Wall clock time and date at job start Tue Mar 31 2020 01:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 C 1.53002 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.55767 * 29.30861 * 4 3 2 6 6 C 1.52999 * 117.49817 * 243.62405 * 4 3 2 7 7 C 1.52995 * 117.49997 * 174.99970 * 4 3 2 8 8 H 1.08995 * 117.52015 * 0.02562 * 7 4 3 9 9 C 1.50702 * 117.49799 * 214.97673 * 7 4 3 10 10 O 1.21283 * 120.00034 * 359.97438 * 9 7 4 11 11 N 1.34773 * 119.99935 * 179.97438 * 9 7 4 12 12 C 1.46494 * 120.00306 * 0.02562 * 11 9 7 13 13 C 1.46509 * 119.99999 * 179.97438 * 11 9 7 14 14 H 1.09004 * 110.64073 * 358.31434 * 13 11 9 15 15 C 1.55148 * 110.72032 * 234.97715 * 13 11 9 16 16 C 1.55133 * 101.48378 * 205.96845 * 15 13 11 17 17 N 1.47426 * 104.72214 * 37.29794 * 16 15 13 18 18 C 1.36939 * 125.64656 * 155.82094 * 17 16 15 19 19 H 1.07999 * 119.99517 * 199.40367 * 18 17 16 20 20 C 1.38809 * 120.00347 * 19.40725 * 18 17 16 21 21 N 1.31623 * 119.99893 * 28.44314 * 20 18 17 22 22 Si 1.86793 * 119.99903 * 208.45078 * 20 18 17 23 23 H 1.48503 * 109.47100 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47335 * 299.99887 * 22 20 18 25 25 H 1.48502 * 109.47227 * 59.99961 * 22 20 18 26 26 C 1.47022 * 108.69976 * 335.54833 * 17 16 15 27 27 H 1.09006 * 109.46862 * 300.00163 * 1 2 3 28 28 H 1.09000 * 109.47037 * 59.99665 * 1 2 3 29 29 H 1.08997 * 109.47427 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46931 * 239.99976 * 2 1 3 31 31 H 1.08993 * 109.47145 * 119.99645 * 2 1 3 32 32 H 1.08996 * 109.47294 * 60.00199 * 3 2 1 33 33 H 1.09002 * 109.47136 * 299.99659 * 3 2 1 34 34 H 1.09001 * 117.49722 * 145.01954 * 6 4 3 35 35 H 1.09006 * 117.51697 * 359.97438 * 6 4 3 36 36 H 1.09005 * 109.47234 * 270.00175 * 12 11 9 37 37 H 1.08994 * 109.47111 * 29.99969 * 12 11 9 38 38 H 1.09001 * 109.47539 * 150.00386 * 12 11 9 39 39 H 1.09003 * 111.00636 * 324.20324 * 15 13 11 40 40 H 1.09000 * 111.00689 * 88.02286 * 15 13 11 41 41 H 1.09003 * 110.49732 * 278.44913 * 16 15 13 42 42 H 1.09002 * 110.34263 * 156.06155 * 16 15 13 43 43 H 0.96998 * 120.00170 * 5.66170 * 21 20 18 44 44 H 1.09002 * 109.87831 * 120.70897 * 26 17 16 45 45 H 1.08997 * 109.88402 * 241.71642 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0401 0.5852 -0.4823 6 6 4.2769 2.0453 1.2150 7 6 4.2763 2.7945 -0.1190 8 1 3.6514 3.6842 -0.1960 9 6 5.5689 2.8389 -0.8927 10 8 6.0115 1.8264 -1.3926 11 7 6.2330 4.0037 -1.0289 12 6 5.6987 5.2266 -0.4246 13 6 7.4898 4.0468 -1.7806 14 1 7.7596 3.0521 -2.1355 15 6 8.6264 4.6521 -0.9152 16 6 9.5734 5.2219 -2.0039 17 7 8.6729 5.7460 -3.0468 18 6 8.9842 6.7260 -3.9513 19 1 8.1961 7.2613 -4.4599 20 6 10.3125 7.0312 -4.2143 21 7 11.2390 6.1056 -4.0823 22 14 10.7851 8.7554 -4.7555 23 1 12.2530 8.8218 -4.9705 24 1 10.0834 9.0866 -6.0217 25 1 10.3948 9.7287 -3.7040 26 6 7.3875 5.0377 -2.9592 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2121 1.5846 1.5330 35 1 3.6522 2.4423 2.0153 36 1 5.0429 5.7274 -1.1369 37 1 5.1341 4.9720 0.4722 38 1 6.5216 5.8905 -0.1596 39 1 8.2466 5.4441 -0.2697 40 1 9.1257 3.8797 -0.3301 41 1 10.2061 4.4328 -2.4104 42 1 10.1847 6.0249 -1.5919 43 1 10.9858 5.1910 -3.8815 44 1 6.5834 5.7504 -2.7756 45 1 7.1984 4.4966 -3.8862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033399495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:54 Heat of formation + Delta-G solvation = 0.751421 kcal Electronic energy + Delta-G solvation = -22176.415863 eV Core-core repulsion = 19001.925811 eV Total energy + Delta-G solvation = -3174.490053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.24751 -38.15153 -36.88416 -34.90100 -34.10657 -32.24987 -29.22136 -28.14894 -27.55827 -26.58734 -24.65445 -23.59645 -22.21675 -20.88842 -20.30682 -20.04834 -18.69069 -17.52499 -17.32807 -16.24593 -15.46265 -15.29252 -14.65945 -14.50750 -14.29621 -13.85277 -13.58962 -13.28798 -13.25178 -12.98364 -12.86216 -12.49549 -12.39918 -12.18273 -12.04821 -11.60901 -11.56053 -11.30134 -11.10980 -11.04938 -10.75639 -10.70077 -10.54843 -10.42303 -10.17345 -10.06743 -10.01579 -9.62717 -9.53727 -8.45472 -8.36106 -6.93227 -6.10525 -3.16817 2.53245 3.04355 3.49920 3.53442 3.67812 3.71772 4.27142 4.54266 4.59037 4.59999 4.78868 4.86746 4.90302 5.03714 5.17892 5.21506 5.25100 5.28819 5.37707 5.44329 5.46472 5.52387 5.52543 5.56917 5.63404 5.64576 5.75410 5.77861 5.83928 5.94753 5.98282 6.00140 6.14453 6.16672 6.35091 6.48483 6.62997 6.88245 6.92422 7.02409 7.55955 7.80915 8.29851 8.48755 9.01523 9.80776 10.36630 11.21553 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.041485 B = 0.003002 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.776138 B = 9325.153703 C = 9443.274013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.119 4.119 5 H 0.117 0.883 6 C -0.149 4.149 7 C -0.187 4.187 8 H 0.123 0.877 9 C 0.541 3.459 10 O -0.545 6.545 11 N -0.598 5.598 12 C 0.077 3.923 13 C 0.127 3.873 14 H 0.104 0.896 15 C -0.144 4.144 16 C 0.146 3.854 17 N -0.600 5.600 18 C -0.338 4.338 19 H 0.063 0.937 20 C -0.025 4.025 21 N -0.913 5.913 22 Si 1.066 2.934 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.294 1.294 26 C 0.128 3.872 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.053 0.947 43 H 0.269 0.731 44 H 0.029 0.971 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.288 -7.229 12.785 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.138 4.138 5 H 0.135 0.865 6 C -0.186 4.186 7 C -0.209 4.209 8 H 0.140 0.860 9 C 0.330 3.670 10 O -0.423 6.423 11 N -0.330 5.330 12 C -0.066 4.066 13 C 0.024 3.976 14 H 0.122 0.878 15 C -0.183 4.183 16 C 0.020 3.980 17 N -0.327 5.327 18 C -0.466 4.466 19 H 0.081 0.919 20 C -0.227 4.227 21 N -0.554 5.554 22 Si 0.895 3.105 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.221 1.221 26 C 0.002 3.998 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -16.744 -6.679 12.057 21.688 hybrid contribution -1.333 -0.770 0.249 1.559 sum -18.077 -7.449 12.306 23.102 Atomic orbital electron populations 1.21782 0.95906 1.01608 1.01758 1.21502 0.95601 0.96529 1.02373 1.21240 0.91952 0.97347 1.02160 1.22452 0.94597 0.95663 1.01039 0.86465 1.23084 1.03062 1.02203 0.90262 1.22323 0.97900 0.98646 1.01989 0.85952 1.19664 0.84534 0.82927 0.79917 1.90673 1.68634 1.33835 1.49158 1.47743 1.23755 1.08371 1.53100 1.21786 0.99987 0.87222 0.97641 1.22202 0.82182 1.01007 0.92245 0.87815 1.23224 0.96978 0.99883 0.98257 1.21557 0.92204 0.96866 0.87401 1.44512 1.10282 1.42964 1.34979 1.19704 0.94054 1.11227 1.21606 0.91882 1.25809 0.92188 1.05331 0.99378 1.70779 1.35884 1.02541 1.46156 0.83511 0.76006 0.75110 0.75828 1.21063 1.21978 1.22091 1.21570 0.90886 0.92689 0.94681 0.92830 0.92721 0.92770 0.91750 0.91835 0.91680 0.91389 0.88361 0.87917 0.92551 0.91170 0.90275 0.91157 0.91619 0.95303 0.92882 0.91980 0.95298 0.95663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.90 5.89 -26.73 -0.16 -1.06 16 3 C -0.09 -0.71 5.50 -26.73 -0.15 -0.85 16 4 C -0.12 -1.20 5.25 -90.62 -0.48 -1.68 16 5 H 0.12 1.42 7.60 -51.93 -0.39 1.02 16 6 C -0.15 -1.37 9.88 -26.73 -0.26 -1.63 16 7 C -0.19 -2.09 4.52 -91.77 -0.41 -2.50 16 8 H 0.12 1.13 7.26 -51.93 -0.38 0.76 16 9 C 0.54 8.47 7.46 -10.99 -0.08 8.38 16 10 O -0.55 -10.56 15.63 5.56 0.09 -10.47 16 11 N -0.60 -9.32 2.88 -171.84 -0.50 -9.82 16 12 C 0.08 0.93 8.90 59.84 0.53 1.46 16 13 C 0.13 2.40 3.36 -66.10 -0.22 2.18 16 14 H 0.10 2.15 6.99 -51.93 -0.36 1.78 16 15 C -0.14 -2.67 6.62 -24.47 -0.16 -2.83 16 16 C 0.15 3.43 5.39 -2.41 -0.01 3.42 16 17 N -0.60 -15.54 3.26 -169.93 -0.55 -16.09 16 18 C -0.34 -9.70 10.00 -15.06 -0.15 -9.85 16 19 H 0.06 1.81 7.97 -52.49 -0.42 1.39 16 20 C -0.02 -0.72 5.10 -17.43 -0.09 -0.81 16 21 N -0.91 -27.95 13.01 55.49 0.72 -27.23 16 22 Si 1.07 25.48 30.00 -169.99 -5.10 20.38 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 26 C 0.13 2.83 6.88 -3.07 -0.02 2.81 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 0.71 8.03 -51.93 -0.42 0.30 16 36 H 0.06 0.66 7.89 -51.93 -0.41 0.25 16 37 H 0.07 0.64 6.64 -51.93 -0.34 0.30 16 38 H 0.08 1.01 6.07 -51.93 -0.32 0.69 16 39 H 0.07 1.20 6.09 -51.93 -0.32 0.89 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.03 0.73 6.81 -51.93 -0.35 0.38 16 42 H 0.05 1.33 8.08 -51.93 -0.42 0.91 16 43 H 0.27 8.30 6.19 -40.82 -0.25 8.05 16 44 H 0.03 0.62 6.94 -51.93 -0.36 0.26 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -33.15 354.47 -9.05 -42.19 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.75 Total: -0.75 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -1.30 Total: -3.56 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.33 Total: -53.14 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.10 Total: 20.38 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.15 -9.05 -42.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033399495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.946 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds