Wall clock time and date at job start Tue Mar 31 2020 02:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.49946 * 55.06616 * 3 2 1 5 5 C 1.53190 * 109.50141 * 294.99778 * 3 2 1 6 6 N 1.46921 * 108.77705 * 185.41615 * 5 3 2 7 7 C 1.34778 * 120.63086 * 233.58822 * 6 5 3 8 8 O 1.21274 * 120.00079 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99911 * 179.97438 * 7 6 5 10 10 C 1.53777 * 113.61586 * 279.13385 * 9 7 6 11 11 C 1.53949 * 87.02115 * 220.04839 * 10 9 7 12 12 C 1.53781 * 113.61203 * 181.52647 * 9 7 6 13 13 C 1.46932 * 118.74165 * 53.60954 * 6 5 3 14 14 C 1.53192 * 108.77058 * 306.39262 * 13 6 5 15 15 C 1.53040 * 109.31655 * 54.63368 * 14 13 6 16 16 H 1.08993 * 109.45962 * 178.60767 * 15 14 13 17 17 N 1.46500 * 109.45745 * 58.65301 * 15 14 13 18 18 C 1.36933 * 120.00251 * 84.93848 * 17 15 14 19 19 H 1.07996 * 119.99968 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00202 * 179.97438 * 18 17 15 21 21 N 1.31614 * 120.00030 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00049 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 89.99685 * 22 20 18 24 24 H 1.48498 * 109.47065 * 210.00501 * 22 20 18 25 25 H 1.48505 * 109.46941 * 330.00033 * 22 20 18 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 31 H 1.09001 * 109.58660 * 305.20436 * 5 3 2 32 32 H 1.08999 * 109.58766 * 65.63075 * 5 3 2 33 33 H 1.09002 * 112.84629 * 50.33532 * 9 7 6 34 34 H 1.09000 * 113.61675 * 334.57780 * 10 9 7 35 35 H 1.09003 * 113.60938 * 105.46997 * 10 9 7 36 36 H 1.08995 * 113.53877 * 270.81431 * 11 10 9 37 37 H 1.08998 * 113.73883 * 139.94487 * 11 10 9 38 38 H 1.08994 * 113.61859 * 254.53314 * 12 9 7 39 39 H 1.09004 * 113.61435 * 25.43647 * 12 9 7 40 40 H 1.09000 * 109.58632 * 66.17448 * 13 6 5 41 41 H 1.08994 * 109.58949 * 186.60789 * 13 6 5 42 42 H 1.09007 * 109.49322 * 174.58281 * 14 13 6 43 43 H 1.08996 * 109.50210 * 294.67833 * 14 13 6 44 44 H 0.97004 * 119.99979 * 264.92902 * 17 15 14 45 45 H 0.97006 * 119.99825 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6064 1.9817 0.8424 5 6 1.6350 2.1280 -1.3087 6 7 2.2414 3.4657 -1.3493 7 6 1.4815 4.5579 -1.5636 8 8 0.2852 4.4421 -1.7258 9 6 2.1183 5.9233 -1.6018 10 6 2.3804 6.5200 -0.2090 11 6 1.9253 7.8709 -0.7904 12 6 1.1126 7.0662 -1.8185 13 6 3.6921 3.5900 -1.1521 14 6 4.0740 2.8881 0.1549 15 6 3.5655 1.4450 0.1218 16 1 3.8574 0.9360 1.0403 17 7 4.1480 0.7486 -1.0280 18 6 5.3861 0.1728 -0.9245 19 1 5.9333 0.2323 0.0047 20 6 5.9378 -0.4875 -2.0138 21 7 7.1279 -1.0405 -1.9144 22 14 4.9910 -0.5912 -3.6208 23 1 5.3312 0.5771 -4.4719 24 1 5.3557 -1.8437 -4.3302 25 1 3.5332 -0.5894 -3.3374 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.9908 1.5398 -2.1546 32 1 0.5496 2.2174 -1.3538 33 1 2.9814 5.9693 -2.2661 34 1 1.7174 6.1317 0.5642 35 1 3.4302 6.5010 0.0836 36 1 2.7362 8.4502 -1.2318 37 1 1.3089 8.4568 -0.1086 38 1 1.1402 7.4876 -2.8233 39 1 0.1022 6.8277 -1.4862 40 1 4.2156 3.1209 -1.9852 41 1 3.9640 4.6439 -1.0938 42 1 5.1584 2.8893 0.2650 43 1 3.6218 3.4139 0.9958 44 1 3.6566 0.6953 -1.8627 45 1 7.5133 -1.5023 -2.6755 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037761454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:54 Heat of formation + Delta-G solvation = -30.649608 kcal Electronic energy + Delta-G solvation = -23603.434883 eV Core-core repulsion = 20427.583180 eV Total energy + Delta-G solvation = -3175.851703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.71044 -39.85536 -38.13252 -35.95354 -35.38745 -33.56418 -31.46230 -30.39112 -28.08015 -26.52932 -25.95878 -25.06668 -24.94168 -22.18195 -21.46442 -20.33911 -19.87174 -19.39155 -18.36717 -17.21153 -16.73047 -16.50046 -15.99592 -15.94033 -15.68590 -15.15807 -14.96347 -14.71859 -14.40214 -14.27143 -13.93058 -13.64717 -13.46281 -13.27673 -13.04677 -12.98746 -12.80577 -12.68182 -12.47711 -12.23649 -12.02800 -11.99350 -11.87612 -11.63218 -11.54598 -11.40527 -11.27597 -11.17829 -10.91458 -10.60183 -9.63921 -9.23414 -7.98777 -5.29098 1.35539 1.35934 1.43213 1.59448 2.02426 2.48097 3.33555 3.48253 3.60246 3.61063 3.70338 3.79867 3.93566 3.94199 3.99859 4.11419 4.27529 4.30524 4.38558 4.41762 4.55768 4.64535 4.69767 4.79305 4.81625 4.85249 4.89637 4.94564 5.02153 5.05683 5.11121 5.14224 5.18152 5.20451 5.22480 5.28572 5.35711 5.46089 5.53868 5.65280 5.84169 6.25510 6.45768 7.12117 7.15962 7.89214 8.07331 9.23175 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017598 B = 0.005740 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.740800 B = 4877.264662 C = 5501.845927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.093 4.093 4 H 0.088 0.912 5 C 0.118 3.882 6 N -0.604 5.604 7 C 0.518 3.482 8 O -0.588 6.588 9 C -0.142 4.142 10 C -0.118 4.118 11 C -0.127 4.127 12 C -0.122 4.122 13 C 0.117 3.883 14 C -0.141 4.141 15 C 0.176 3.824 16 H 0.050 0.950 17 N -0.742 5.742 18 C -0.210 4.210 19 H 0.063 0.937 20 C -0.057 4.057 21 N -0.983 5.983 22 Si 0.936 3.064 23 H -0.282 1.282 24 H -0.300 1.300 25 H -0.260 1.260 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.361 0.639 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.885 15.821 3.900 20.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.113 4.113 4 H 0.107 0.893 5 C -0.005 4.005 6 N -0.335 5.335 7 C 0.308 3.692 8 O -0.469 6.469 9 C -0.163 4.163 10 C -0.156 4.156 11 C -0.165 4.165 12 C -0.160 4.160 13 C -0.005 4.005 14 C -0.181 4.181 15 C 0.068 3.932 16 H 0.068 0.932 17 N -0.386 5.386 18 C -0.342 4.342 19 H 0.081 0.919 20 C -0.248 4.248 21 N -0.635 5.635 22 Si 0.765 3.235 23 H -0.208 1.208 24 H -0.228 1.228 25 H -0.185 1.185 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.195 0.805 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.318 15.686 3.913 20.325 hybrid contribution 0.055 -0.956 -1.328 1.637 sum -12.263 14.730 2.585 19.340 Atomic orbital electron populations 1.21791 0.94652 1.02032 1.01933 1.21410 0.96236 0.95232 1.02002 1.21685 0.95484 0.96564 0.97576 0.89343 1.21558 0.98980 0.82543 0.97414 1.48242 1.08947 1.06243 1.70054 1.21190 0.86391 0.86958 0.74623 1.90616 1.16710 1.87218 1.52324 1.22957 1.01439 0.89636 1.02286 1.22870 1.03034 0.96232 0.93473 1.22833 1.00104 0.95659 0.97859 1.22795 0.97818 0.94502 1.00884 1.21723 0.78379 1.02157 0.98219 1.22351 1.01493 0.97140 0.97126 1.20434 0.90955 0.91664 0.90137 0.93212 1.42812 1.18069 1.65925 1.11790 1.19009 0.92729 1.24808 0.97616 0.91858 1.25246 0.97414 1.01322 1.00843 1.69846 1.18416 1.43588 1.31641 0.85704 0.79392 0.76851 0.81569 1.20819 1.22754 1.18476 0.92052 0.91840 0.93157 0.91663 0.93547 0.93494 0.89523 0.85500 0.90683 0.88918 0.88121 0.90240 0.90475 0.90881 0.92850 0.87382 0.91502 0.90196 0.80523 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.67 71.98 0.70 -2.83 16 2 C -0.11 -3.24 5.19 30.60 0.16 -3.08 16 3 C -0.09 -2.73 2.14 -10.72 -0.02 -2.76 16 4 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 5 C 0.12 3.66 5.03 86.36 0.43 4.09 16 6 N -0.60 -17.41 2.97 -818.91 -2.43 -19.84 16 7 C 0.52 14.84 7.22 87.66 0.63 15.47 16 8 O -0.59 -20.82 15.32 -3.01 -0.05 -20.86 16 9 C -0.14 -2.88 2.72 -11.01 -0.03 -2.91 16 10 C -0.12 -1.88 7.16 31.18 0.22 -1.66 16 11 C -0.13 -1.69 8.09 31.18 0.25 -1.44 16 12 C -0.12 -2.28 7.40 31.12 0.23 -2.05 16 13 C 0.12 3.20 6.05 86.36 0.52 3.72 16 14 C -0.14 -4.06 5.78 30.67 0.18 -3.88 16 15 C 0.18 6.02 2.53 45.02 0.11 6.14 16 16 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 17 N -0.74 -31.78 3.52 -322.82 -1.14 -32.92 16 18 C -0.21 -11.20 10.41 84.03 0.87 -10.32 16 19 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 20 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 21 N -0.98 -61.49 13.97 21.65 0.30 -61.19 16 22 Si 0.94 45.01 27.73 68.60 1.90 46.91 16 23 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 25 H -0.26 -11.52 6.52 99.48 0.65 -10.87 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.05 1.24 6.70 -2.39 -0.02 1.22 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.58 7.69 -2.39 -0.02 1.56 16 31 H 0.05 1.61 6.64 -2.39 -0.02 1.60 16 32 H 0.09 2.74 5.72 -2.39 -0.01 2.73 16 33 H 0.13 2.20 7.55 -2.39 -0.02 2.18 16 34 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 35 H 0.09 1.20 7.88 -2.39 -0.02 1.18 16 36 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.67 7.45 -2.38 -0.02 1.65 16 40 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 41 H 0.11 2.23 5.36 -2.39 -0.01 2.22 16 42 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.36 15.55 3.80 -92.71 -0.35 15.19 16 45 H 0.25 15.37 8.31 -92.70 -0.77 14.60 16 Total: -1.00 -66.94 341.50 3.87 -63.07 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.55 Total: 29.11 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 4.73 Total: -4.28 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -3.27 Total: -113.95 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.86 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.91 kcal Total: -66.94 3.87 -63.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037761454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.417 kcal (2) G-P(sol) polarization free energy of solvation -66.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds