Wall clock time and date at job start Tue Mar 31 2020 02:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46872 * 2 1 4 4 H 1.08998 * 115.55223 * 29.33372 * 3 2 1 5 5 C 1.52999 * 117.51986 * 243.62503 * 3 2 1 6 6 C 1.52991 * 60.00350 * 252.52312 * 5 3 2 7 7 H 1.09000 * 117.52126 * 107.47548 * 6 5 3 8 8 C 1.50703 * 117.50199 * 252.51299 * 6 5 3 9 9 O 1.21282 * 120.00160 * 68.61470 * 8 6 5 10 10 N 1.34772 * 119.99926 * 248.62429 * 8 6 5 11 11 C 1.46494 * 120.00248 * 179.97438 * 10 8 6 12 12 H 1.09001 * 109.37017 * 34.99647 * 11 10 8 13 13 C 1.50878 * 109.26934 * 154.67989 * 11 10 8 14 14 C 1.52566 * 109.36528 * 212.01769 * 13 11 10 15 15 C 1.47091 * 114.32424 * 274.98930 * 14 13 11 16 16 C 1.54856 * 110.32541 * 62.79138 * 15 14 13 17 17 N 1.44579 * 109.60818 * 288.73609 * 16 15 14 18 18 C 1.36934 * 118.64294 * 270.75215 * 17 16 15 19 19 H 1.07993 * 120.00350 * 26.48474 * 18 17 16 20 20 C 1.38816 * 119.99350 * 206.49022 * 18 17 16 21 21 N 1.31614 * 120.00372 * 15.67918 * 20 18 17 22 22 Si 1.86805 * 119.99552 * 195.67313 * 20 18 17 23 23 H 1.48502 * 109.46874 * 90.00315 * 22 20 18 24 24 H 1.48504 * 109.47037 * 209.99909 * 22 20 18 25 25 H 1.48493 * 109.47368 * 330.00339 * 22 20 18 26 26 C 1.47607 * 122.71174 * 90.72328 * 17 16 15 27 27 H 1.08999 * 109.47292 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47351 * 299.99828 * 1 2 3 29 29 H 1.09002 * 109.47417 * 59.99798 * 1 2 3 30 30 H 1.09001 * 109.46843 * 240.00188 * 2 1 3 31 31 H 1.08996 * 109.47062 * 120.00466 * 2 1 3 32 32 H 1.09005 * 117.49894 * 145.02908 * 5 3 2 33 33 H 1.08998 * 117.49844 * 0.02562 * 5 3 2 34 34 H 0.97005 * 120.00000 * 359.97438 * 10 8 6 35 35 H 1.09006 * 109.48709 * 331.98546 * 13 11 10 36 36 H 1.09005 * 109.49117 * 92.04511 * 13 11 10 37 37 H 1.08998 * 108.51729 * 153.72802 * 14 13 11 38 38 H 1.09004 * 108.51191 * 36.23776 * 14 13 11 39 39 H 1.09005 * 109.32648 * 302.53323 * 15 14 13 40 40 H 1.09001 * 109.19251 * 182.97345 * 15 14 13 41 41 H 1.09002 * 109.44938 * 168.69130 * 16 15 14 42 42 H 1.08997 * 109.44975 * 48.78133 * 16 15 14 43 43 H 0.97003 * 120.00048 * 180.02562 * 21 20 18 44 44 H 1.08993 * 108.94948 * 197.19058 * 26 17 16 45 45 H 1.09000 * 108.94521 * 78.55261 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9081 -1.2156 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7719 0.1961 8 6 4.0228 2.8617 0.8920 9 8 3.2157 3.6162 1.3924 10 7 5.3423 3.0999 1.0277 11 6 5.8018 4.2704 1.7794 12 1 5.1224 4.4553 2.6114 13 6 7.1876 4.0059 2.3144 14 6 7.3642 4.7339 3.6434 15 6 7.7812 6.1386 3.5141 16 6 6.6959 6.9556 2.7706 17 7 6.6769 6.5796 1.3747 18 6 7.4889 7.2537 0.5022 19 1 8.3975 7.7165 0.8579 20 6 7.1441 7.3421 -0.8395 21 7 5.9171 7.0608 -1.2236 22 14 8.4217 7.8606 -2.0999 23 1 9.1243 6.6584 -2.6158 24 1 7.7517 8.5627 -3.2239 25 1 9.4046 8.7727 -1.4620 26 6 5.8186 5.4987 0.8514 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.7211 2.9435 -1.5337 33 1 3.0093 1.1868 -2.0159 34 1 5.9878 2.4963 0.6277 35 1 7.3205 2.9347 2.4660 36 1 7.9281 4.3671 1.6006 37 1 8.1127 4.2034 4.2319 38 1 6.4181 4.7022 4.1838 39 1 8.7157 6.1875 2.9551 40 1 7.9328 6.5603 4.5077 41 1 6.9193 8.0189 2.8571 42 1 5.7213 6.7527 3.2145 43 1 5.6763 7.1223 -2.1613 44 1 6.1878 5.1967 -0.1287 45 1 4.8013 5.8751 0.7441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034409474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:18 Heat of formation + Delta-G solvation = -7.470947 kcal Electronic energy + Delta-G solvation = -22882.887661 eV Core-core repulsion = 19708.041060 eV Total energy + Delta-G solvation = -3174.846601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.79102 -38.04799 -36.66626 -34.28802 -33.49506 -32.12614 -30.75062 -29.95117 -26.11022 -24.74963 -24.11303 -23.73058 -22.49177 -20.55455 -20.17306 -19.45987 -19.16914 -16.93475 -16.62016 -15.71117 -15.31257 -14.80927 -14.67815 -14.30996 -14.18581 -13.86244 -13.50722 -13.26493 -12.87073 -12.51456 -12.39808 -12.35874 -12.13207 -12.05088 -11.40527 -11.29675 -11.13448 -11.06933 -10.97051 -10.70613 -10.41755 -10.23254 -10.19739 -10.11912 -10.00193 -9.92584 -9.76351 -9.49794 -9.31291 -8.48095 -8.33710 -6.62104 -5.73699 -3.18862 2.89737 3.37372 3.44713 3.46222 3.51167 3.98273 4.51629 4.65470 4.81530 4.88479 5.11325 5.22104 5.24936 5.31859 5.36152 5.38038 5.49077 5.65161 5.66185 5.74424 5.77775 5.81838 5.94075 5.97367 6.04613 6.05886 6.10302 6.25542 6.35780 6.36952 6.51101 6.65245 6.68543 6.69930 6.83579 6.95318 7.03236 7.13266 7.43435 7.79168 7.86512 8.02533 8.49924 8.71928 9.26936 9.94158 10.39631 11.32421 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.004821 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.649935 B = 5806.850195 C = 6940.807799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.122 4.122 4 H 0.117 0.883 5 C -0.148 4.148 6 C -0.188 4.188 7 H 0.118 0.882 8 C 0.540 3.460 9 O -0.541 6.541 10 N -0.714 5.714 11 C 0.119 3.881 12 H 0.072 0.928 13 C -0.115 4.115 14 C -0.098 4.098 15 C -0.147 4.147 16 C 0.154 3.846 17 N -0.587 5.587 18 C -0.259 4.259 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.899 3.101 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.176 3.824 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.395 0.605 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.032 0.968 43 H 0.252 0.748 44 H 0.077 0.923 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -14.160 3.476 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.141 4.141 4 H 0.135 0.865 5 C -0.185 4.185 6 C -0.210 4.210 7 H 0.136 0.864 8 C 0.326 3.674 9 O -0.419 6.419 10 N -0.364 5.364 11 C 0.014 3.986 12 H 0.090 0.910 13 C -0.153 4.153 14 C -0.136 4.136 15 C -0.188 4.188 16 C 0.026 3.974 17 N -0.309 5.309 18 C -0.389 4.389 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.544 5.544 22 Si 0.730 3.270 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.049 3.951 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.228 0.772 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -4.115 -13.576 3.690 14.658 hybrid contribution 1.143 -0.057 -0.968 1.499 sum -2.972 -13.632 2.722 14.216 Atomic orbital electron populations 1.21740 0.95330 1.01368 1.02238 1.21138 0.96151 0.93904 1.01875 1.22449 0.91702 0.98337 1.01571 0.86480 1.23094 1.01843 1.03418 0.90165 1.22306 0.97279 0.99090 1.02294 0.86405 1.19549 0.82643 0.85323 0.79919 1.90684 1.53895 1.48668 1.48624 1.46068 1.06544 1.28144 1.55633 1.21760 0.94593 0.86823 0.95411 0.91007 1.21278 0.97496 0.98363 0.98178 1.20219 1.00389 0.96747 0.96271 1.21502 1.01850 0.95946 0.99466 1.20732 0.94866 0.96266 0.85512 1.43546 1.48783 1.35960 1.02600 1.19213 1.00739 1.29561 0.89359 0.91606 1.25056 0.95625 1.00310 0.98430 1.70099 1.16003 1.52826 1.15460 0.86337 0.81083 0.78156 0.81473 1.21565 1.21817 1.20448 1.21300 0.94644 0.84267 0.94850 0.92834 0.92490 0.92496 0.91817 0.91624 0.87947 0.88112 0.77192 0.93166 0.90120 0.93764 0.93281 0.92080 0.93465 0.93583 0.94961 0.93734 0.90503 0.95170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.87 37.16 0.37 -0.91 16 2 C -0.09 -0.87 6.22 -26.73 -0.17 -1.04 16 3 C -0.12 -1.50 5.25 -90.62 -0.48 -1.97 16 4 H 0.12 1.69 7.60 -51.93 -0.39 1.29 16 5 C -0.15 -1.84 9.88 -26.74 -0.26 -2.10 16 6 C -0.19 -2.49 5.91 -91.77 -0.54 -3.03 16 7 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 8 C 0.54 9.57 7.58 -10.99 -0.08 9.48 16 9 O -0.54 -11.88 15.92 5.56 0.09 -11.79 16 10 N -0.71 -12.07 4.97 -54.36 -0.27 -12.34 16 11 C 0.12 2.33 2.27 -68.50 -0.16 2.18 16 12 H 0.07 1.52 6.75 -51.93 -0.35 1.17 16 13 C -0.12 -1.97 5.06 -28.02 -0.14 -2.12 16 14 C -0.10 -1.61 5.15 -29.79 -0.15 -1.76 16 15 C -0.15 -2.62 5.74 -28.59 -0.16 -2.78 16 16 C 0.15 3.30 5.65 -4.09 -0.02 3.28 16 17 N -0.59 -14.66 2.27 -172.09 -0.39 -15.05 16 18 C -0.26 -7.03 9.44 -15.06 -0.14 -7.17 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 21 N -0.90 -26.38 11.01 55.49 0.61 -25.77 16 22 Si 0.90 21.67 29.58 -169.99 -5.03 16.64 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.18 4.30 4.26 -2.94 -0.01 4.29 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.10 1.00 8.03 -51.93 -0.42 0.59 16 34 H 0.39 5.47 8.54 -40.82 -0.35 5.12 16 35 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 36 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.80 7.36 -51.93 -0.38 0.42 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 42 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.08 2.07 6.31 -51.93 -0.33 1.74 16 45 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -31.44 353.66 -9.74 -41.18 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.03 Total: 5.42 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.04 Total: -3.62 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.05 Total: -53.16 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.44 -9.74 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034409474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.711 kcal (2) G-P(sol) polarization free energy of solvation -31.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds