Wall clock time and date at job start Tue Mar 31 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 H 1.09001 * 109.47166 * 54.99583 * 3 2 1 5 5 C 1.53001 * 109.47105 * 295.00059 * 3 2 1 6 6 C 1.50702 * 109.46991 * 174.99969 * 3 2 1 7 7 O 1.21276 * 120.00216 * 34.63726 * 6 3 2 8 8 N 1.34780 * 119.99749 * 214.64092 * 6 3 2 9 9 C 1.46893 * 120.46201 * 174.53374 * 8 6 3 10 10 C 1.53349 * 108.74144 * 124.38767 * 9 8 6 11 11 C 1.52561 * 109.12816 * 52.25808 * 10 9 8 12 12 C 1.52962 * 114.05905 * 75.53953 * 11 10 9 13 13 N 1.47166 * 87.85059 * 139.44183 * 12 11 10 14 14 C 1.36934 * 135.99794 * 153.08203 * 13 12 11 15 15 H 1.08002 * 120.00140 * 359.97438 * 14 13 12 16 16 C 1.38816 * 119.99833 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00133 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99823 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47371 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47391 * 120.00348 * 18 16 14 21 21 H 1.48508 * 109.46749 * 239.99604 * 18 16 14 22 22 C 1.47167 * 88.00032 * 333.33430 * 13 12 11 23 23 C 1.52551 * 113.43243 * 302.66859 * 11 10 9 24 24 C 1.46887 * 120.46273 * 354.55365 * 8 6 3 25 25 H 1.09004 * 109.47195 * 60.00323 * 1 2 3 26 26 H 1.09004 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47521 * 299.99981 * 1 2 3 28 28 H 1.09001 * 109.47521 * 240.00019 * 2 1 3 29 29 H 1.08999 * 109.46742 * 119.99772 * 2 1 3 30 30 H 1.09005 * 109.46581 * 305.04550 * 5 3 2 31 31 H 1.08998 * 109.47476 * 65.04584 * 5 3 2 32 32 H 1.08998 * 109.46946 * 185.05310 * 5 3 2 33 33 H 1.09002 * 109.59095 * 4.60834 * 9 8 6 34 34 H 1.09003 * 109.71231 * 244.23823 * 9 8 6 35 35 H 1.09004 * 109.52968 * 292.36616 * 10 9 8 36 36 H 1.09001 * 109.58562 * 172.18787 * 10 9 8 37 37 H 1.08997 * 113.48733 * 24.69677 * 12 11 10 38 38 H 1.08997 * 113.49098 * 254.18324 * 12 11 10 39 39 H 0.96998 * 120.00397 * 180.02562 * 17 16 14 40 40 H 1.08998 * 113.48998 * 141.41385 * 22 13 12 41 41 H 1.09001 * 113.48916 * 271.92117 * 22 13 12 42 42 H 1.08997 * 109.52656 * 177.21552 * 23 11 10 43 43 H 1.09003 * 109.52878 * 297.42604 * 23 11 10 44 44 H 1.09002 * 109.58869 * 355.38430 * 24 8 6 45 45 H 1.08998 * 109.59092 * 115.82456 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1943 0.5639 -0.3959 8 7 4.1601 2.4243 0.8123 9 6 5.6102 2.3728 1.0415 10 6 6.2394 3.6658 0.5088 11 6 5.5040 4.8622 1.1051 12 6 5.8552 5.1449 2.5667 13 7 5.8473 6.5783 2.2336 14 6 5.6175 7.7458 2.9114 15 1 5.3713 7.7204 3.9627 16 6 5.7011 8.9618 2.2472 17 7 6.0016 8.9928 0.9662 18 14 5.3884 10.5545 3.1720 19 1 5.0723 10.2494 4.5904 20 1 6.6001 11.4106 3.1073 21 1 4.2435 11.2697 2.5529 22 6 6.1882 6.2062 0.8512 23 6 4.0065 4.8603 0.8141 24 6 3.3932 3.5585 1.3443 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9942 1.5379 -2.1516 31 1 0.5491 2.2055 -1.3551 32 1 2.0741 3.1235 -1.3468 33 1 6.0331 1.5168 0.5156 34 1 5.8107 2.2814 2.1090 35 1 6.1556 3.6912 -0.5777 36 1 7.2906 3.7052 0.7943 37 1 6.8373 4.7719 2.8575 38 1 5.0700 4.8570 3.2657 39 1 6.0604 9.8425 0.5021 40 1 5.6845 6.8152 0.1006 41 1 7.2607 6.1215 0.6760 42 1 3.5383 5.7114 1.3084 43 1 3.8442 4.9278 -0.2617 44 1 2.3560 3.4836 1.0177 45 1 3.4373 3.5508 2.4333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035654965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:04 Heat of formation + Delta-G solvation = 7.022034 kcal Electronic energy + Delta-G solvation = -23127.298618 eV Core-core repulsion = 19953.080480 eV Total energy + Delta-G solvation = -3174.218138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48660 -38.96104 -35.89320 -35.45610 -32.53692 -31.25744 -30.37757 -29.65749 -26.98050 -25.46461 -24.84085 -23.59283 -23.21811 -21.79259 -20.77159 -19.07105 -17.69307 -16.85309 -16.68783 -15.91139 -15.17499 -14.95023 -14.86603 -14.61407 -14.06097 -13.81312 -13.72622 -13.45793 -13.23726 -12.70447 -12.50845 -12.33660 -12.20345 -12.13057 -11.87083 -11.72179 -11.60931 -11.08633 -11.06683 -10.91426 -10.86307 -10.82945 -10.80621 -10.37123 -10.21552 -9.72796 -9.58502 -9.48299 -9.19531 -8.81291 -8.37143 -6.86881 -5.77366 -3.09251 2.71574 3.11950 3.37224 3.42698 3.45256 4.44736 4.45789 4.61815 4.79220 4.94406 5.05765 5.14947 5.19084 5.22557 5.30982 5.37540 5.39742 5.44674 5.51771 5.61659 5.67465 5.69814 5.73417 5.83269 5.83996 5.88838 5.90128 6.03549 6.11822 6.14708 6.20287 6.29848 6.36625 6.51786 6.60433 6.66409 6.81384 6.85302 7.22706 7.36198 7.55257 7.56781 7.97387 8.28394 9.03430 9.70046 10.65365 11.40071 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028436 B = 0.003984 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.420709 B = 7027.141536 C = 7497.873306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.113 4.113 4 H 0.092 0.908 5 C -0.142 4.142 6 C 0.518 3.482 7 O -0.551 6.551 8 N -0.605 5.605 9 C 0.114 3.886 10 C -0.113 4.113 11 C -0.115 4.115 12 C 0.127 3.873 13 N -0.608 5.608 14 C -0.216 4.216 15 H 0.080 0.920 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.166 3.834 23 C -0.094 4.094 24 C 0.105 3.895 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.252 0.748 40 H 0.069 0.931 41 H 0.023 0.977 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 -15.010 -1.919 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.134 4.134 4 H 0.110 0.890 5 C -0.199 4.199 6 C 0.307 3.693 7 O -0.430 6.430 8 N -0.338 5.338 9 C -0.008 4.008 10 C -0.152 4.152 11 C -0.116 4.116 12 C 0.001 3.999 13 N -0.334 5.334 14 C -0.343 4.343 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.741 3.259 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.041 3.959 23 C -0.132 4.132 24 C -0.017 4.017 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.101 0.899 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.590 -15.085 -2.119 17.488 hybrid contribution 0.133 1.149 0.588 1.298 sum -8.457 -13.935 -1.530 16.373 Atomic orbital electron populations 1.21827 0.95409 1.01751 1.02004 1.21374 0.95567 0.94353 1.03108 1.21399 0.92234 0.98984 1.00819 0.88988 1.21766 1.01857 1.00664 0.95656 1.20658 0.90194 0.81039 0.77447 1.90644 1.67378 1.37735 1.47202 1.48160 1.08719 1.22634 1.54257 1.21597 0.79497 0.99084 1.00652 1.21718 0.99363 0.93597 1.00532 1.22076 0.95223 0.96075 0.98251 1.22395 0.97266 0.86664 0.93579 1.45582 1.80782 0.99744 1.07274 1.18967 1.40218 0.82112 0.93025 0.90219 1.24775 1.02190 0.97373 0.96127 1.69839 1.54285 1.24512 1.07986 0.86074 0.77434 0.83695 0.78735 1.20489 1.21802 1.21720 1.22037 0.95618 0.88605 0.89680 1.21409 0.94559 0.96345 1.00854 1.21918 0.95144 0.85769 0.98883 0.92321 0.92597 0.92684 0.90900 0.91931 0.91896 0.91333 0.91952 0.89581 0.91613 0.91883 0.90863 0.95238 0.94583 0.93755 0.91224 0.95887 0.89323 0.92112 0.89921 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.67 37.16 0.36 -0.79 16 2 C -0.11 -1.04 4.97 -26.73 -0.13 -1.17 16 3 C -0.11 -1.19 1.92 -91.77 -0.18 -1.37 16 4 H 0.09 0.85 6.15 -51.93 -0.32 0.53 16 5 C -0.14 -1.37 8.72 37.16 0.32 -1.05 16 6 C 0.52 7.25 6.68 -10.98 -0.07 7.18 16 7 O -0.55 -9.49 15.76 5.56 0.09 -9.40 16 8 N -0.61 -8.27 2.94 -172.63 -0.51 -8.78 16 9 C 0.11 1.59 6.35 -3.65 -0.02 1.57 16 10 C -0.11 -1.71 5.30 -26.78 -0.14 -1.86 16 11 C -0.11 -2.03 0.84 -155.01 -0.13 -2.16 16 12 C 0.13 2.51 7.63 -8.20 -0.06 2.45 16 13 N -0.61 -15.16 3.55 -184.65 -0.66 -15.81 16 14 C -0.22 -5.93 10.74 -15.06 -0.16 -6.10 16 15 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 16 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 17 N -0.92 -26.96 11.52 55.49 0.64 -26.32 16 18 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 C 0.17 3.82 6.54 -8.21 -0.05 3.76 16 23 C -0.09 -1.49 5.27 -26.78 -0.14 -1.64 16 24 C 0.11 1.34 6.08 -3.65 -0.02 1.32 16 25 H 0.06 0.41 6.68 -51.93 -0.35 0.06 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.53 6.82 -51.93 -0.35 0.18 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.25 6.97 -51.93 -0.36 0.89 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.04 0.67 7.53 -51.93 -0.39 0.28 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 41 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.09 1.63 7.95 -51.93 -0.41 1.21 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 0.87 5.47 -51.93 -0.28 0.58 16 45 H 0.07 0.88 7.60 -51.93 -0.39 0.48 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -31.54 346.68 -8.60 -40.15 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.84 Total: -1.72 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -0.53 Total: -0.17 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: -0.52 Total: -50.91 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.54 -8.60 -40.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035654965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.167 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds