Wall clock time and date at job start Tue Mar 31 2020 02:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46766 * 2 1 4 4 H 1.08998 * 115.55239 * 29.33019 * 3 2 1 5 5 C 1.52996 * 117.51855 * 243.62988 * 3 2 1 6 6 C 1.53001 * 60.00235 * 252.52022 * 5 3 2 7 7 H 1.08996 * 117.51926 * 107.47600 * 6 5 3 8 8 C 1.50695 * 117.49707 * 252.51020 * 6 5 3 9 9 O 1.21286 * 119.99705 * 68.62188 * 8 6 5 10 10 N 1.34778 * 120.00267 * 248.61399 * 8 6 5 11 11 C 1.46503 * 119.99800 * 0.02562 * 10 8 6 12 12 C 1.52995 * 109.46994 * 266.54980 * 11 10 8 13 13 C 1.46496 * 120.00201 * 179.97438 * 10 8 6 14 14 H 1.09002 * 110.63856 * 56.87771 * 13 10 8 15 15 C 1.55152 * 110.72444 * 293.73426 * 13 10 8 16 16 C 1.54913 * 101.58242 * 277.14141 * 15 13 10 17 17 N 1.47426 * 104.82742 * 322.98603 * 16 15 13 18 18 C 1.36938 * 125.64601 * 204.08081 * 17 16 15 19 19 H 1.08004 * 119.99931 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00305 * 0.06146 * 18 17 16 21 21 N 1.31626 * 119.99935 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00198 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47486 * 59.99710 * 22 20 18 24 24 H 1.48500 * 109.47211 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46888 * 299.99107 * 22 20 18 26 26 C 1.47017 * 108.70473 * 24.13368 * 17 16 15 27 27 H 1.09007 * 109.46534 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47288 * 299.99642 * 1 2 3 29 29 H 1.08994 * 109.47103 * 60.00620 * 1 2 3 30 30 H 1.08997 * 109.47078 * 239.99918 * 2 1 3 31 31 H 1.08998 * 109.47368 * 120.00087 * 2 1 3 32 32 H 1.08996 * 117.50182 * 145.03249 * 5 3 2 33 33 H 1.09003 * 117.49949 * 0.02562 * 5 3 2 34 34 H 1.09005 * 109.47217 * 26.54705 * 11 10 8 35 35 H 1.08998 * 109.47376 * 146.54420 * 11 10 8 36 36 H 1.09004 * 109.47285 * 185.59852 * 12 11 10 37 37 H 1.09003 * 109.46863 * 305.59891 * 12 11 10 38 38 H 1.09004 * 109.47520 * 65.59850 * 12 11 10 39 39 H 1.09002 * 111.00103 * 35.20924 * 15 13 10 40 40 H 1.09001 * 111.00723 * 159.06382 * 15 13 10 41 41 H 1.08997 * 110.37031 * 81.82760 * 16 15 13 42 42 H 1.09002 * 110.36707 * 204.15138 * 16 15 13 43 43 H 0.96996 * 119.99800 * 179.97438 * 21 20 18 44 44 H 1.09003 * 109.87835 * 239.51979 * 26 17 16 45 45 H 1.08994 * 110.01254 * 118.43048 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1715 0.4817 5 6 2.8438 1.9081 -1.2157 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7720 0.1961 8 6 4.0228 2.8618 0.8918 9 8 3.2156 3.6162 1.3922 10 7 5.3423 3.1001 1.0276 11 6 6.3172 2.1890 0.4228 12 6 6.7385 1.1372 1.4509 13 6 5.8018 4.2706 1.7791 14 1 5.4030 4.2567 2.7935 15 6 5.4038 5.5815 1.0508 16 6 6.5442 5.7182 0.0112 17 7 7.7518 5.2440 0.7114 18 6 9.0406 5.5890 0.4026 19 1 9.8604 5.1855 0.9785 20 6 9.2933 6.4578 -0.6501 21 7 8.2943 6.9497 -1.3518 22 14 11.0514 6.9278 -1.0718 23 1 11.8199 5.7064 -1.4223 24 1 11.0509 7.8603 -2.2274 25 1 11.6810 7.5899 0.0988 26 6 7.3435 4.3385 1.7952 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.7210 2.9434 -1.5337 33 1 3.0091 1.1869 -2.0160 34 1 5.8674 1.6952 -0.4386 35 1 7.1922 2.7541 0.1017 36 1 7.5355 0.5210 1.0347 37 1 7.0965 1.6337 2.3528 38 1 5.8837 0.5075 1.6978 39 1 4.4370 5.4768 0.5585 40 1 5.4002 6.4259 1.7401 41 1 6.3408 5.0946 -0.8593 42 1 6.6630 6.7600 -0.2868 43 1 8.4709 7.5571 -2.0871 44 1 7.6874 4.7283 2.7533 45 1 7.7600 3.3452 1.6283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033961694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:19 Heat of formation + Delta-G solvation = -1.678787 kcal Electronic energy + Delta-G solvation = -23137.394687 eV Core-core repulsion = 19962.799253 eV Total energy + Delta-G solvation = -3174.595434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54747 -39.42597 -37.75021 -36.47403 -34.24074 -32.83789 -31.96915 -30.40187 -29.33747 -26.60278 -25.49882 -24.61641 -24.00401 -22.22264 -21.69827 -21.13969 -19.56690 -18.94323 -18.19140 -17.73622 -16.85834 -16.38329 -15.85805 -15.75414 -15.33190 -15.13035 -14.96320 -14.65320 -14.06547 -13.91432 -13.58720 -13.44582 -13.41167 -13.27961 -12.97699 -12.92041 -12.82644 -12.66424 -12.39617 -12.14346 -12.07158 -12.00570 -11.91437 -11.88365 -11.71714 -11.55406 -11.20847 -10.92197 -10.72863 -10.65114 -9.61760 -8.89675 -7.76132 -5.21371 1.48211 1.50894 1.51241 1.57566 1.96549 2.50374 2.88162 3.34761 3.39348 3.67395 3.76544 3.80563 3.89748 4.01197 4.06156 4.15910 4.25946 4.29533 4.40760 4.50775 4.55072 4.58661 4.63132 4.66688 4.78877 4.84414 4.92599 4.94947 4.96361 5.00603 5.01951 5.14214 5.17591 5.25066 5.32584 5.37576 5.46584 5.52350 5.56028 5.67373 5.77467 6.27505 6.48773 7.09263 7.20531 7.76552 8.41504 9.25814 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028855 B = 0.004072 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.122697 B = 6874.705206 C = 6986.788728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.114 4.114 4 H 0.092 0.908 5 C -0.144 4.144 6 C -0.193 4.193 7 H 0.148 0.852 8 C 0.535 3.465 9 O -0.585 6.585 10 N -0.590 5.590 11 C 0.095 3.905 12 C -0.160 4.160 13 C 0.145 3.855 14 H 0.084 0.916 15 C -0.140 4.140 16 C 0.170 3.830 17 N -0.617 5.617 18 C -0.236 4.236 19 H 0.086 0.914 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.981 3.019 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.278 1.278 26 C 0.124 3.876 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.083 0.917 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.067 0.933 41 H -0.015 1.015 42 H 0.069 0.931 43 H 0.246 0.754 44 H 0.037 0.963 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.716 -16.825 2.435 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 C -0.133 4.133 4 H 0.110 0.890 5 C -0.181 4.181 6 C -0.214 4.214 7 H 0.166 0.834 8 C 0.325 3.675 9 O -0.466 6.466 10 N -0.321 5.321 11 C -0.027 4.027 12 C -0.218 4.218 13 C 0.041 3.959 14 H 0.102 0.898 15 C -0.179 4.179 16 C 0.045 3.955 17 N -0.344 5.344 18 C -0.364 4.364 19 H 0.104 0.896 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.810 3.190 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.204 1.204 26 C -0.001 4.001 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.150 0.850 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.003 0.997 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.978 -16.319 2.572 19.300 hybrid contribution 0.969 1.036 -0.328 1.456 sum -9.009 -15.283 2.245 17.882 Atomic orbital electron populations 1.21745 0.94892 1.02326 1.01731 1.21155 0.96458 0.91786 1.03120 1.22485 0.90481 0.99674 1.00634 0.89010 1.23168 1.01353 1.02880 0.90690 1.22380 0.98316 0.98258 1.02399 0.83442 1.20286 0.81394 0.86174 0.79645 1.90629 1.54557 1.50584 1.50833 1.47956 1.05880 1.25260 1.52985 1.21769 0.92729 0.91304 0.96879 1.22175 1.02432 0.98215 0.98953 1.21787 0.94335 0.85116 0.94665 0.89769 1.23136 0.98465 0.97029 0.99313 1.21519 0.83593 0.99601 0.90776 1.44712 1.02356 1.52663 1.34682 1.19420 0.83405 1.21966 1.11647 0.89589 1.25639 1.01453 1.00328 0.98467 1.70076 1.30433 1.36522 1.22976 0.85108 0.79265 0.77654 0.77009 1.20093 1.22394 1.20413 1.21835 0.91361 0.95042 0.91827 0.91184 0.93395 0.92635 0.89969 0.90956 0.90436 0.85006 0.88751 0.91390 0.89769 0.92924 0.91233 0.92146 0.91470 0.99721 0.91349 0.94475 0.94465 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.87 71.98 0.71 -1.34 16 2 C -0.09 -1.29 6.22 30.60 0.19 -1.10 16 3 C -0.11 -2.43 5.25 -10.79 -0.06 -2.49 16 4 H 0.09 2.44 7.60 -2.39 -0.02 2.42 16 5 C -0.14 -3.08 9.88 30.59 0.30 -2.77 16 6 C -0.19 -4.56 4.51 -11.54 -0.05 -4.61 16 7 H 0.15 2.67 6.75 -2.39 -0.02 2.65 16 8 C 0.53 17.73 7.07 87.66 0.62 18.35 16 9 O -0.58 -23.61 15.11 -3.05 -0.05 -23.65 16 10 N -0.59 -19.54 2.62 -791.26 -2.07 -21.61 16 11 C 0.10 2.67 5.08 86.38 0.44 3.10 16 12 C -0.16 -3.37 9.74 71.98 0.70 -2.67 16 13 C 0.14 5.48 3.27 46.18 0.15 5.63 16 14 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 15 C -0.14 -6.09 6.48 31.99 0.21 -5.88 16 16 C 0.17 8.78 5.87 86.86 0.51 9.29 16 17 N -0.62 -31.35 3.27 -691.99 -2.26 -33.61 16 18 C -0.24 -12.89 10.27 84.03 0.86 -12.03 16 19 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 20 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 21 N -0.95 -56.92 10.09 21.65 0.22 -56.70 16 22 Si 0.98 45.11 29.55 68.60 2.03 47.14 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.12 5.02 6.01 86.73 0.52 5.54 16 27 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.95 7.88 -2.39 -0.02 0.93 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.13 2.03 8.03 -2.39 -0.02 2.01 16 34 H 0.09 2.24 6.45 -2.38 -0.02 2.23 16 35 H 0.07 2.40 6.11 -2.39 -0.01 2.38 16 36 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.05 1.23 7.14 -2.39 -0.02 1.21 16 38 H 0.07 1.24 7.72 -2.38 -0.02 1.22 16 39 H 0.06 2.69 6.79 -2.39 -0.02 2.67 16 40 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 41 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.07 4.04 5.87 -2.39 -0.01 4.03 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 2.20 4.31 -2.39 -0.01 2.19 16 Total: -1.00 -68.24 349.19 4.40 -63.85 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.95 Total: 18.86 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.57 Total: 5.74 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.11 Total: -111.93 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.24 4.40 -63.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033961694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.167 kcal (2) G-P(sol) polarization free energy of solvation -68.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds