Wall clock time and date at job start Tue Mar 31 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46745 * 2 1 4 4 H 1.08996 * 109.49755 * 304.93278 * 3 2 1 5 5 C 1.53196 * 109.49721 * 64.99661 * 3 2 1 6 6 N 1.46929 * 108.77486 * 174.61346 * 5 3 2 7 7 C 1.34779 * 120.62811 * 126.39016 * 6 5 3 8 8 O 1.21284 * 119.99950 * 0.02562 * 7 6 5 9 9 C 1.50692 * 120.00005 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47303 * 180.02562 * 9 7 6 11 11 C 1.53000 * 117.49826 * 243.74787 * 10 9 7 12 12 C 1.53003 * 117.50212 * 175.08923 * 10 9 7 13 13 C 1.46918 * 118.73922 * 306.39780 * 6 5 3 14 14 C 1.53194 * 108.78089 * 53.60697 * 13 6 5 15 15 C 1.53037 * 109.52220 * 184.85013 * 3 2 1 16 16 H 1.08996 * 109.46349 * 58.64778 * 15 3 2 17 17 N 1.46505 * 109.46151 * 298.69005 * 15 3 2 18 18 C 1.36937 * 120.00283 * 155.00159 * 17 15 3 19 19 H 1.08005 * 119.99379 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00260 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99851 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99880 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46800 * 90.00110 * 22 20 18 24 24 H 1.48502 * 109.47322 * 210.00188 * 22 20 18 25 25 H 1.48499 * 109.47134 * 330.00669 * 22 20 18 26 26 H 1.09005 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47568 * 300.00000 * 1 2 3 28 28 H 1.09005 * 109.47143 * 60.00668 * 1 2 3 29 29 H 1.08993 * 109.47568 * 240.00000 * 2 1 3 30 30 H 1.09001 * 109.46472 * 119.99584 * 2 1 3 31 31 H 1.08998 * 109.58804 * 294.40784 * 5 3 2 32 32 H 1.09003 * 109.58394 * 54.83361 * 5 3 2 33 33 H 1.09004 * 109.47107 * 299.99885 * 9 7 6 34 34 H 1.08994 * 109.47315 * 60.00032 * 9 7 6 35 35 H 1.09003 * 115.55289 * 29.41382 * 10 9 7 36 36 H 1.09001 * 117.50092 * 359.97438 * 11 10 9 37 37 H 1.09002 * 117.50248 * 145.02066 * 11 10 9 38 38 H 1.08996 * 117.49951 * 214.98192 * 12 10 9 39 39 H 1.09000 * 117.49567 * 359.97025 * 12 10 9 40 40 H 1.09008 * 109.58859 * 293.81127 * 13 6 5 41 41 H 1.09000 * 109.70348 * 173.46523 * 13 6 5 42 42 H 1.09003 * 109.49900 * 185.41596 * 14 13 6 43 43 H 1.08990 * 109.49871 * 65.31214 * 14 13 6 44 44 H 0.97002 * 120.00009 * 334.99674 * 17 15 3 45 45 H 0.96999 * 119.99561 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6348 2.1281 1.3088 6 7 2.2407 3.4660 1.3490 7 6 1.4802 4.5580 1.5629 8 8 0.2839 4.4416 1.7249 9 6 2.1163 5.9235 1.6009 10 6 1.0403 6.9805 1.8577 11 6 0.7876 8.0132 0.7575 12 6 1.5017 8.4270 2.0466 13 6 3.6912 3.5909 1.1516 14 6 4.0732 2.8891 -0.1555 15 6 3.5654 1.4457 -0.1220 16 1 3.8574 0.9367 -1.0405 17 7 4.1485 0.7497 1.0278 18 6 5.3869 0.1746 0.9242 19 1 5.9336 0.2337 -0.0054 20 6 5.9391 -0.4854 2.0134 21 7 7.1291 -1.0386 1.9135 22 14 4.9931 -0.5882 3.6209 23 1 4.1509 -1.8113 3.6222 24 1 5.9496 -0.6445 4.7555 25 1 4.1266 0.6094 3.7629 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 0.5494 2.2168 1.3541 32 1 1.9911 1.5401 2.1547 33 1 2.8565 5.9575 2.4003 34 1 2.6029 6.1244 0.6465 35 1 0.1821 6.6458 2.4405 36 1 1.3882 7.9399 -0.1492 37 1 -0.2367 8.3582 0.6166 38 1 0.9469 9.0440 2.7534 39 1 2.5719 8.6255 1.9884 40 1 4.2151 3.1223 1.9847 41 1 3.9649 4.6444 1.0941 42 1 5.1576 2.8907 -0.2658 43 1 3.6206 3.4145 -0.9963 44 1 3.6573 0.6964 1.8626 45 1 7.5151 -1.4994 2.6748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037766227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:06 Heat of formation + Delta-G solvation = -9.877900 kcal Electronic energy + Delta-G solvation = -23203.194457 eV Core-core repulsion = 20028.243482 eV Total energy + Delta-G solvation = -3174.950974 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.24693 -38.29413 -36.95011 -34.55206 -33.87592 -31.78009 -30.17477 -29.82130 -28.32836 -25.02984 -23.93151 -23.15579 -22.53712 -21.15115 -20.83888 -19.45635 -18.27484 -17.91069 -16.93852 -16.18247 -15.58433 -15.04254 -14.74488 -14.49220 -14.12023 -14.05960 -13.66019 -13.45419 -13.36172 -13.09088 -12.53492 -12.47252 -12.39347 -12.01210 -11.69002 -11.60780 -11.47204 -11.28234 -11.07932 -10.96393 -10.80885 -10.51342 -10.38061 -10.37960 -10.23000 -10.14832 -9.82117 -9.59182 -9.55483 -8.97690 -8.34099 -7.30899 -5.81740 -3.16919 2.77542 3.15398 3.31771 3.35142 3.41698 3.67315 4.48244 4.53892 4.59055 4.77443 4.93488 5.00169 5.10603 5.21432 5.25418 5.33147 5.38792 5.45127 5.46763 5.51393 5.55186 5.56190 5.64299 5.66749 5.72960 5.77713 5.90302 5.94195 6.02249 6.06606 6.17669 6.19290 6.26958 6.30863 6.43910 6.51612 6.55835 6.65866 6.74945 6.89467 7.63040 7.94806 8.33343 8.37548 9.15808 9.88504 10.08444 11.36729 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.005164 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.424852 B = 5420.451294 C = 6101.418074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.071 0.929 5 C 0.117 3.883 6 N -0.606 5.606 7 C 0.515 3.485 8 O -0.552 6.552 9 C -0.110 4.110 10 C -0.138 4.138 11 C -0.179 4.179 12 C -0.182 4.182 13 C 0.111 3.889 14 C -0.150 4.150 15 C 0.184 3.816 16 H 0.060 0.940 17 N -0.744 5.744 18 C -0.241 4.241 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.933 5.933 22 Si 0.877 3.123 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.279 1.279 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 13.716 -2.832 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.005 4.005 6 N -0.338 5.338 7 C 0.304 3.696 8 O -0.431 6.431 9 C -0.149 4.149 10 C -0.156 4.156 11 C -0.216 4.216 12 C -0.219 4.219 13 C -0.011 4.011 14 C -0.191 4.191 15 C 0.075 3.925 16 H 0.078 0.922 17 N -0.387 5.387 18 C -0.371 4.371 19 H 0.108 0.892 20 C -0.188 4.188 21 N -0.581 5.581 22 Si 0.708 3.292 23 H -0.210 1.210 24 H -0.218 1.218 25 H -0.205 1.205 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.400 13.548 -2.818 17.929 hybrid contribution -0.317 -0.169 1.230 1.282 sum -11.718 13.380 -1.588 17.856 Atomic orbital electron populations 1.21859 0.96611 1.01168 1.01494 1.21431 0.94502 0.95716 1.03273 1.21800 0.97383 0.96190 0.97268 0.91030 1.21665 0.99077 0.81921 0.97869 1.48171 1.08716 1.06546 1.70355 1.20511 0.86880 0.86121 0.76115 1.90639 1.15047 1.86675 1.50690 1.21240 0.98303 0.91485 1.03917 1.22066 1.00868 0.89174 1.03507 1.23028 1.01630 1.03866 0.93049 1.23004 1.00862 0.97606 1.00428 1.21751 0.79068 1.00388 0.99921 1.22500 1.02264 0.98825 0.95494 1.20189 0.89458 0.90703 0.92192 0.92194 1.42846 1.19660 1.65885 1.10336 1.19057 0.92105 1.26699 0.99205 0.89165 1.24624 0.96441 1.00271 0.97487 1.69689 1.16310 1.41262 1.30834 0.86676 0.79449 0.77851 0.85223 1.21029 1.21764 1.20516 0.93039 0.92850 0.93123 0.91504 0.91189 0.89313 0.91758 0.88568 0.88833 0.86527 0.88877 0.88893 0.88811 0.88764 0.90231 0.90827 0.90210 0.92940 0.80591 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.16 0.36 -1.60 16 2 C -0.11 -1.66 5.19 -26.73 -0.14 -1.80 16 3 C -0.11 -1.63 2.14 -90.50 -0.19 -1.82 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 1.87 5.03 -3.71 -0.02 1.85 16 6 N -0.61 -9.20 2.97 -172.77 -0.51 -9.71 16 7 C 0.52 7.73 7.70 -10.99 -0.08 7.64 16 8 O -0.55 -9.91 14.98 5.55 0.08 -9.83 16 9 C -0.11 -1.23 4.33 -27.89 -0.12 -1.36 16 10 C -0.14 -1.51 5.41 -90.62 -0.49 -2.00 16 11 C -0.18 -1.68 10.18 -26.69 -0.27 -1.95 16 12 C -0.18 -1.59 10.25 -26.69 -0.27 -1.86 16 13 C 0.11 1.62 6.08 -3.71 -0.02 1.60 16 14 C -0.15 -2.30 5.78 -26.61 -0.15 -2.46 16 15 C 0.18 3.23 2.53 -67.89 -0.17 3.06 16 16 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 17 N -0.74 -15.95 3.53 -53.38 -0.19 -16.14 16 18 C -0.24 -6.31 10.41 -15.06 -0.16 -6.46 16 19 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 20 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -28.33 13.97 55.49 0.78 -27.56 16 22 Si 0.88 21.44 27.74 -169.99 -4.71 16.72 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.18 7.70 -51.93 -0.40 0.78 16 31 H 0.09 1.43 5.72 -51.93 -0.30 1.14 16 32 H 0.06 1.12 6.64 -51.93 -0.34 0.77 16 33 H 0.10 0.97 7.94 -51.93 -0.41 0.56 16 34 H 0.09 0.92 7.43 -51.93 -0.39 0.53 16 35 H 0.12 1.50 7.31 -51.93 -0.38 1.12 16 36 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.35 7.74 -51.92 -0.40 0.95 16 41 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 42 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.36 7.82 3.81 -40.82 -0.16 7.67 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -30.42 346.79 -8.83 -39.25 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.67 Total: 9.10 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -1.83 Total: -7.06 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.07 Total: -53.41 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.71 Total: 16.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.42 -8.83 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037766227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.368 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds