Wall clock time and date at job start Tue Mar 31 2020 01:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 C 1.53002 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.09000 * 115.55767 * 29.30861 * 4 3 2 6 6 C 1.52999 * 117.49817 * 243.62405 * 4 3 2 7 7 C 1.52995 * 117.49997 * 174.99970 * 4 3 2 8 8 H 1.08995 * 117.52015 * 0.02562 * 7 4 3 9 9 C 1.50702 * 117.49799 * 214.97673 * 7 4 3 10 10 O 1.21283 * 120.00034 * 359.97438 * 9 7 4 11 11 N 1.34773 * 119.99935 * 179.97438 * 9 7 4 12 12 C 1.46494 * 120.00306 * 0.02562 * 11 9 7 13 13 C 1.46509 * 119.99999 * 179.97438 * 11 9 7 14 14 H 1.09004 * 110.64073 * 358.31434 * 13 11 9 15 15 C 1.55148 * 110.72032 * 234.97715 * 13 11 9 16 16 C 1.55133 * 101.48378 * 205.96845 * 15 13 11 17 17 N 1.47426 * 104.72214 * 37.29794 * 16 15 13 18 18 C 1.36939 * 125.64656 * 155.82094 * 17 16 15 19 19 H 1.07999 * 119.99517 * 199.40367 * 18 17 16 20 20 C 1.38809 * 120.00347 * 19.40725 * 18 17 16 21 21 N 1.31623 * 119.99893 * 28.44314 * 20 18 17 22 22 Si 1.86793 * 119.99903 * 208.45078 * 20 18 17 23 23 H 1.48503 * 109.47100 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47335 * 299.99887 * 22 20 18 25 25 H 1.48502 * 109.47227 * 59.99961 * 22 20 18 26 26 C 1.47022 * 108.69976 * 335.54833 * 17 16 15 27 27 H 1.09006 * 109.46862 * 300.00163 * 1 2 3 28 28 H 1.09000 * 109.47037 * 59.99665 * 1 2 3 29 29 H 1.08997 * 109.47427 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46931 * 239.99976 * 2 1 3 31 31 H 1.08993 * 109.47145 * 119.99645 * 2 1 3 32 32 H 1.08996 * 109.47294 * 60.00199 * 3 2 1 33 33 H 1.09002 * 109.47136 * 299.99659 * 3 2 1 34 34 H 1.09001 * 117.49722 * 145.01954 * 6 4 3 35 35 H 1.09006 * 117.51697 * 359.97438 * 6 4 3 36 36 H 1.09005 * 109.47234 * 270.00175 * 12 11 9 37 37 H 1.08994 * 109.47111 * 29.99969 * 12 11 9 38 38 H 1.09001 * 109.47539 * 150.00386 * 12 11 9 39 39 H 1.09003 * 111.00636 * 324.20324 * 15 13 11 40 40 H 1.09000 * 111.00689 * 88.02286 * 15 13 11 41 41 H 1.09003 * 110.49732 * 278.44913 * 16 15 13 42 42 H 1.09002 * 110.34263 * 156.06155 * 16 15 13 43 43 H 0.96998 * 120.00170 * 5.66170 * 21 20 18 44 44 H 1.09002 * 109.87831 * 120.70897 * 26 17 16 45 45 H 1.08997 * 109.88402 * 241.71642 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0401 0.5852 -0.4823 6 6 4.2769 2.0453 1.2150 7 6 4.2763 2.7945 -0.1190 8 1 3.6514 3.6842 -0.1960 9 6 5.5689 2.8389 -0.8927 10 8 6.0115 1.8264 -1.3926 11 7 6.2330 4.0037 -1.0289 12 6 5.6987 5.2266 -0.4246 13 6 7.4898 4.0468 -1.7806 14 1 7.7596 3.0521 -2.1355 15 6 8.6264 4.6521 -0.9152 16 6 9.5734 5.2219 -2.0039 17 7 8.6729 5.7460 -3.0468 18 6 8.9842 6.7260 -3.9513 19 1 8.1961 7.2613 -4.4599 20 6 10.3125 7.0312 -4.2143 21 7 11.2390 6.1056 -4.0823 22 14 10.7851 8.7554 -4.7555 23 1 12.2530 8.8218 -4.9705 24 1 10.0834 9.0866 -6.0217 25 1 10.3948 9.7287 -3.7040 26 6 7.3875 5.0377 -2.9592 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2121 1.5846 1.5330 35 1 3.6522 2.4423 2.0153 36 1 5.0429 5.7274 -1.1369 37 1 5.1341 4.9720 0.4722 38 1 6.5216 5.8905 -0.1596 39 1 8.2466 5.4441 -0.2697 40 1 9.1257 3.8797 -0.3301 41 1 10.2061 4.4328 -2.4104 42 1 10.1847 6.0249 -1.5919 43 1 10.9858 5.1910 -3.8815 44 1 6.5834 5.7504 -2.7756 45 1 7.1984 4.4966 -3.8862 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033399495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:53 Heat of formation + Delta-G solvation = -18.531412 kcal Electronic energy + Delta-G solvation = -22177.252030 eV Core-core repulsion = 19001.925811 eV Total energy + Delta-G solvation = -3175.326219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.46858 -39.56195 -38.03933 -36.43004 -34.78393 -34.15559 -31.11649 -29.64350 -28.36366 -27.74669 -26.48474 -24.90356 -22.85111 -22.25677 -21.77114 -21.26620 -19.91708 -19.61293 -18.51319 -17.55005 -16.49651 -16.35612 -16.03915 -15.89933 -15.62746 -15.36915 -15.17071 -14.80712 -14.35838 -14.17509 -13.84321 -13.71227 -13.49743 -13.17459 -13.11623 -12.87192 -12.66980 -12.58676 -12.55134 -12.47374 -12.20181 -11.93976 -11.90053 -11.74751 -11.66910 -11.62618 -11.19881 -10.96595 -10.79938 -10.55182 -9.73647 -9.08944 -8.38230 -5.42559 1.38725 1.57045 1.65153 1.82047 1.85251 2.62581 2.83513 3.13556 3.33914 3.53081 3.64641 3.70795 3.78295 3.85965 4.02485 4.14904 4.20482 4.22088 4.29989 4.30598 4.37377 4.43134 4.60232 4.64688 4.70867 4.82021 4.83409 4.88413 4.91039 4.94630 4.94936 4.97198 4.99475 5.07982 5.17256 5.21808 5.36962 5.41026 5.46089 5.52566 5.63403 6.24851 6.35055 6.81672 7.07807 7.63347 8.21389 8.92341 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.041485 B = 0.003002 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.776138 B = 9325.153703 C = 9443.274013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.124 4.124 5 H 0.088 0.912 6 C -0.128 4.128 7 C -0.192 4.192 8 H 0.151 0.849 9 C 0.534 3.466 10 O -0.593 6.593 11 N -0.598 5.598 12 C 0.071 3.929 13 C 0.141 3.859 14 H 0.079 0.921 15 C -0.122 4.122 16 C 0.148 3.852 17 N -0.620 5.620 18 C -0.351 4.351 19 H 0.060 0.940 20 C -0.077 4.077 21 N -0.941 5.941 22 Si 1.121 2.879 23 H -0.291 1.291 24 H -0.275 1.275 25 H -0.275 1.275 26 C 0.130 3.870 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.063 0.937 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.003 0.997 42 H 0.032 0.968 43 H 0.253 0.747 44 H 0.044 0.956 45 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.732 -5.839 15.029 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.120 4.120 4 C -0.143 4.143 5 H 0.106 0.894 6 C -0.165 4.165 7 C -0.213 4.213 8 H 0.169 0.831 9 C 0.325 3.675 10 O -0.474 6.474 11 N -0.328 5.328 12 C -0.070 4.070 13 C 0.036 3.964 14 H 0.097 0.903 15 C -0.161 4.161 16 C 0.022 3.978 17 N -0.347 5.347 18 C -0.479 4.479 19 H 0.078 0.922 20 C -0.273 4.273 21 N -0.583 5.583 22 Si 0.944 3.056 23 H -0.217 1.217 24 H -0.200 1.200 25 H -0.201 1.201 26 C 0.004 3.996 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.156 0.844 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.020 0.980 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -19.243 -5.284 14.329 24.568 hybrid contribution -0.613 -1.286 -0.483 1.504 sum -19.856 -6.570 13.846 25.083 Atomic orbital electron populations 1.21766 0.94925 1.01979 1.02188 1.21502 0.96430 0.96349 1.01863 1.21224 0.89990 0.97669 1.03076 1.22463 0.96006 0.94125 1.01683 0.89380 1.23215 1.02776 1.00398 0.90092 1.22338 0.95753 1.00300 1.02892 0.83122 1.20533 0.85595 0.81967 0.79431 1.90655 1.70096 1.35518 1.51155 1.47787 1.22515 1.09943 1.52585 1.22061 1.00219 0.85566 0.99171 1.21720 0.84397 0.98654 0.91653 0.90258 1.23071 0.95427 1.00735 0.96845 1.21468 0.92610 0.95398 0.88313 1.44781 1.11715 1.43061 1.35141 1.19998 0.94226 1.11764 1.21925 0.92207 1.27348 0.92373 1.08274 0.99328 1.70910 1.36428 1.02219 1.48713 0.82797 0.75382 0.70744 0.76667 1.21720 1.20023 1.20081 1.21624 0.89680 0.93201 0.95119 0.91810 0.92838 0.92518 0.93183 0.91563 0.89485 0.91616 0.89555 0.84355 0.91828 0.87307 0.90702 0.88809 0.89675 0.97952 0.94927 0.93703 0.93763 0.98111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.62 5.89 30.59 0.18 -1.44 16 3 C -0.08 -1.08 5.50 30.59 0.17 -0.91 16 4 C -0.12 -2.29 5.25 -10.79 -0.06 -2.34 16 5 H 0.09 2.17 7.60 -2.39 -0.02 2.15 16 6 C -0.13 -1.92 9.88 30.59 0.30 -1.61 16 7 C -0.19 -3.74 4.52 -11.54 -0.05 -3.79 16 8 H 0.15 2.09 7.26 -2.39 -0.02 2.08 16 9 C 0.53 16.17 7.46 87.66 0.65 16.82 16 10 O -0.59 -23.51 15.63 -3.04 -0.05 -23.56 16 11 N -0.60 -17.71 2.88 -815.97 -2.35 -20.06 16 12 C 0.07 1.48 8.90 127.77 1.14 2.62 16 13 C 0.14 5.34 3.36 46.17 0.16 5.49 16 14 H 0.08 3.42 6.99 -2.38 -0.02 3.40 16 15 C -0.12 -4.42 6.62 32.06 0.21 -4.21 16 16 C 0.15 7.17 5.39 86.93 0.47 7.64 16 17 N -0.62 -32.83 3.26 -691.54 -2.26 -35.09 16 18 C -0.35 -20.44 10.00 84.03 0.84 -19.60 16 19 H 0.06 3.45 7.97 -2.91 -0.02 3.43 16 20 C -0.08 -4.52 5.10 84.86 0.43 -4.08 16 21 N -0.94 -59.32 13.01 21.65 0.28 -59.04 16 22 Si 1.12 51.46 30.00 68.60 2.06 53.52 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.13 5.81 6.88 86.73 0.60 6.41 16 27 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 0.79 7.88 -2.39 -0.02 0.77 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.14 1.15 8.03 -2.38 -0.02 1.13 16 36 H 0.06 1.26 7.89 -2.38 -0.02 1.24 16 37 H 0.11 1.45 6.64 -2.39 -0.02 1.43 16 38 H 0.07 1.65 6.07 -2.39 -0.01 1.64 16 39 H 0.09 2.99 6.09 -2.39 -0.01 2.97 16 40 H 0.08 2.78 8.14 -2.39 -0.02 2.77 16 41 H 0.00 0.14 6.81 -2.39 -0.02 0.13 16 42 H 0.03 1.68 8.08 -2.39 -0.02 1.66 16 43 H 0.25 16.37 6.19 -92.71 -0.57 15.80 16 44 H 0.04 1.85 6.94 -2.39 -0.02 1.83 16 45 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 Total: -1.00 -75.52 354.47 4.58 -70.94 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 1.14 Total: 13.19 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.75 Total: 0.10 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -4.33 Total: -114.19 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.06 Total: 53.52 kcal Total: -75.52 4.58 -70.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033399495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.407 kcal (2) G-P(sol) polarization free energy of solvation -75.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds