Wall clock time and date at job start Tue Mar 31 2020 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46767 * 2 1 4 4 C 1.50703 * 109.46525 * 119.99876 * 2 1 3 5 5 O 1.21287 * 119.99740 * 261.03051 * 4 2 1 6 6 N 1.34772 * 120.00225 * 81.03014 * 4 2 1 7 7 C 1.46938 * 120.55523 * 184.99333 * 6 4 2 8 8 C 1.53341 * 108.68511 * 125.66859 * 7 6 4 9 9 C 1.52106 * 109.44105 * 53.30923 * 8 7 6 10 10 C 1.54387 * 110.51325 * 64.08709 * 9 8 7 11 11 C 1.54452 * 102.86893 * 83.32798 * 10 9 8 12 12 N 1.47083 * 107.30011 * 21.50758 * 11 10 9 13 13 C 1.36932 * 125.62713 * 180.96204 * 12 11 10 14 14 H 1.08011 * 119.99895 * 183.36226 * 13 12 11 15 15 C 1.38803 * 120.00543 * 3.37107 * 13 12 11 16 16 N 1.31621 * 120.00261 * 210.86705 * 15 13 12 17 17 Si 1.86798 * 120.00211 * 30.85710 * 15 13 12 18 18 H 1.48505 * 109.47270 * 275.66676 * 17 15 13 19 19 H 1.48504 * 109.46855 * 35.66218 * 17 15 13 20 20 H 1.48502 * 109.47421 * 155.66153 * 17 15 13 21 21 C 1.47576 * 108.74026 * 1.22884 * 12 11 10 22 22 C 1.52105 * 111.59628 * 300.68453 * 9 8 7 23 23 C 1.46934 * 120.55176 * 5.01073 * 6 4 2 24 24 H 1.09011 * 109.46685 * 64.79338 * 1 2 3 25 25 H 1.08998 * 109.47143 * 184.78411 * 1 2 3 26 26 H 1.08993 * 109.47533 * 304.79141 * 1 2 3 27 27 H 1.08990 * 109.47143 * 239.99570 * 2 1 3 28 28 H 1.09004 * 109.46679 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47291 * 299.99466 * 3 2 1 30 30 H 1.09001 * 109.47253 * 60.00119 * 3 2 1 31 31 H 1.09008 * 109.59710 * 5.90862 * 7 6 4 32 32 H 1.08996 * 109.73245 * 245.51238 * 7 6 4 33 33 H 1.08993 * 109.47557 * 293.31083 * 8 7 6 34 34 H 1.09004 * 109.47756 * 173.30383 * 8 7 6 35 35 H 1.09003 * 110.72941 * 324.98752 * 10 9 8 36 36 H 1.08998 * 110.73260 * 201.67668 * 10 9 8 37 37 H 1.09003 * 109.88243 * 262.07921 * 11 10 9 38 38 H 1.09001 * 109.87887 * 140.92978 * 11 10 9 39 39 H 0.97004 * 120.00106 * 5.07370 * 16 15 13 40 40 H 1.09004 * 110.37575 * 95.26104 * 21 12 11 41 41 H 1.08998 * 110.37367 * 217.60876 * 21 12 11 42 42 H 1.09004 * 109.47048 * 179.29568 * 22 9 8 43 43 H 1.08997 * 109.47923 * 299.31403 * 22 9 8 44 44 H 1.09002 * 109.59973 * 354.09015 * 23 6 4 45 45 H 1.09000 * 109.59944 * 114.56310 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3887 -0.0704 2.1972 6 7 2.0852 -2.0568 1.2569 7 6 2.4685 -2.7654 2.4858 8 6 1.3728 -3.7819 2.8288 9 6 1.1102 -4.6697 1.6220 10 6 2.3625 -5.5067 1.2833 11 6 2.2446 -6.7077 2.2472 12 7 0.8326 -6.8119 2.6455 13 6 0.3139 -7.7390 3.5095 14 1 -0.7495 -7.7669 3.6970 15 6 1.1544 -8.6427 4.1446 16 7 0.7146 -9.8434 4.4567 17 14 2.9101 -8.1552 4.5561 18 1 3.7766 -8.3784 3.3709 19 1 2.9493 -6.7197 4.9346 20 1 3.4001 -8.9796 5.6899 21 6 0.0661 -5.7566 1.9552 22 6 0.6696 -3.8568 0.4142 23 6 1.7611 -2.8407 0.0572 24 1 -0.3633 0.4377 -0.9299 25 1 -0.3633 -1.0241 0.0857 26 1 -0.3634 0.5863 0.8439 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.5730 -2.0508 3.3024 32 1 3.4141 -3.2850 2.3313 33 1 0.4581 -3.2535 3.0973 34 1 1.6972 -4.3965 3.6685 35 1 3.2715 -4.9392 1.4833 36 1 2.3348 -5.8401 0.2460 37 1 2.8663 -6.5397 3.1266 38 1 2.5551 -7.6215 1.7405 39 1 -0.1715 -10.1229 4.1781 40 1 -0.3819 -6.1485 1.0420 41 1 -0.7033 -5.3538 2.6139 42 1 0.5035 -4.5239 -0.4317 43 1 -0.2551 -3.3296 0.6486 44 1 1.3994 -2.1759 -0.7273 45 1 2.6515 -3.3664 -0.2877 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035161702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:24 Heat of formation + Delta-G solvation = -16.572204 kcal Electronic energy + Delta-G solvation = -23565.685296 eV Core-core repulsion = 20390.444034 eV Total energy + Delta-G solvation = -3175.241261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69328 -38.96206 -36.01957 -34.75777 -33.10808 -31.29415 -31.06784 -29.01426 -27.44260 -27.21442 -24.39875 -23.74792 -22.86822 -22.17384 -20.37827 -19.44346 -18.11645 -17.55490 -16.98627 -15.96895 -15.54576 -15.27037 -14.98947 -14.71747 -14.14102 -13.84606 -13.64045 -13.48579 -13.18166 -12.93900 -12.74467 -12.62179 -12.43747 -12.35414 -12.20968 -11.75649 -11.45163 -11.40359 -11.20766 -11.15373 -11.09335 -10.91546 -10.53669 -10.34150 -10.25467 -9.93312 -9.65156 -9.58307 -9.14622 -8.61623 -8.40079 -7.05657 -6.35615 -3.12091 2.56022 2.93821 3.45095 3.53789 3.71538 4.28992 4.58572 4.64875 4.65834 4.71961 4.80110 4.91354 4.99683 5.03003 5.15977 5.25224 5.33701 5.36793 5.42183 5.46918 5.48396 5.55803 5.63373 5.69448 5.70364 5.79539 5.81792 5.88562 5.93727 5.99181 6.02980 6.07144 6.26113 6.33321 6.35947 6.52416 6.57476 6.65371 6.76191 6.84357 7.36616 7.71839 8.12571 8.35564 9.04415 9.61949 10.28955 11.13826 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.004467 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.976238 B = 6266.166800 C = 6583.612612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.134 4.134 4 C 0.517 3.483 5 O -0.546 6.546 6 N -0.607 5.607 7 C 0.110 3.890 8 C -0.112 4.112 9 C -0.074 4.074 10 C -0.122 4.122 11 C 0.117 3.883 12 N -0.608 5.608 13 C -0.333 4.333 14 H 0.078 0.922 15 C -0.014 4.014 16 N -0.912 5.912 17 Si 1.052 2.948 18 H -0.294 1.294 19 H -0.294 1.294 20 H -0.300 1.300 21 C 0.149 3.851 22 C -0.117 4.117 23 C 0.105 3.895 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.037 0.963 39 H 0.264 0.736 40 H 0.025 0.975 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 18.704 -13.024 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.191 4.191 4 C 0.305 3.695 5 O -0.423 6.423 6 N -0.340 5.340 7 C -0.012 4.012 8 C -0.151 4.151 9 C -0.075 4.075 10 C -0.160 4.160 11 C -0.008 4.008 12 N -0.335 5.335 13 C -0.460 4.460 14 H 0.096 0.904 15 C -0.215 4.215 16 N -0.551 5.551 17 Si 0.885 3.115 18 H -0.222 1.222 19 H -0.222 1.222 20 H -0.228 1.228 21 C 0.023 3.977 22 C -0.155 4.155 23 C -0.018 4.018 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.298 18.433 -11.669 22.063 hybrid contribution -1.377 0.346 -0.753 1.608 sum 1.920 18.779 -12.422 22.597 Atomic orbital electron populations 1.21772 0.92558 1.02883 1.02832 1.21321 0.97895 0.97780 0.96720 1.21638 1.01300 0.93851 1.02329 1.20687 0.77459 0.81823 0.89516 1.90672 1.48728 1.65562 1.37379 1.48154 1.67670 1.05402 1.12790 1.21724 0.97720 0.94872 0.86845 1.21648 0.98578 0.96428 0.98404 1.21145 0.97146 0.94877 0.94330 1.22642 0.97177 0.96634 0.99515 1.21647 0.87780 0.95921 0.95434 1.44828 1.02346 1.34943 1.51428 1.19989 0.93896 1.08913 1.23176 0.90425 1.25628 1.04320 0.92927 0.98598 1.70894 1.19765 1.15084 1.49386 0.84038 0.77037 0.74343 0.76098 1.22217 1.22181 1.22804 1.21548 0.93113 0.87575 0.95511 1.21740 0.97985 0.97402 0.98403 1.21884 0.98925 0.94101 0.86857 0.91426 0.91839 0.91923 0.88996 0.92441 0.92072 0.91562 0.89258 0.91336 0.91845 0.89696 0.91508 0.91425 0.95554 0.94491 0.92622 0.95731 0.94084 0.90413 0.91527 0.89708 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.95 37.16 0.33 -0.78 16 2 C -0.12 -1.04 2.39 -91.77 -0.22 -1.26 16 3 C -0.13 -1.16 8.67 37.16 0.32 -0.83 16 4 C 0.52 6.59 6.84 -10.99 -0.08 6.52 16 5 O -0.55 -9.02 15.47 5.55 0.09 -8.93 16 6 N -0.61 -7.33 2.96 -172.57 -0.51 -7.84 16 7 C 0.11 1.52 6.11 -3.63 -0.02 1.50 16 8 C -0.11 -1.73 4.87 -27.01 -0.13 -1.86 16 9 C -0.07 -1.11 0.55 -153.99 -0.08 -1.19 16 10 C -0.12 -1.92 4.92 -25.24 -0.12 -2.05 16 11 C 0.12 2.51 4.51 -2.96 -0.01 2.50 16 12 N -0.61 -14.67 3.33 -170.17 -0.57 -15.23 16 13 C -0.33 -9.51 10.41 -15.06 -0.16 -9.67 16 14 H 0.08 2.34 8.06 -52.48 -0.42 1.91 16 15 C -0.01 -0.40 5.42 -17.43 -0.09 -0.50 16 16 N -0.91 -28.57 13.70 55.49 0.76 -27.81 16 17 Si 1.05 26.78 24.66 -169.99 -4.19 22.59 16 18 H -0.29 -7.07 6.57 56.52 0.37 -6.70 16 19 H -0.29 -7.14 6.72 56.52 0.38 -6.76 16 20 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 21 C 0.15 2.87 6.16 -2.75 -0.02 2.85 16 22 C -0.12 -1.30 4.84 -27.01 -0.13 -1.43 16 23 C 0.11 1.01 5.65 -3.63 -0.02 0.99 16 24 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 25 H 0.06 0.51 7.40 -51.93 -0.38 0.12 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.65 6.47 -51.93 -0.34 0.31 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 31 H 0.09 1.33 7.02 -51.92 -0.36 0.96 16 32 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.54 7.82 -51.93 -0.41 1.13 16 35 H 0.07 0.95 6.18 -51.93 -0.32 0.62 16 36 H 0.07 0.96 7.98 -51.93 -0.41 0.54 16 37 H 0.03 0.61 3.98 -51.93 -0.21 0.40 16 38 H 0.04 0.85 7.54 -51.93 -0.39 0.46 16 39 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 40 H 0.02 0.47 8.00 -51.93 -0.42 0.06 16 41 H 0.04 0.81 8.03 -51.93 -0.42 0.40 16 42 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 43 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 44 H 0.08 0.61 5.09 -51.93 -0.26 0.34 16 45 H 0.07 0.65 7.62 -51.93 -0.40 0.26 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -33.21 332.02 -7.50 -40.71 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -7.65 Total: -3.27 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -0.43 Total: -5.22 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.32 Total: -50.89 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.19 Total: 22.59 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.21 -7.50 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035161702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.142 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds