Wall clock time and date at job start Tue Mar 31 2020 03:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46745 * 2 1 4 4 H 1.08996 * 109.49755 * 304.93278 * 3 2 1 5 5 C 1.53196 * 109.49721 * 64.99661 * 3 2 1 6 6 N 1.46929 * 108.77486 * 174.61346 * 5 3 2 7 7 C 1.34779 * 120.62811 * 126.39016 * 6 5 3 8 8 O 1.21284 * 119.99950 * 0.02562 * 7 6 5 9 9 C 1.50692 * 120.00005 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47303 * 180.02562 * 9 7 6 11 11 C 1.53000 * 117.49826 * 243.74787 * 10 9 7 12 12 C 1.53003 * 117.50212 * 175.08923 * 10 9 7 13 13 C 1.46918 * 118.73922 * 306.39780 * 6 5 3 14 14 C 1.53194 * 108.78089 * 53.60697 * 13 6 5 15 15 C 1.53037 * 109.52220 * 184.85013 * 3 2 1 16 16 H 1.08996 * 109.46349 * 58.64778 * 15 3 2 17 17 N 1.46505 * 109.46151 * 298.69005 * 15 3 2 18 18 C 1.36937 * 120.00283 * 155.00159 * 17 15 3 19 19 H 1.08005 * 119.99379 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00260 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99851 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99880 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46800 * 90.00110 * 22 20 18 24 24 H 1.48502 * 109.47322 * 210.00188 * 22 20 18 25 25 H 1.48499 * 109.47134 * 330.00669 * 22 20 18 26 26 H 1.09005 * 109.47003 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47568 * 300.00000 * 1 2 3 28 28 H 1.09005 * 109.47143 * 60.00668 * 1 2 3 29 29 H 1.08993 * 109.47568 * 240.00000 * 2 1 3 30 30 H 1.09001 * 109.46472 * 119.99584 * 2 1 3 31 31 H 1.08998 * 109.58804 * 294.40784 * 5 3 2 32 32 H 1.09003 * 109.58394 * 54.83361 * 5 3 2 33 33 H 1.09004 * 109.47107 * 299.99885 * 9 7 6 34 34 H 1.08994 * 109.47315 * 60.00032 * 9 7 6 35 35 H 1.09003 * 115.55289 * 29.41382 * 10 9 7 36 36 H 1.09001 * 117.50092 * 359.97438 * 11 10 9 37 37 H 1.09002 * 117.50248 * 145.02066 * 11 10 9 38 38 H 1.08996 * 117.49951 * 214.98192 * 12 10 9 39 39 H 1.09000 * 117.49567 * 359.97025 * 12 10 9 40 40 H 1.09008 * 109.58859 * 293.81127 * 13 6 5 41 41 H 1.09000 * 109.70348 * 173.46523 * 13 6 5 42 42 H 1.09003 * 109.49900 * 185.41596 * 14 13 6 43 43 H 1.08990 * 109.49871 * 65.31214 * 14 13 6 44 44 H 0.97002 * 120.00009 * 334.99674 * 17 15 3 45 45 H 0.96999 * 119.99561 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6348 2.1281 1.3088 6 7 2.2407 3.4660 1.3490 7 6 1.4802 4.5580 1.5629 8 8 0.2839 4.4416 1.7249 9 6 2.1163 5.9235 1.6009 10 6 1.0403 6.9805 1.8577 11 6 0.7876 8.0132 0.7575 12 6 1.5017 8.4270 2.0466 13 6 3.6912 3.5909 1.1516 14 6 4.0732 2.8891 -0.1555 15 6 3.5654 1.4457 -0.1220 16 1 3.8574 0.9367 -1.0405 17 7 4.1485 0.7497 1.0278 18 6 5.3869 0.1746 0.9242 19 1 5.9336 0.2337 -0.0054 20 6 5.9391 -0.4854 2.0134 21 7 7.1291 -1.0386 1.9135 22 14 4.9931 -0.5882 3.6209 23 1 4.1509 -1.8113 3.6222 24 1 5.9496 -0.6445 4.7555 25 1 4.1266 0.6094 3.7629 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 0.5494 2.2168 1.3541 32 1 1.9911 1.5401 2.1547 33 1 2.8565 5.9575 2.4003 34 1 2.6029 6.1244 0.6465 35 1 0.1821 6.6458 2.4405 36 1 1.3882 7.9399 -0.1492 37 1 -0.2367 8.3582 0.6166 38 1 0.9469 9.0440 2.7534 39 1 2.5719 8.6255 1.9884 40 1 4.2151 3.1223 1.9847 41 1 3.9649 4.6444 1.0941 42 1 5.1576 2.8907 -0.2658 43 1 3.6206 3.4145 -0.9963 44 1 3.6573 0.6964 1.8626 45 1 7.5151 -1.4994 2.6748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037766227.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:06 Heat of formation + Delta-G solvation = -26.914002 kcal Electronic energy + Delta-G solvation = -23203.933197 eV Core-core repulsion = 20028.243482 eV Total energy + Delta-G solvation = -3175.689715 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46158 -39.50737 -37.84846 -35.94818 -35.41023 -33.56011 -31.45765 -31.18775 -29.50480 -26.38021 -25.18275 -24.95005 -23.20309 -22.24568 -21.95257 -20.61500 -19.87234 -19.55572 -18.12880 -17.25590 -16.85146 -16.41694 -16.14819 -15.88185 -15.47186 -15.10157 -14.91683 -14.85039 -14.56683 -14.35708 -14.19991 -13.74234 -13.48293 -13.25379 -13.02399 -12.95152 -12.65230 -12.47663 -12.39510 -12.31779 -12.06505 -12.01958 -11.86853 -11.61626 -11.53688 -11.26450 -11.15979 -10.97477 -10.89590 -10.65876 -9.63103 -9.22844 -7.98416 -5.28820 1.35659 1.37464 1.43990 1.63408 2.00650 2.48673 2.93536 3.34044 3.50643 3.61388 3.77265 3.78917 3.95055 4.00428 4.06175 4.18954 4.22351 4.30818 4.36341 4.42774 4.52895 4.57649 4.63656 4.66678 4.77059 4.80915 4.82843 4.87826 4.96088 5.02745 5.06491 5.15160 5.19385 5.23343 5.28680 5.29913 5.36567 5.37265 5.47564 5.65013 5.84546 6.25972 6.46476 7.12635 7.17204 7.89724 8.07828 9.23603 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017814 B = 0.005164 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.424852 B = 5420.451294 C = 6101.418074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.094 4.094 4 H 0.089 0.911 5 C 0.119 3.881 6 N -0.607 5.607 7 C 0.512 3.488 8 O -0.585 6.585 9 C -0.103 4.103 10 C -0.159 4.159 11 C -0.179 4.179 12 C -0.165 4.165 13 C 0.115 3.885 14 C -0.143 4.143 15 C 0.176 3.824 16 H 0.050 0.950 17 N -0.742 5.742 18 C -0.211 4.211 19 H 0.063 0.937 20 C -0.057 4.057 21 N -0.984 5.984 22 Si 0.938 3.062 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.259 1.259 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.054 0.946 41 H 0.111 0.889 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.361 0.639 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 16.002 -3.221 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.114 4.114 4 H 0.107 0.893 5 C -0.004 4.004 6 N -0.339 5.339 7 C 0.302 3.698 8 O -0.466 6.466 9 C -0.142 4.142 10 C -0.178 4.178 11 C -0.216 4.216 12 C -0.202 4.202 13 C -0.007 4.007 14 C -0.183 4.183 15 C 0.068 3.932 16 H 0.068 0.932 17 N -0.386 5.386 18 C -0.342 4.342 19 H 0.081 0.919 20 C -0.249 4.249 21 N -0.635 5.635 22 Si 0.767 3.233 23 H -0.210 1.210 24 H -0.227 1.227 25 H -0.184 1.184 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.130 0.870 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.195 0.805 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.719 15.879 -3.232 20.600 hybrid contribution 0.030 -0.846 1.240 1.501 sum -12.689 15.032 -1.993 19.773 Atomic orbital electron populations 1.21793 0.94652 1.02024 1.01964 1.21409 0.96231 0.95211 1.02040 1.21692 0.95421 0.96608 0.97641 0.89315 1.21553 0.99020 0.82493 0.97347 1.48237 1.08933 1.06341 1.70353 1.21206 0.86494 0.87192 0.74882 1.90627 1.16685 1.87248 1.52045 1.21283 0.98413 0.88844 1.05637 1.21964 1.00576 0.90323 1.04941 1.23128 1.02110 1.02798 0.93516 1.23094 1.01812 0.95459 0.99852 1.21746 0.78401 1.02347 0.98232 1.22371 1.01525 0.97247 0.97203 1.20436 0.91007 0.91652 0.90129 0.93235 1.42810 1.18129 1.66000 1.11661 1.19013 0.92998 1.24641 0.97598 0.91902 1.25255 0.97426 1.01296 1.00879 1.69850 1.18459 1.43578 1.31652 0.85678 0.78136 0.78435 0.81058 1.21033 1.22670 1.18402 0.92078 0.93067 0.91891 0.91697 0.93445 0.89434 0.93499 0.87055 0.86560 0.89098 0.87797 0.88900 0.88184 0.87211 0.92749 0.87050 0.91508 0.90165 0.80485 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.67 71.98 0.70 -2.78 16 2 C -0.11 -3.19 5.19 30.60 0.16 -3.03 16 3 C -0.09 -2.71 2.14 -10.71 -0.02 -2.73 16 4 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 5 C 0.12 3.62 5.03 86.36 0.43 4.05 16 6 N -0.61 -17.07 2.97 -818.90 -2.43 -19.50 16 7 C 0.51 14.21 7.70 87.65 0.67 14.89 16 8 O -0.59 -20.33 14.98 -3.04 -0.05 -20.38 16 9 C -0.10 -1.97 4.33 29.84 0.13 -1.84 16 10 C -0.16 -3.14 5.41 -10.79 -0.06 -3.20 16 11 C -0.18 -2.86 10.18 30.62 0.31 -2.55 16 12 C -0.17 -2.36 10.25 30.62 0.31 -2.05 16 13 C 0.11 3.04 6.08 86.36 0.52 3.57 16 14 C -0.14 -4.07 5.78 30.67 0.18 -3.89 16 15 C 0.18 5.96 2.53 45.02 0.11 6.07 16 16 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 17 N -0.74 -31.57 3.53 -322.81 -1.14 -32.71 16 18 C -0.21 -11.21 10.41 84.03 0.87 -10.34 16 19 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 20 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 21 N -0.98 -61.42 13.97 21.65 0.30 -61.12 16 22 Si 0.94 44.85 27.74 68.60 1.90 46.75 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 24 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 25 H -0.26 -11.34 6.52 99.48 0.65 -10.70 16 26 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.05 1.23 6.70 -2.39 -0.02 1.22 16 28 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.57 7.70 -2.39 -0.02 1.56 16 31 H 0.09 2.72 5.72 -2.39 -0.01 2.70 16 32 H 0.05 1.59 6.64 -2.39 -0.02 1.57 16 33 H 0.11 1.82 7.94 -2.39 -0.02 1.80 16 34 H 0.12 1.73 7.43 -2.39 -0.02 1.71 16 35 H 0.09 2.28 7.31 -2.39 -0.02 2.26 16 36 H 0.10 1.43 8.03 -2.39 -0.02 1.42 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.05 1.75 7.74 -2.38 -0.02 1.73 16 41 H 0.11 2.12 5.95 -2.39 -0.01 2.10 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.36 15.42 3.81 -92.71 -0.35 15.07 16 45 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -67.14 346.79 3.93 -63.20 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.55 Total: 30.35 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 4.80 Total: -6.61 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -3.27 Total: -113.32 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.90 Total: 46.75 kcal Total: -67.14 3.93 -63.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037766227.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.291 kcal (2) G-P(sol) polarization free energy of solvation -67.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds