Wall clock time and date at job start Tue Mar 31 2020 03:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 H 1.09001 * 109.47166 * 54.99583 * 3 2 1 5 5 C 1.53001 * 109.47105 * 295.00059 * 3 2 1 6 6 C 1.50702 * 109.46991 * 174.99969 * 3 2 1 7 7 O 1.21276 * 120.00216 * 34.63726 * 6 3 2 8 8 N 1.34780 * 119.99749 * 214.64092 * 6 3 2 9 9 C 1.46893 * 120.46201 * 174.53374 * 8 6 3 10 10 C 1.53349 * 108.74144 * 124.38767 * 9 8 6 11 11 C 1.52561 * 109.12816 * 52.25808 * 10 9 8 12 12 C 1.52962 * 114.05905 * 75.53953 * 11 10 9 13 13 N 1.47166 * 87.85059 * 139.44183 * 12 11 10 14 14 C 1.36934 * 135.99794 * 153.08203 * 13 12 11 15 15 H 1.08002 * 120.00140 * 359.97438 * 14 13 12 16 16 C 1.38816 * 119.99833 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00133 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99823 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47371 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47391 * 120.00348 * 18 16 14 21 21 H 1.48508 * 109.46749 * 239.99604 * 18 16 14 22 22 C 1.47167 * 88.00032 * 333.33430 * 13 12 11 23 23 C 1.52551 * 113.43243 * 302.66859 * 11 10 9 24 24 C 1.46887 * 120.46273 * 354.55365 * 8 6 3 25 25 H 1.09004 * 109.47195 * 60.00323 * 1 2 3 26 26 H 1.09004 * 109.47267 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47521 * 299.99981 * 1 2 3 28 28 H 1.09001 * 109.47521 * 240.00019 * 2 1 3 29 29 H 1.08999 * 109.46742 * 119.99772 * 2 1 3 30 30 H 1.09005 * 109.46581 * 305.04550 * 5 3 2 31 31 H 1.08998 * 109.47476 * 65.04584 * 5 3 2 32 32 H 1.08998 * 109.46946 * 185.05310 * 5 3 2 33 33 H 1.09002 * 109.59095 * 4.60834 * 9 8 6 34 34 H 1.09003 * 109.71231 * 244.23823 * 9 8 6 35 35 H 1.09004 * 109.52968 * 292.36616 * 10 9 8 36 36 H 1.09001 * 109.58562 * 172.18787 * 10 9 8 37 37 H 1.08997 * 113.48733 * 24.69677 * 12 11 10 38 38 H 1.08997 * 113.49098 * 254.18324 * 12 11 10 39 39 H 0.96998 * 120.00397 * 180.02562 * 17 16 14 40 40 H 1.08998 * 113.48998 * 141.41385 * 22 13 12 41 41 H 1.09001 * 113.48916 * 271.92117 * 22 13 12 42 42 H 1.08997 * 109.52656 * 177.21552 * 23 11 10 43 43 H 1.09003 * 109.52878 * 297.42604 * 23 11 10 44 44 H 1.09002 * 109.58869 * 355.38430 * 24 8 6 45 45 H 1.08998 * 109.59092 * 115.82456 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1943 0.5639 -0.3959 8 7 4.1601 2.4243 0.8123 9 6 5.6102 2.3728 1.0415 10 6 6.2394 3.6658 0.5088 11 6 5.5040 4.8622 1.1051 12 6 5.8552 5.1449 2.5667 13 7 5.8473 6.5783 2.2336 14 6 5.6175 7.7458 2.9114 15 1 5.3713 7.7204 3.9627 16 6 5.7011 8.9618 2.2472 17 7 6.0016 8.9928 0.9662 18 14 5.3884 10.5545 3.1720 19 1 5.0723 10.2494 4.5904 20 1 6.6001 11.4106 3.1073 21 1 4.2435 11.2697 2.5529 22 6 6.1882 6.2062 0.8512 23 6 4.0065 4.8603 0.8141 24 6 3.3932 3.5585 1.3443 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.9942 1.5379 -2.1516 31 1 0.5491 2.2055 -1.3551 32 1 2.0741 3.1235 -1.3468 33 1 6.0331 1.5168 0.5156 34 1 5.8107 2.2814 2.1090 35 1 6.1556 3.6912 -0.5777 36 1 7.2906 3.7052 0.7943 37 1 6.8373 4.7719 2.8575 38 1 5.0700 4.8570 3.2657 39 1 6.0604 9.8425 0.5021 40 1 5.6845 6.8152 0.1006 41 1 7.2607 6.1215 0.6760 42 1 3.5383 5.7114 1.3084 43 1 3.8442 4.9278 -0.2617 44 1 2.3560 3.4836 1.0177 45 1 3.4373 3.5508 2.4333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035654965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:03 Heat of formation + Delta-G solvation = -11.201504 kcal Electronic energy + Delta-G solvation = -23128.088850 eV Core-core repulsion = 19953.080480 eV Total energy + Delta-G solvation = -3175.008370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72554 -40.37256 -37.16587 -36.39191 -34.42631 -32.51889 -31.83898 -30.48213 -28.73851 -26.65695 -26.28118 -24.95413 -24.41285 -23.21627 -21.97238 -20.21788 -18.87875 -18.66474 -18.06143 -16.97846 -16.86287 -16.22517 -16.12309 -15.79066 -15.60634 -15.12655 -15.04274 -14.50440 -14.36076 -14.07732 -13.81794 -13.56212 -13.43143 -13.10288 -13.00901 -12.88531 -12.82989 -12.65444 -12.52321 -12.49688 -12.13352 -12.09492 -11.81192 -11.65194 -11.60236 -11.45108 -11.13578 -10.90868 -10.80967 -10.56391 -9.57088 -8.88374 -7.88466 -5.21150 1.46399 1.47145 1.57343 1.63791 2.06041 2.48494 3.33240 3.45513 3.50606 3.61680 3.85052 3.86017 4.04274 4.10541 4.16977 4.33405 4.35369 4.41763 4.54121 4.62858 4.66167 4.69528 4.75078 4.75792 4.82264 4.86709 4.90498 4.98939 5.02492 5.08876 5.14641 5.16392 5.20505 5.24096 5.28623 5.34141 5.40515 5.50688 5.55774 5.59259 5.75688 5.95278 6.46793 6.92957 7.19892 7.62753 8.64904 9.29255 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028436 B = 0.003984 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.420709 B = 7027.141536 C = 7497.873306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.104 4.104 3 C -0.109 4.109 4 H 0.113 0.887 5 C -0.140 4.140 6 C 0.514 3.486 7 O -0.588 6.588 8 N -0.606 5.606 9 C 0.118 3.882 10 C -0.105 4.105 11 C -0.087 4.087 12 C 0.130 3.870 13 N -0.636 5.636 14 C -0.223 4.223 15 H 0.086 0.914 16 C -0.068 4.068 17 N -0.954 5.954 18 Si 0.977 3.023 19 H -0.264 1.264 20 H -0.297 1.297 21 H -0.291 1.291 22 C 0.161 3.839 23 C -0.090 4.090 24 C 0.115 3.885 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.246 0.754 40 H 0.034 0.966 41 H 0.008 0.992 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.112 0.888 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 -16.110 -0.673 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.130 4.130 4 H 0.131 0.869 5 C -0.197 4.197 6 C 0.304 3.696 7 O -0.468 6.468 8 N -0.338 5.338 9 C -0.005 4.005 10 C -0.144 4.144 11 C -0.088 4.088 12 C 0.005 3.995 13 N -0.362 5.362 14 C -0.351 4.351 15 H 0.103 0.897 16 C -0.261 4.261 17 N -0.603 5.603 18 Si 0.805 3.195 19 H -0.188 1.188 20 H -0.224 1.224 21 H -0.218 1.218 22 C 0.035 3.965 23 C -0.128 4.128 24 C -0.007 4.007 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.026 0.974 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.130 0.870 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.395 -16.213 -0.844 19.278 hybrid contribution 0.743 1.454 0.185 1.643 sum -9.652 -14.759 -0.658 17.647 Atomic orbital electron populations 1.21800 0.93345 1.02510 1.02855 1.21352 0.97266 0.93574 1.02014 1.21478 0.89578 0.99917 1.02039 0.86862 1.21776 1.03412 0.99844 0.94701 1.21320 0.91614 0.80273 0.76374 1.90630 1.68487 1.39131 1.48569 1.48246 1.08633 1.22825 1.54110 1.21537 0.79849 0.97723 1.01350 1.21639 0.99544 0.93101 1.00110 1.21865 0.96203 0.94091 0.96669 1.22533 0.98199 0.83669 0.95076 1.45910 1.80777 1.01212 1.08279 1.19365 1.38947 0.83361 0.93450 0.89675 1.25597 1.02919 1.00594 0.96958 1.70036 1.56083 1.24661 1.09525 0.85033 0.76676 0.79497 0.78278 1.18770 1.22415 1.21835 1.22019 0.94878 0.91306 0.88342 1.21337 0.93167 0.97540 1.00758 1.21909 0.96127 0.83337 0.99319 0.91587 0.92010 0.91636 0.92558 0.92588 0.93032 0.88838 0.92563 0.89987 0.90137 0.92335 0.90302 0.94312 0.92844 0.94478 0.94761 0.97415 0.91698 0.92213 0.87002 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.67 71.98 0.70 -1.08 16 2 C -0.10 -1.82 4.97 30.60 0.15 -1.67 16 3 C -0.11 -2.01 1.92 -11.54 -0.02 -2.03 16 4 H 0.11 1.61 6.15 -2.39 -0.01 1.60 16 5 C -0.14 -2.36 8.72 71.98 0.63 -1.73 16 6 C 0.51 13.43 6.68 87.66 0.59 14.01 16 7 O -0.59 -19.72 15.76 -3.02 -0.05 -19.76 16 8 N -0.61 -15.16 2.94 -818.46 -2.41 -17.57 16 9 C 0.12 3.06 6.35 86.42 0.55 3.61 16 10 C -0.10 -3.07 5.30 30.57 0.16 -2.90 16 11 C -0.09 -3.02 0.84 -52.51 -0.04 -3.07 16 12 C 0.13 4.96 7.63 83.33 0.64 5.59 16 13 N -0.64 -31.89 3.55 -738.10 -2.62 -34.51 16 14 C -0.22 -12.30 10.74 84.03 0.90 -11.40 16 15 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 16 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 17 N -0.95 -57.67 11.52 21.65 0.25 -57.42 16 18 Si 0.98 45.35 29.55 68.60 2.03 47.37 16 19 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 C 0.16 7.57 6.54 83.32 0.55 8.12 16 23 C -0.09 -2.77 5.27 30.56 0.16 -2.60 16 24 C 0.12 2.60 6.08 86.42 0.53 3.12 16 25 H 0.07 0.70 6.68 -2.38 -0.02 0.69 16 26 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 1.17 8.02 -2.39 -0.02 1.15 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.09 1.12 6.82 -2.39 -0.02 1.10 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 2.26 6.97 -2.39 -0.02 2.24 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 37 H 0.04 1.44 8.06 -2.39 -0.02 1.42 16 38 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 39 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.03 1.84 7.12 -2.39 -0.02 1.82 16 41 H 0.01 0.40 8.09 -2.39 -0.02 0.38 16 42 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.11 1.91 5.47 -2.39 -0.01 1.90 16 45 H 0.08 1.72 7.60 -2.39 -0.02 1.70 16 Total: -1.00 -69.73 346.68 4.09 -65.64 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.95 Total: 11.65 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.94 Total: 4.59 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -4.78 Total: -109.49 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.05 Total: -19.76 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.73 4.09 -65.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035654965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.437 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds