Wall clock time and date at job start Tue Mar 31 2020 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46767 * 2 1 4 4 C 1.50703 * 109.46525 * 119.99876 * 2 1 3 5 5 O 1.21287 * 119.99740 * 261.03051 * 4 2 1 6 6 N 1.34772 * 120.00225 * 81.03014 * 4 2 1 7 7 C 1.46938 * 120.55523 * 184.99333 * 6 4 2 8 8 C 1.53341 * 108.68511 * 125.66859 * 7 6 4 9 9 C 1.52106 * 109.44105 * 53.30923 * 8 7 6 10 10 C 1.54387 * 110.51325 * 64.08709 * 9 8 7 11 11 C 1.54452 * 102.86893 * 83.32798 * 10 9 8 12 12 N 1.47083 * 107.30011 * 21.50758 * 11 10 9 13 13 C 1.36932 * 125.62713 * 180.96204 * 12 11 10 14 14 H 1.08011 * 119.99895 * 183.36226 * 13 12 11 15 15 C 1.38803 * 120.00543 * 3.37107 * 13 12 11 16 16 N 1.31621 * 120.00261 * 210.86705 * 15 13 12 17 17 Si 1.86798 * 120.00211 * 30.85710 * 15 13 12 18 18 H 1.48505 * 109.47270 * 275.66676 * 17 15 13 19 19 H 1.48504 * 109.46855 * 35.66218 * 17 15 13 20 20 H 1.48502 * 109.47421 * 155.66153 * 17 15 13 21 21 C 1.47576 * 108.74026 * 1.22884 * 12 11 10 22 22 C 1.52105 * 111.59628 * 300.68453 * 9 8 7 23 23 C 1.46934 * 120.55176 * 5.01073 * 6 4 2 24 24 H 1.09011 * 109.46685 * 64.79338 * 1 2 3 25 25 H 1.08998 * 109.47143 * 184.78411 * 1 2 3 26 26 H 1.08993 * 109.47533 * 304.79141 * 1 2 3 27 27 H 1.08990 * 109.47143 * 239.99570 * 2 1 3 28 28 H 1.09004 * 109.46679 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47291 * 299.99466 * 3 2 1 30 30 H 1.09001 * 109.47253 * 60.00119 * 3 2 1 31 31 H 1.09008 * 109.59710 * 5.90862 * 7 6 4 32 32 H 1.08996 * 109.73245 * 245.51238 * 7 6 4 33 33 H 1.08993 * 109.47557 * 293.31083 * 8 7 6 34 34 H 1.09004 * 109.47756 * 173.30383 * 8 7 6 35 35 H 1.09003 * 110.72941 * 324.98752 * 10 9 8 36 36 H 1.08998 * 110.73260 * 201.67668 * 10 9 8 37 37 H 1.09003 * 109.88243 * 262.07921 * 11 10 9 38 38 H 1.09001 * 109.87887 * 140.92978 * 11 10 9 39 39 H 0.97004 * 120.00106 * 5.07370 * 16 15 13 40 40 H 1.09004 * 110.37575 * 95.26104 * 21 12 11 41 41 H 1.08998 * 110.37367 * 217.60876 * 21 12 11 42 42 H 1.09004 * 109.47048 * 179.29568 * 22 9 8 43 43 H 1.08997 * 109.47923 * 299.31403 * 22 9 8 44 44 H 1.09002 * 109.59973 * 354.09015 * 23 6 4 45 45 H 1.09000 * 109.59944 * 114.56310 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.3887 -0.0704 2.1972 6 7 2.0852 -2.0568 1.2569 7 6 2.4685 -2.7654 2.4858 8 6 1.3728 -3.7819 2.8288 9 6 1.1102 -4.6697 1.6220 10 6 2.3625 -5.5067 1.2833 11 6 2.2446 -6.7077 2.2472 12 7 0.8326 -6.8119 2.6455 13 6 0.3139 -7.7390 3.5095 14 1 -0.7495 -7.7669 3.6970 15 6 1.1544 -8.6427 4.1446 16 7 0.7146 -9.8434 4.4567 17 14 2.9101 -8.1552 4.5561 18 1 3.7766 -8.3784 3.3709 19 1 2.9493 -6.7197 4.9346 20 1 3.4001 -8.9796 5.6899 21 6 0.0661 -5.7566 1.9552 22 6 0.6696 -3.8568 0.4142 23 6 1.7611 -2.8407 0.0572 24 1 -0.3633 0.4377 -0.9299 25 1 -0.3633 -1.0241 0.0857 26 1 -0.3634 0.5863 0.8439 27 1 1.8934 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.5730 -2.0508 3.3024 32 1 3.4141 -3.2850 2.3313 33 1 0.4581 -3.2535 3.0973 34 1 1.6972 -4.3965 3.6685 35 1 3.2715 -4.9392 1.4833 36 1 2.3348 -5.8401 0.2460 37 1 2.8663 -6.5397 3.1266 38 1 2.5551 -7.6215 1.7405 39 1 -0.1715 -10.1229 4.1781 40 1 -0.3819 -6.1485 1.0420 41 1 -0.7033 -5.3538 2.6139 42 1 0.5035 -4.5239 -0.4317 43 1 -0.2551 -3.3296 0.6486 44 1 1.3994 -2.1759 -0.7273 45 1 2.6515 -3.3664 -0.2877 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035161702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:24 Heat of formation + Delta-G solvation = -38.816391 kcal Electronic energy + Delta-G solvation = -23566.649876 eV Core-core repulsion = 20390.444034 eV Total energy + Delta-G solvation = -3176.205842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74344 -40.19380 -37.36299 -35.55590 -34.85790 -32.95074 -32.13168 -30.59563 -28.67515 -28.01298 -25.68893 -25.12251 -24.06999 -23.20723 -22.13886 -20.50901 -19.68794 -18.73247 -18.29614 -17.10160 -16.90335 -16.57135 -16.25823 -15.69916 -15.36052 -15.31955 -15.13491 -14.71863 -14.36169 -14.29806 -13.94075 -13.72353 -13.45857 -13.22816 -13.05874 -12.99629 -12.91056 -12.78895 -12.58612 -12.19724 -12.06678 -12.00871 -11.93311 -11.77212 -11.63732 -11.49111 -11.23541 -11.01404 -10.60240 -10.59262 -9.61409 -9.10680 -8.69320 -5.36357 1.37891 1.48823 1.62851 1.68227 2.03357 2.52629 2.97626 3.38140 3.50326 3.55877 3.73990 3.82291 3.97590 4.06454 4.09790 4.13379 4.23662 4.35042 4.41782 4.44526 4.61502 4.64679 4.72889 4.75372 4.78423 4.80454 4.86798 4.90038 4.92108 4.95582 5.05779 5.05927 5.09344 5.11338 5.24782 5.31774 5.33604 5.40636 5.46076 5.56648 5.62738 6.10862 6.46307 6.82939 7.19137 7.50899 8.15738 8.82110 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035257 B = 0.004467 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.976238 B = 6266.166800 C = 6583.612612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.509 3.491 5 O -0.593 6.593 6 N -0.606 5.606 7 C 0.118 3.882 8 C -0.106 4.106 9 C -0.060 4.060 10 C -0.108 4.108 11 C 0.106 3.894 12 N -0.629 5.629 13 C -0.323 4.323 14 H 0.046 0.954 15 C -0.070 4.070 16 N -0.949 5.949 17 Si 1.096 2.904 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.308 1.308 21 C 0.142 3.858 22 C -0.111 4.111 23 C 0.104 3.896 24 H 0.094 0.906 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.124 0.876 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.017 0.983 38 H 0.022 0.978 39 H 0.251 0.749 40 H 0.035 0.965 41 H 0.026 0.974 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.976 20.931 -16.567 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 C -0.191 4.191 4 C 0.300 3.700 5 O -0.474 6.474 6 N -0.338 5.338 7 C -0.005 4.005 8 C -0.145 4.145 9 C -0.062 4.062 10 C -0.146 4.146 11 C -0.018 4.018 12 N -0.356 5.356 13 C -0.451 4.451 14 H 0.064 0.936 15 C -0.265 4.265 16 N -0.592 5.592 17 Si 0.925 3.075 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.237 1.237 21 C 0.017 3.983 22 C -0.149 4.149 23 C -0.017 4.017 24 H 0.113 0.887 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.142 0.858 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.117 0.883 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.472 20.690 -15.272 26.102 hybrid contribution -1.892 -0.329 0.362 1.955 sum 2.580 20.361 -14.910 25.368 Atomic orbital electron populations 1.21790 0.91545 1.02964 1.03532 1.21409 0.98505 0.97501 0.95637 1.21648 1.00845 0.93985 1.02595 1.21497 0.76502 0.81847 0.90198 1.90656 1.50764 1.66549 1.39426 1.48251 1.67160 1.05519 1.12868 1.21494 0.97319 0.94073 0.87628 1.21532 0.98859 0.96422 0.97673 1.21055 0.95320 0.93892 0.95884 1.22653 0.98300 0.94215 0.99416 1.21820 0.85760 0.97967 0.96266 1.44934 1.04429 1.35453 1.50818 1.19898 0.92608 1.09483 1.23139 0.93619 1.26780 1.07927 0.92630 0.99168 1.70990 1.19517 1.16707 1.51960 0.83431 0.73273 0.74450 0.76384 1.19561 1.20750 1.23724 1.21766 0.93836 0.87833 0.94841 1.21725 0.98753 0.97607 0.96806 1.22139 0.99085 0.94133 0.86337 0.88721 0.91626 0.93728 0.85802 0.93196 0.89282 0.93796 0.91066 0.90331 0.92526 0.93038 0.89140 0.88640 0.96538 0.95996 0.94041 0.94738 0.95571 0.88278 0.91124 0.86240 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.95 71.98 0.64 -1.01 16 2 C -0.11 -1.53 2.39 -11.54 -0.03 -1.56 16 3 C -0.13 -1.94 8.67 71.98 0.62 -1.32 16 4 C 0.51 11.73 6.84 87.66 0.60 12.33 16 5 O -0.59 -19.26 15.47 -3.05 -0.05 -19.31 16 6 N -0.61 -12.59 2.96 -818.26 -2.42 -15.01 16 7 C 0.12 3.02 6.11 86.41 0.53 3.55 16 8 C -0.11 -3.15 4.87 30.41 0.15 -3.00 16 9 C -0.06 -1.65 0.55 -51.84 -0.03 -1.68 16 10 C -0.11 -3.00 4.92 31.56 0.16 -2.85 16 11 C 0.11 4.39 4.51 86.76 0.39 4.78 16 12 N -0.63 -30.37 3.33 -692.30 -2.30 -32.67 16 13 C -0.32 -19.03 10.41 84.03 0.87 -18.16 16 14 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 15 C -0.07 -4.25 5.42 84.86 0.46 -3.79 16 16 N -0.95 -61.73 13.70 21.65 0.30 -61.44 16 17 Si 1.10 55.01 24.66 68.60 1.69 56.70 16 18 H -0.27 -12.31 6.57 99.48 0.65 -11.66 16 19 H -0.28 -13.27 6.72 99.48 0.67 -12.60 16 20 H -0.31 -15.79 7.11 99.48 0.71 -15.09 16 21 C 0.14 5.34 6.16 86.63 0.53 5.88 16 22 C -0.11 -1.94 4.84 30.41 0.15 -1.79 16 23 C 0.10 1.41 5.65 86.41 0.49 1.90 16 24 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.06 0.76 7.40 -2.39 -0.02 0.74 16 26 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.12 0.97 6.47 -2.39 -0.02 0.95 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.83 7.89 -2.39 -0.02 0.81 16 31 H 0.07 2.10 7.02 -2.38 -0.02 2.09 16 32 H 0.08 1.86 6.55 -2.39 -0.02 1.85 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.86 7.82 -2.38 -0.02 1.85 16 35 H 0.09 2.14 6.18 -2.39 -0.01 2.12 16 36 H 0.10 2.18 7.98 -2.39 -0.02 2.16 16 37 H 0.02 0.74 3.98 -2.39 -0.01 0.73 16 38 H 0.02 0.97 7.54 -2.39 -0.02 0.96 16 39 H 0.25 16.33 8.73 -92.71 -0.81 15.52 16 40 H 0.03 1.25 8.00 -2.39 -0.02 1.23 16 41 H 0.03 1.04 8.03 -2.39 -0.02 1.02 16 42 H 0.10 1.43 8.09 -2.38 -0.02 1.41 16 43 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 44 H 0.12 0.88 5.09 -2.39 -0.01 0.86 16 45 H 0.09 1.01 7.62 -2.39 -0.02 0.99 16 Total: -1.00 -77.43 332.02 3.58 -73.84 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 0.83 Total: 4.60 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 5.54 Total: -6.72 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.43 Total: -109.12 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.05 Total: -19.31 kcal Atomic # 14 Polarization: 55.01 SS G_CDS: 1.69 Total: 56.70 kcal Total: -77.43 3.58 -73.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035161702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.028 kcal (2) G-P(sol) polarization free energy of solvation -77.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds