Wall clock time and date at job start Tue Mar 31 2020 02:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.49946 * 55.06616 * 3 2 1 5 5 C 1.53190 * 109.50141 * 294.99778 * 3 2 1 6 6 N 1.46921 * 108.77705 * 185.41615 * 5 3 2 7 7 C 1.34778 * 120.63086 * 233.58822 * 6 5 3 8 8 O 1.21274 * 120.00079 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99911 * 179.97438 * 7 6 5 10 10 C 1.53777 * 113.61586 * 279.13385 * 9 7 6 11 11 C 1.53949 * 87.02115 * 220.04839 * 10 9 7 12 12 C 1.53781 * 113.61203 * 181.52647 * 9 7 6 13 13 C 1.46932 * 118.74165 * 53.60954 * 6 5 3 14 14 C 1.53192 * 108.77058 * 306.39262 * 13 6 5 15 15 C 1.53040 * 109.31655 * 54.63368 * 14 13 6 16 16 H 1.08993 * 109.45962 * 178.60767 * 15 14 13 17 17 N 1.46500 * 109.45745 * 58.65301 * 15 14 13 18 18 C 1.36933 * 120.00251 * 84.93848 * 17 15 14 19 19 H 1.07996 * 119.99968 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00202 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00030 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00049 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 89.99685 * 22 20 18 24 24 H 1.48498 * 109.47065 * 210.00501 * 22 20 18 25 25 H 1.48505 * 109.46941 * 330.00033 * 22 20 18 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 31 H 1.09001 * 109.58660 * 305.20436 * 5 3 2 32 32 H 1.08999 * 109.58766 * 65.63075 * 5 3 2 33 33 H 1.09002 * 112.84629 * 50.33532 * 9 7 6 34 34 H 1.09000 * 113.61675 * 334.57780 * 10 9 7 35 35 H 1.09003 * 113.60938 * 105.46997 * 10 9 7 36 36 H 1.08995 * 113.53877 * 270.81431 * 11 10 9 37 37 H 1.08998 * 113.73883 * 139.94487 * 11 10 9 38 38 H 1.08994 * 113.61859 * 254.53314 * 12 9 7 39 39 H 1.09004 * 113.61435 * 25.43647 * 12 9 7 40 40 H 1.09000 * 109.58632 * 66.17448 * 13 6 5 41 41 H 1.08994 * 109.58949 * 186.60789 * 13 6 5 42 42 H 1.09007 * 109.49322 * 174.58281 * 14 13 6 43 43 H 1.08996 * 109.50210 * 294.67833 * 14 13 6 44 44 H 0.97004 * 119.99979 * 264.92902 * 17 15 14 45 45 H 0.97006 * 119.99825 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9817 0.8424 5 6 1.6350 2.1280 -1.3087 6 7 2.2414 3.4657 -1.3493 7 6 1.4815 4.5579 -1.5636 8 8 0.2852 4.4421 -1.7258 9 6 2.1183 5.9233 -1.6018 10 6 2.3804 6.5200 -0.2090 11 6 1.9253 7.8709 -0.7904 12 6 1.1126 7.0662 -1.8185 13 6 3.6921 3.5900 -1.1521 14 6 4.0740 2.8881 0.1549 15 6 3.5655 1.4450 0.1218 16 1 3.8574 0.9360 1.0403 17 7 4.1480 0.7486 -1.0280 18 6 5.3861 0.1728 -0.9245 19 1 5.9333 0.2323 0.0047 20 6 5.9378 -0.4875 -2.0138 21 7 7.1279 -1.0405 -1.9144 22 14 4.9910 -0.5912 -3.6208 23 1 5.3312 0.5771 -4.4719 24 1 5.3557 -1.8437 -4.3302 25 1 3.5332 -0.5894 -3.3374 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.9908 1.5398 -2.1546 32 1 0.5496 2.2174 -1.3538 33 1 2.9814 5.9693 -2.2661 34 1 1.7174 6.1317 0.5642 35 1 3.4302 6.5010 0.0836 36 1 2.7362 8.4502 -1.2318 37 1 1.3089 8.4568 -0.1086 38 1 1.1402 7.4876 -2.8233 39 1 0.1022 6.8277 -1.4862 40 1 4.2156 3.1209 -1.9852 41 1 3.9640 4.6439 -1.0938 42 1 5.1584 2.8893 0.2650 43 1 3.6218 3.4139 0.9958 44 1 3.6566 0.6953 -1.8627 45 1 7.5133 -1.5023 -2.6755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037761454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:55 Heat of formation + Delta-G solvation = -13.303073 kcal Electronic energy + Delta-G solvation = -23602.682681 eV Core-core repulsion = 20427.583180 eV Total energy + Delta-G solvation = -3175.099501 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.55800 -38.67442 -37.03743 -34.51645 -33.85784 -31.76568 -29.85056 -29.12165 -27.00619 -25.75794 -24.64272 -23.86455 -23.12952 -20.88490 -20.46728 -19.20986 -18.17540 -17.92330 -17.17720 -16.02047 -15.57235 -15.09557 -14.65892 -14.49924 -14.28669 -13.82421 -13.55539 -13.33060 -13.15550 -12.85627 -12.60502 -12.49549 -12.45329 -12.13298 -11.85876 -11.59601 -11.30351 -11.25135 -11.10189 -10.94219 -10.81070 -10.64882 -10.53359 -10.37041 -10.32738 -10.22612 -9.83082 -9.57702 -9.45814 -8.96664 -8.32508 -7.30263 -5.81240 -3.16271 2.75879 3.20889 3.32215 3.35319 3.41905 4.39527 4.48027 4.54306 4.55612 4.68162 4.88840 5.06505 5.13628 5.22735 5.33501 5.41326 5.43348 5.51018 5.54373 5.56935 5.64001 5.65328 5.67582 5.72472 5.78202 5.81431 5.91148 5.96870 6.03154 6.08165 6.19554 6.27031 6.27881 6.32298 6.44912 6.53053 6.57627 6.67099 6.76153 6.91209 7.65274 7.95360 8.35266 8.38032 9.16363 9.89106 10.09108 11.37216 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.005740 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.740800 B = 4877.264662 C = 5501.845927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.116 3.884 6 N -0.603 5.603 7 C 0.522 3.478 8 O -0.554 6.554 9 C -0.138 4.138 10 C -0.122 4.122 11 C -0.142 4.142 12 C -0.118 4.118 13 C 0.113 3.887 14 C -0.148 4.148 15 C 0.184 3.816 16 H 0.060 0.940 17 N -0.743 5.743 18 C -0.240 4.240 19 H 0.091 0.909 20 C 0.007 3.993 21 N -0.933 5.933 22 Si 0.877 3.123 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.613 13.597 3.521 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.126 4.126 4 H 0.089 0.911 5 C -0.006 4.006 6 N -0.335 5.335 7 C 0.310 3.690 8 O -0.433 6.433 9 C -0.159 4.159 10 C -0.159 4.159 11 C -0.179 4.179 12 C -0.155 4.155 13 C -0.010 4.010 14 C -0.189 4.189 15 C 0.075 3.925 16 H 0.077 0.923 17 N -0.387 5.387 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.188 4.188 21 N -0.581 5.581 22 Si 0.707 3.293 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.071 0.929 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.003 13.420 3.506 17.705 hybrid contribution -0.296 -0.290 -1.313 1.377 sum -11.299 13.130 2.193 17.461 Atomic orbital electron populations 1.21856 0.96645 1.01147 1.01455 1.21439 0.94479 0.95758 1.03291 1.21790 0.97404 0.96155 0.97222 0.91081 1.21665 0.99060 0.82007 0.97894 1.48177 1.08753 1.06437 1.70088 1.20486 0.86753 0.85888 0.75855 1.90632 1.15108 1.86627 1.50923 1.22772 1.00797 0.91946 1.00392 1.22851 1.02196 0.95937 0.94951 1.22860 1.00079 0.96194 0.98787 1.22790 0.98771 0.94289 0.99689 1.21746 0.79000 1.00470 0.99767 1.22485 1.02210 0.98703 0.95538 1.20189 0.89435 0.90763 0.92156 0.92252 1.42843 1.19568 1.65842 1.10470 1.19054 0.91831 1.26880 0.99221 0.89165 1.24622 0.96428 1.00291 0.97490 1.69687 1.16304 1.41298 1.30813 0.86681 0.79666 0.77463 0.85451 1.21188 1.21720 1.20406 0.93054 0.93142 0.92884 0.91548 0.91116 0.91776 0.89377 0.87068 0.89775 0.90548 0.89973 0.91137 0.91242 0.88881 0.90441 0.90695 0.90259 0.92926 0.80604 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16 2 C -0.11 -1.70 5.19 -26.73 -0.14 -1.83 16 3 C -0.11 -1.63 2.14 -90.50 -0.19 -1.83 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 1.87 5.03 -3.71 -0.02 1.86 16 6 N -0.60 -9.26 2.97 -172.77 -0.51 -9.77 16 7 C 0.52 7.96 7.22 -10.98 -0.08 7.89 16 8 O -0.55 -10.10 15.32 5.56 0.09 -10.02 16 9 C -0.14 -1.60 2.72 -90.96 -0.25 -1.84 16 10 C -0.12 -1.18 7.16 -25.83 -0.18 -1.37 16 11 C -0.14 -1.20 8.09 -25.83 -0.21 -1.41 16 12 C -0.12 -1.24 7.40 -25.92 -0.19 -1.43 16 13 C 0.11 1.66 6.05 -3.71 -0.02 1.64 16 14 C -0.15 -2.29 5.78 -26.61 -0.15 -2.45 16 15 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 16 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 17 N -0.74 -16.04 3.52 -53.39 -0.19 -16.23 16 18 C -0.24 -6.31 10.41 -15.06 -0.16 -6.46 16 19 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 20 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -28.40 13.97 55.49 0.78 -27.63 16 22 Si 0.88 21.54 27.73 -169.99 -4.71 16.82 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.69 6.70 -51.93 -0.35 0.35 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.23 7.69 -51.93 -0.40 0.83 16 31 H 0.06 1.13 6.64 -51.93 -0.34 0.78 16 32 H 0.09 1.44 5.72 -51.93 -0.30 1.15 16 33 H 0.11 1.17 7.55 -51.93 -0.39 0.77 16 34 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.12 7.45 -51.93 -0.39 0.73 16 40 H 0.08 1.32 7.74 -51.93 -0.40 0.92 16 41 H 0.07 0.91 5.36 -51.93 -0.28 0.63 16 42 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.36 7.88 3.80 -40.82 -0.16 7.72 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -30.43 341.50 -8.56 -38.99 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -7.65 Total: 8.37 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.50 Total: -5.68 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.07 Total: -53.63 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.82 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.43 -8.56 -38.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037761454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.688 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds