Wall clock time and date at job start Tue Mar 31 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46766 * 2 1 4 4 H 1.08998 * 115.55239 * 29.33019 * 3 2 1 5 5 C 1.52996 * 117.51855 * 243.62988 * 3 2 1 6 6 C 1.53001 * 60.00235 * 252.52022 * 5 3 2 7 7 H 1.08996 * 117.51926 * 107.47600 * 6 5 3 8 8 C 1.50695 * 117.49707 * 252.51020 * 6 5 3 9 9 O 1.21286 * 119.99705 * 68.62188 * 8 6 5 10 10 N 1.34778 * 120.00267 * 248.61399 * 8 6 5 11 11 C 1.46503 * 119.99800 * 0.02562 * 10 8 6 12 12 C 1.52995 * 109.46994 * 266.54980 * 11 10 8 13 13 C 1.46496 * 120.00201 * 179.97438 * 10 8 6 14 14 H 1.09002 * 110.63856 * 56.87771 * 13 10 8 15 15 C 1.55152 * 110.72444 * 293.73426 * 13 10 8 16 16 C 1.54913 * 101.58242 * 277.14141 * 15 13 10 17 17 N 1.47426 * 104.82742 * 322.98603 * 16 15 13 18 18 C 1.36938 * 125.64601 * 204.08081 * 17 16 15 19 19 H 1.08004 * 119.99931 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00305 * 0.06146 * 18 17 16 21 21 N 1.31626 * 119.99935 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00198 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47486 * 59.99710 * 22 20 18 24 24 H 1.48500 * 109.47211 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46888 * 299.99107 * 22 20 18 26 26 C 1.47017 * 108.70473 * 24.13368 * 17 16 15 27 27 H 1.09007 * 109.46534 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47288 * 299.99642 * 1 2 3 29 29 H 1.08994 * 109.47103 * 60.00620 * 1 2 3 30 30 H 1.08997 * 109.47078 * 239.99918 * 2 1 3 31 31 H 1.08998 * 109.47368 * 120.00087 * 2 1 3 32 32 H 1.08996 * 117.50182 * 145.03249 * 5 3 2 33 33 H 1.09003 * 117.49949 * 0.02562 * 5 3 2 34 34 H 1.09005 * 109.47217 * 26.54705 * 11 10 8 35 35 H 1.08998 * 109.47376 * 146.54420 * 11 10 8 36 36 H 1.09004 * 109.47285 * 185.59852 * 12 11 10 37 37 H 1.09003 * 109.46863 * 305.59891 * 12 11 10 38 38 H 1.09004 * 109.47520 * 65.59850 * 12 11 10 39 39 H 1.09002 * 111.00103 * 35.20924 * 15 13 10 40 40 H 1.09001 * 111.00723 * 159.06382 * 15 13 10 41 41 H 1.08997 * 110.37031 * 81.82760 * 16 15 13 42 42 H 1.09002 * 110.36707 * 204.15138 * 16 15 13 43 43 H 0.96996 * 119.99800 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.87835 * 239.51979 * 26 17 16 45 45 H 1.08994 * 110.01254 * 118.43048 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8438 1.9081 -1.2157 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1961 8 6 4.0228 2.8618 0.8918 9 8 3.2156 3.6162 1.3922 10 7 5.3423 3.1001 1.0276 11 6 6.3172 2.1890 0.4228 12 6 6.7385 1.1372 1.4509 13 6 5.8018 4.2706 1.7791 14 1 5.4030 4.2567 2.7935 15 6 5.4038 5.5815 1.0508 16 6 6.5442 5.7182 0.0112 17 7 7.7518 5.2440 0.7114 18 6 9.0406 5.5890 0.4026 19 1 9.8604 5.1855 0.9785 20 6 9.2933 6.4578 -0.6501 21 7 8.2943 6.9497 -1.3518 22 14 11.0514 6.9278 -1.0718 23 1 11.8199 5.7064 -1.4223 24 1 11.0509 7.8603 -2.2274 25 1 11.6810 7.5899 0.0988 26 6 7.3435 4.3385 1.7952 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.7210 2.9434 -1.5337 33 1 3.0091 1.1869 -2.0160 34 1 5.8674 1.6952 -0.4386 35 1 7.1922 2.7541 0.1017 36 1 7.5355 0.5210 1.0347 37 1 7.0965 1.6337 2.3528 38 1 5.8837 0.5075 1.6978 39 1 4.4370 5.4768 0.5585 40 1 5.4002 6.4259 1.7401 41 1 6.3408 5.0946 -0.8593 42 1 6.6630 6.7600 -0.2868 43 1 8.4709 7.5571 -2.0871 44 1 7.6874 4.7283 2.7533 45 1 7.7600 3.3452 1.6283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033961694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:19 Heat of formation + Delta-G solvation = 14.957435 kcal Electronic energy + Delta-G solvation = -23136.673286 eV Core-core repulsion = 19962.799253 eV Total energy + Delta-G solvation = -3173.874034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.20565 -38.02856 -36.48758 -34.94003 -32.46088 -31.98171 -30.45019 -28.74868 -27.59281 -24.84896 -24.24773 -23.74969 -22.74091 -20.84493 -20.16161 -19.83559 -18.22749 -17.04273 -16.77411 -16.38847 -15.16203 -14.84965 -14.74441 -14.53727 -14.11692 -13.71259 -13.60188 -13.11865 -12.88788 -12.57150 -12.32095 -12.22118 -12.12402 -11.98136 -11.65949 -11.53210 -11.41738 -11.13677 -10.99372 -10.88593 -10.87020 -10.61833 -10.27772 -10.15521 -10.07277 -10.00639 -9.92260 -9.62027 -9.28471 -8.65523 -8.19846 -6.84821 -5.65539 -3.08449 2.76518 3.25943 3.39131 3.43502 3.44956 3.87481 4.46699 4.47587 4.74598 4.77705 4.99484 5.09099 5.17952 5.23002 5.31301 5.39674 5.42054 5.48512 5.54908 5.59190 5.66056 5.71263 5.77974 5.78661 5.88032 5.93704 5.93864 5.99179 6.01369 6.06458 6.29684 6.32365 6.37705 6.45458 6.60247 6.73148 6.78855 7.12397 7.55005 7.61664 7.80102 7.87549 8.35895 8.54076 9.20648 9.81329 10.46443 11.37504 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.004072 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.122697 B = 6874.705206 C = 6986.788728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.122 4.122 4 H 0.116 0.884 5 C -0.148 4.148 6 C -0.187 4.187 7 H 0.121 0.879 8 C 0.542 3.458 9 O -0.546 6.546 10 N -0.587 5.587 11 C 0.095 3.905 12 C -0.168 4.168 13 C 0.135 3.865 14 H 0.074 0.926 15 C -0.151 4.151 16 C 0.156 3.844 17 N -0.602 5.602 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.920 5.920 22 Si 0.914 3.086 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.123 3.877 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.010 0.990 42 H 0.104 0.896 43 H 0.252 0.748 44 H 0.032 0.968 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 -14.073 2.126 17.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.140 4.140 4 H 0.134 0.866 5 C -0.185 4.185 6 C -0.208 4.208 7 H 0.138 0.862 8 C 0.330 3.670 9 O -0.425 6.425 10 N -0.318 5.318 11 C -0.028 4.028 12 C -0.227 4.227 13 C 0.032 3.968 14 H 0.092 0.908 15 C -0.191 4.191 16 C 0.032 3.968 17 N -0.328 5.328 18 C -0.354 4.354 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.003 4.003 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.028 0.972 42 H 0.122 0.878 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.369 -13.524 2.240 17.189 hybrid contribution 1.128 0.168 -0.244 1.166 sum -9.241 -13.356 1.996 16.364 Atomic orbital electron populations 1.21737 0.95317 1.01418 1.02158 1.21138 0.96131 0.93869 1.01960 1.22452 0.91769 0.98376 1.01422 0.86571 1.23077 1.01985 1.03211 0.90272 1.22347 0.97026 0.99312 1.02123 0.86156 1.19554 0.81987 0.85402 0.80048 1.90651 1.53711 1.48921 1.49203 1.47857 1.05132 1.25655 1.53185 1.21678 0.94396 0.91449 0.95240 1.22250 1.01126 0.98918 1.00380 1.21995 0.95342 0.85272 0.94176 0.90819 1.23328 1.00295 0.95305 1.00152 1.21897 0.82052 1.02402 0.90470 1.44523 1.02881 1.51743 1.33682 1.19005 0.82211 1.22372 1.11769 0.90560 1.24791 0.97614 0.99899 0.98180 1.69818 1.28531 1.35840 1.22596 0.86163 0.83769 0.77987 0.77602 1.21243 1.21612 1.21183 1.21712 0.90390 0.95061 0.93150 0.92795 0.92536 0.92522 0.91763 0.91596 0.88229 0.88020 0.90771 0.88032 0.91679 0.91922 0.93073 0.91523 0.91547 0.97222 0.87792 0.93689 0.95067 0.94256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.87 37.16 0.37 -0.82 16 2 C -0.09 -0.83 6.22 -26.73 -0.17 -0.99 16 3 C -0.12 -1.40 5.25 -90.62 -0.48 -1.87 16 4 H 0.12 1.54 7.60 -51.93 -0.39 1.15 16 5 C -0.15 -1.71 9.88 -26.73 -0.26 -1.98 16 6 C -0.19 -2.40 4.51 -91.77 -0.41 -2.82 16 7 H 0.12 1.33 6.75 -51.93 -0.35 0.98 16 8 C 0.54 9.17 7.07 -10.99 -0.08 9.09 16 9 O -0.55 -10.92 15.11 5.55 0.08 -10.84 16 10 N -0.59 -9.96 2.62 -164.03 -0.43 -10.39 16 11 C 0.10 1.42 5.08 -4.04 -0.02 1.39 16 12 C -0.17 -2.04 9.74 37.15 0.36 -1.68 16 13 C 0.14 2.57 3.27 -66.10 -0.22 2.36 16 14 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 15 C -0.15 -3.21 6.48 -24.58 -0.16 -3.37 16 16 C 0.16 3.88 5.87 -2.53 -0.01 3.86 16 17 N -0.60 -15.08 3.27 -170.07 -0.56 -15.64 16 18 C -0.23 -6.14 10.27 -15.06 -0.15 -6.29 16 19 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 20 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 21 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 22 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.12 2.52 6.01 -3.07 -0.02 2.50 16 27 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.51 7.88 -51.93 -0.41 0.10 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 34 H 0.07 0.97 6.45 -51.93 -0.33 0.64 16 35 H 0.10 1.83 6.11 -51.93 -0.32 1.51 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.81 7.14 -51.93 -0.37 0.44 16 38 H 0.05 0.56 7.72 -51.93 -0.40 0.16 16 39 H 0.07 1.43 6.79 -51.93 -0.35 1.08 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 2.92 5.87 -51.93 -0.31 2.62 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.04 0.76 4.31 -51.93 -0.22 0.53 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -30.66 349.19 -9.10 -39.76 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.65 Total: 2.14 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.35 Total: -0.96 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: -0.43 Total: -52.16 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.66 -9.10 -39.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033961694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.721 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds