Wall clock time and date at job start Tue Mar 31 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46872 * 2 1 4 4 H 1.08998 * 115.55223 * 29.33372 * 3 2 1 5 5 C 1.52999 * 117.51986 * 243.62503 * 3 2 1 6 6 C 1.52991 * 60.00350 * 252.52312 * 5 3 2 7 7 H 1.09000 * 117.52126 * 107.47548 * 6 5 3 8 8 C 1.50703 * 117.50199 * 252.51299 * 6 5 3 9 9 O 1.21282 * 120.00160 * 68.61470 * 8 6 5 10 10 N 1.34772 * 119.99926 * 248.62429 * 8 6 5 11 11 C 1.46494 * 120.00248 * 179.97438 * 10 8 6 12 12 H 1.09001 * 109.37017 * 34.99647 * 11 10 8 13 13 C 1.50878 * 109.26934 * 154.67989 * 11 10 8 14 14 C 1.52566 * 109.36528 * 212.01769 * 13 11 10 15 15 C 1.47091 * 114.32424 * 274.98930 * 14 13 11 16 16 C 1.54856 * 110.32541 * 62.79138 * 15 14 13 17 17 N 1.44579 * 109.60818 * 288.73609 * 16 15 14 18 18 C 1.36934 * 118.64294 * 270.75215 * 17 16 15 19 19 H 1.07993 * 120.00350 * 26.48474 * 18 17 16 20 20 C 1.38816 * 119.99350 * 206.49022 * 18 17 16 21 21 N 1.31614 * 120.00372 * 15.67918 * 20 18 17 22 22 Si 1.86805 * 119.99552 * 195.67313 * 20 18 17 23 23 H 1.48502 * 109.46874 * 90.00315 * 22 20 18 24 24 H 1.48504 * 109.47037 * 209.99909 * 22 20 18 25 25 H 1.48493 * 109.47368 * 330.00339 * 22 20 18 26 26 C 1.47607 * 122.71174 * 90.72328 * 17 16 15 27 27 H 1.08999 * 109.47292 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47351 * 299.99828 * 1 2 3 29 29 H 1.09002 * 109.47417 * 59.99798 * 1 2 3 30 30 H 1.09001 * 109.46843 * 240.00188 * 2 1 3 31 31 H 1.08996 * 109.47062 * 120.00466 * 2 1 3 32 32 H 1.09005 * 117.49894 * 145.02908 * 5 3 2 33 33 H 1.08998 * 117.49844 * 0.02562 * 5 3 2 34 34 H 0.97005 * 120.00000 * 359.97438 * 10 8 6 35 35 H 1.09006 * 109.48709 * 331.98546 * 13 11 10 36 36 H 1.09005 * 109.49117 * 92.04511 * 13 11 10 37 37 H 1.08998 * 108.51729 * 153.72802 * 14 13 11 38 38 H 1.09004 * 108.51191 * 36.23776 * 14 13 11 39 39 H 1.09005 * 109.32648 * 302.53323 * 15 14 13 40 40 H 1.09001 * 109.19251 * 182.97345 * 15 14 13 41 41 H 1.09002 * 109.44938 * 168.69130 * 16 15 14 42 42 H 1.08997 * 109.44975 * 48.78133 * 16 15 14 43 43 H 0.97003 * 120.00048 * 180.02562 * 21 20 18 44 44 H 1.08993 * 108.94948 * 197.19058 * 26 17 16 45 45 H 1.09000 * 108.94521 * 78.55261 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9081 -1.2156 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7719 0.1961 8 6 4.0228 2.8617 0.8920 9 8 3.2157 3.6162 1.3924 10 7 5.3423 3.0999 1.0277 11 6 5.8018 4.2704 1.7794 12 1 5.1224 4.4553 2.6114 13 6 7.1876 4.0059 2.3144 14 6 7.3642 4.7339 3.6434 15 6 7.7812 6.1386 3.5141 16 6 6.6959 6.9556 2.7706 17 7 6.6769 6.5796 1.3747 18 6 7.4889 7.2537 0.5022 19 1 8.3975 7.7165 0.8579 20 6 7.1441 7.3421 -0.8395 21 7 5.9171 7.0608 -1.2236 22 14 8.4217 7.8606 -2.0999 23 1 9.1243 6.6584 -2.6158 24 1 7.7517 8.5627 -3.2239 25 1 9.4046 8.7727 -1.4620 26 6 5.8186 5.4987 0.8514 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.7211 2.9435 -1.5337 33 1 3.0093 1.1868 -2.0159 34 1 5.9878 2.4963 0.6277 35 1 7.3205 2.9347 2.4660 36 1 7.9281 4.3671 1.6006 37 1 8.1127 4.2034 4.2319 38 1 6.4181 4.7022 4.1838 39 1 8.7157 6.1875 2.9551 40 1 7.9328 6.5603 4.5077 41 1 6.9193 8.0189 2.8571 42 1 5.7213 6.7527 3.2145 43 1 5.6763 7.1223 -2.1613 44 1 6.1878 5.1967 -0.1287 45 1 4.8013 5.8751 0.7441 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034409474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:17 Heat of formation + Delta-G solvation = -26.428402 kcal Electronic energy + Delta-G solvation = -22883.709718 eV Core-core repulsion = 19708.041060 eV Total energy + Delta-G solvation = -3175.668658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20852 -39.55335 -37.92302 -36.01235 -35.19202 -32.97142 -32.69230 -31.53139 -27.99492 -26.23365 -25.70958 -24.69912 -24.06206 -21.76850 -21.45688 -20.99009 -20.71448 -18.61049 -18.23134 -17.30711 -17.03438 -16.12061 -16.02697 -15.68804 -15.46480 -15.37088 -15.04010 -14.89342 -14.33968 -14.11082 -13.79182 -13.51216 -13.36895 -13.02524 -12.98706 -12.95581 -12.83142 -12.47095 -12.22101 -12.14497 -12.05987 -11.92029 -11.87927 -11.55752 -11.41892 -11.22512 -11.17509 -11.01103 -10.72430 -10.51176 -10.00951 -8.68301 -7.85364 -5.34683 1.45546 1.45859 1.53515 1.55944 2.17048 2.51626 2.89010 3.26479 3.57350 3.74400 3.79311 3.87122 3.94137 4.06365 4.18742 4.28102 4.29284 4.40837 4.43937 4.50056 4.59254 4.64158 4.78012 4.82317 4.92800 4.94725 4.99006 5.06900 5.13655 5.15947 5.24176 5.27492 5.29790 5.31431 5.40343 5.45220 5.51060 5.55427 5.62486 5.67498 5.79872 6.38059 6.64135 7.14839 7.33456 7.91283 8.32538 9.18822 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.004821 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.649935 B = 5806.850195 C = 6940.807799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.086 4.086 3 C -0.118 4.118 4 H 0.086 0.914 5 C -0.145 4.145 6 C -0.188 4.188 7 H 0.159 0.841 8 C 0.530 3.470 9 O -0.594 6.594 10 N -0.706 5.706 11 C 0.135 3.865 12 H 0.055 0.945 13 C -0.106 4.106 14 C -0.100 4.100 15 C -0.132 4.132 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.263 4.263 19 H 0.071 0.929 20 C -0.051 4.051 21 N -0.938 5.938 22 Si 0.967 3.033 23 H -0.281 1.281 24 H -0.299 1.299 25 H -0.267 1.267 26 C 0.197 3.803 27 H 0.072 0.928 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.413 0.587 35 H 0.087 0.913 36 H 0.060 0.940 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.038 0.962 42 H 0.027 0.973 43 H 0.246 0.754 44 H 0.048 0.952 45 H -0.031 1.031 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 -16.859 4.028 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 C -0.137 4.137 4 H 0.104 0.896 5 C -0.182 4.182 6 C -0.209 4.209 7 H 0.176 0.824 8 C 0.318 3.682 9 O -0.474 6.474 10 N -0.356 5.356 11 C 0.028 3.972 12 H 0.073 0.927 13 C -0.144 4.144 14 C -0.138 4.138 15 C -0.172 4.172 16 C 0.019 3.981 17 N -0.324 5.324 18 C -0.393 4.393 19 H 0.089 0.911 20 C -0.246 4.246 21 N -0.584 5.584 22 Si 0.795 3.205 23 H -0.208 1.208 24 H -0.226 1.226 25 H -0.192 1.192 26 C 0.071 3.929 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.250 0.750 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.067 0.933 45 H -0.012 1.012 Dipole moment (debyes) X Y Z Total from point charges -2.179 -16.300 4.269 16.990 hybrid contribution 0.479 0.886 -1.092 1.485 sum -1.701 -15.414 3.178 15.830 Atomic orbital electron populations 1.21756 0.95052 1.02388 1.01628 1.21152 0.96352 0.91479 1.03323 1.22488 0.90669 0.99782 1.00760 0.89612 1.23157 1.01579 1.02626 0.90884 1.22369 0.98464 0.98123 1.01923 0.82389 1.20457 0.82289 0.86122 0.79324 1.90660 1.55169 1.50825 1.50795 1.45970 1.07022 1.27392 1.55237 1.21333 0.96313 0.85766 0.93741 0.92726 1.21213 0.94345 1.00787 0.98036 1.20241 1.01583 0.95944 0.96060 1.21316 0.99353 0.96427 1.00061 1.20954 0.96246 0.96721 0.84211 1.43761 1.48380 1.36411 1.03813 1.19555 1.00892 1.28975 0.89926 0.91103 1.25849 0.97309 1.01062 1.00362 1.70308 1.18100 1.54792 1.15223 0.85266 0.78664 0.77945 0.78584 1.20799 1.22642 1.19157 1.20899 0.90909 0.86076 0.95049 0.90929 0.93559 0.92797 0.89686 0.90694 0.91188 0.84535 0.75020 0.89451 0.92137 0.90143 0.93154 0.92980 0.90445 0.94377 0.95490 0.94453 0.93313 1.01243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.87 71.98 0.71 -1.63 16 2 C -0.09 -1.38 6.22 30.59 0.19 -1.19 16 3 C -0.12 -2.84 5.25 -10.79 -0.06 -2.89 16 4 H 0.09 2.62 7.60 -2.39 -0.02 2.60 16 5 C -0.15 -3.51 9.88 30.59 0.30 -3.20 16 6 C -0.19 -4.74 5.91 -11.54 -0.07 -4.81 16 7 H 0.16 2.71 8.14 -2.39 -0.02 2.69 16 8 C 0.53 19.19 7.58 87.66 0.66 19.85 16 9 O -0.59 -27.66 15.92 -3.03 -0.05 -27.71 16 10 N -0.71 -23.80 4.97 -444.30 -2.21 -26.00 16 11 C 0.13 5.35 2.27 44.63 0.10 5.46 16 12 H 0.05 2.39 6.75 -2.39 -0.02 2.37 16 13 C -0.11 -3.42 5.06 29.76 0.15 -3.27 16 14 C -0.10 -2.99 5.15 28.61 0.15 -2.84 16 15 C -0.13 -4.41 5.74 29.39 0.17 -4.24 16 16 C 0.15 6.29 5.65 87.37 0.49 6.78 16 17 N -0.60 -31.00 2.27 -698.38 -1.59 -32.59 16 18 C -0.26 -14.58 9.44 84.03 0.79 -13.79 16 19 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 20 C -0.05 -2.88 4.87 84.86 0.41 -2.47 16 21 N -0.94 -57.72 11.01 21.65 0.24 -57.48 16 22 Si 0.97 45.30 29.58 68.60 2.03 47.33 16 23 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.20 10.21 4.26 86.49 0.37 10.58 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.06 7.88 -2.39 -0.02 1.04 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.14 2.32 8.03 -2.39 -0.02 2.30 16 34 H 0.41 10.78 8.54 -92.70 -0.79 9.99 16 35 H 0.09 2.21 7.94 -2.38 -0.02 2.19 16 36 H 0.06 2.25 7.48 -2.38 -0.02 2.23 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.52 7.36 -2.39 -0.02 1.50 16 39 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.04 1.67 7.99 -2.39 -0.02 1.65 16 42 H 0.03 1.17 8.07 -2.39 -0.02 1.15 16 43 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 44 H 0.05 2.76 6.31 -2.39 -0.02 2.75 16 45 H -0.03 -1.92 8.03 -2.39 -0.02 -1.93 16 Total: -1.00 -74.09 353.66 2.97 -71.12 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.16 Total: 23.02 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 4.38 Total: 2.31 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -3.56 Total: -116.08 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -74.09 2.97 -71.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034409474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.693 kcal (2) G-P(sol) polarization free energy of solvation -74.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds