.476 6.476 11 N -0.327 5.327 12 C -0.071 4.071 13 C 0.032 3.968 14 H 0.092 0.908 15 C -0.173 4.173 16 C 0.064 3.936 17 N -0.352 5.352 18 C -0.376 4.376 19 H 0.101 0.899 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.810 3.190 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.199 1.199 26 C 0.008 3.992 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.156 0.844 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.124 0.876 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.027 0.973 42 H 0.036 0.964 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -22.183 -5.644 10.778 25.301 hybrid contribution 1.679 0.163 -0.559 1.777 sum -20.504 -5.481 10.219 23.556 Atomic orbital electron populations 1.21763 0.94879 1.01947 1.02224 1.21509 0.96456 0.96438 1.01808 1.21219 0.89856 0.97608 1.03166 1.22459 0.96050 0.94241 1.01486 0.89491 1.23191 1.02671 1.00756 0.90334 1.22373 0.95804 1.00270 1.02546 0.82649 1.20509 0.85793 0.82015 0.79398 1.90658 1.70280 1.35496 1.51200 1.47765 1.21904 1.09990 1.53022 1.22092 1.00907 0.85435 0.98641 1.21926 0.83763 0.99026 0.92118 0.90789 1.23047 0.97443 0.99190 0.97615 1.20869 0.87774 0.97371 0.87623 1.44667 1.05664 1.76026 1.08865 1.19416 0.84312 1.36582 0.97251 0.89927 1.25716 1.02841 1.01680 0.95638 1.70177 1.35768 1.51303 1.02723 0.85091 0.79133 0.78070 0.76658 1.20504 1.21894 1.19859 1.21833 0.89880 0.95678 0.91809 0.92595 0.91861 0.92684 0.93128 0.91776 0.89563 0.91287 0.90019 0.84444 0.91249 0.90818 0.87608 0.91177 0.89311 0.97305 0.96360 0.94234 0.93781 0.94983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.63 5.89 30.60 0.18 -1.45 16 3 C -0.08 -1.04 5.50 30.60 0.17 -0.87 16 4 C -0.12 -2.31 5.25 -10.79 -0.06 -2.36 16 5 H 0.09 2.18 7.60 -2.38 -0.02 2.16 16 6 C -0.13 -2.14 9.88 30.60 0.30 -1.84 16 7 C -0.19 -3.69 5.01 -11.54 -0.06 -3.75 16 8 H 0.16 2.00 6.44 -2.39 -0.02 1.98 16 9 C 0.53 16.27 7.46 87.66 0.65 16.92 16 10 O -0.60 -24.04 15.64 -3.04 -0.05 -24.09 16 11 N -0.60 -17.66 2.91 -814.83 -2.37 -20.03 16 12 C 0.07 1.41 8.87 127.77 1.13 2.54 16 13 C 0.14 5.28 3.45 46.39 0.16 5.44 16 14 H 0.07 3.34 7.02 -2.39 -0.02 3.32 16 15 C -0.13 -5.17 6.51 31.78 0.21 -4.97 16 16 C 0.19 9.66 5.37 86.73 0.47 10.12 16 17 N -0.63 -33.29 3.39 -691.99 -2.35 -35.64 16 18 C -0.25 -14.21 10.28 84.03 0.86 -13.35 16 19 H 0.08 4.53 7.83 -2.91 -0.02 4.51 16 20 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 21 N -0.95 -58.26 10.31 21.65 0.22 -58.03 16 22 Si 0.98 46.46 29.55 68.60 2.03 48.49 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C 0.13 5.74 6.79 86.86 0.59 6.32 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.77 7.87 -2.39 -0.02 0.75 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.14 1.30 8.03 -2.39 -0.02 1.28 16 36 H 0.07 1.25 8.09 -2.39 -0.02 1.24 16 37 H 0.07 1.56 6.41 -2.39 -0.02 1.54 16 38 H 0.11 1.33 6.00 -2.39 -0.01 1.31 16 39 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.09 2.94 6.40 -2.39 -0.02 2.92 16 41 H 0.01 0.51 7.38 -2.38 -0.02 0.49 16 42 H 0.02 1.02 7.51 -2.39 -0.02 1.00 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.04 1.72 7.00 -2.39 -0.02 1.70 16 45 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -74.00 353.96 4.22 -69.78 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.95 Total: 10.96 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: 5.79 Total: 8.56 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -4.50 Total: -113.70 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -74.00 4.22 -69.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033399493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.933 kcal (2) G-P(sol) polarization free energy of solvation -73.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds