Wall clock time and date at job start Tue Mar 31 2020 03:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47238 * 2 1 4 4 H 1.09003 * 109.52124 * 54.92051 * 3 2 1 5 5 C 1.53169 * 109.48198 * 294.84590 * 3 2 1 6 6 N 1.46924 * 108.76669 * 185.40141 * 5 3 2 7 7 C 1.34779 * 120.63225 * 233.62657 * 6 5 3 8 8 O 1.21604 * 119.99636 * 354.86810 * 7 6 5 9 9 C 1.47100 * 119.99934 * 174.86147 * 7 6 5 10 10 C 1.32996 * 119.99933 * 185.49587 * 9 7 6 11 11 C 1.50696 * 119.99755 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99699 * 180.02562 * 10 9 7 13 13 C 1.46931 * 118.73724 * 53.61501 * 6 5 3 14 14 C 1.53193 * 108.77566 * 306.38728 * 13 6 5 15 15 C 1.53041 * 109.49776 * 174.99972 * 3 2 1 16 16 H 1.08999 * 109.46044 * 301.32301 * 15 3 2 17 17 N 1.46499 * 109.45928 * 61.30089 * 15 3 2 18 18 C 1.36937 * 119.99912 * 205.02414 * 17 15 3 19 19 H 1.08002 * 119.99924 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99817 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00348 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47224 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.47463 * 240.00133 * 22 20 18 25 25 H 1.48503 * 109.46898 * 119.99916 * 22 20 18 26 26 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47101 * 300.00018 * 1 2 3 28 28 H 1.09001 * 109.46969 * 59.99880 * 1 2 3 29 29 H 1.09002 * 109.47101 * 239.99982 * 2 1 3 30 30 H 1.09006 * 109.47161 * 120.00550 * 2 1 3 31 31 H 1.09005 * 109.58457 * 65.62167 * 5 3 2 32 32 H 1.08998 * 109.59023 * 305.19178 * 5 3 2 33 33 H 1.08002 * 120.00301 * 5.49803 * 9 7 6 34 34 H 1.08998 * 109.47629 * 59.99763 * 11 10 9 35 35 H 1.08998 * 109.47004 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.47099 * 299.99692 * 11 10 9 37 37 H 1.08994 * 109.47099 * 90.00418 * 12 10 9 38 38 H 1.09007 * 109.46767 * 210.00042 * 12 10 9 39 39 H 1.08993 * 109.47629 * 329.99662 * 12 10 9 40 40 H 1.09001 * 109.58317 * 186.59530 * 13 6 5 41 41 H 1.09006 * 109.58621 * 66.17339 * 13 6 5 42 42 H 1.08997 * 109.49403 * 294.68534 * 14 13 6 43 43 H 1.08995 * 109.52599 * 174.60518 * 14 13 6 44 44 H 0.96997 * 120.00207 * 25.02117 * 17 15 3 45 45 H 0.97002 * 119.99452 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9827 0.8408 5 6 1.6382 2.1263 -1.3103 6 7 2.2445 3.4640 -1.3506 7 6 1.4849 4.5561 -1.5672 8 8 0.3026 4.4331 -1.8241 9 6 2.0858 5.8966 -1.4927 10 6 1.3170 6.9768 -1.5977 11 6 -0.1698 6.8273 -1.7925 12 6 1.9328 8.3501 -1.5219 13 6 3.6947 3.5887 -1.1500 14 6 4.0734 2.8882 0.1587 15 6 3.5652 1.4450 0.1257 16 1 3.8546 0.9370 1.0457 17 7 4.1507 0.7475 -1.0219 18 6 5.3883 0.1714 -0.9144 19 1 5.9326 0.2308 0.0166 20 6 5.9428 -0.4899 -2.0016 21 7 5.2793 -0.5628 -3.1360 22 14 7.6307 -1.2765 -1.8548 23 1 8.1624 -1.0557 -0.4859 24 1 8.5499 -0.6651 -2.8478 25 1 7.5215 -2.7348 -2.1135 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5529 2.2155 -1.3582 32 1 1.9962 1.5373 -2.1547 33 1 3.1514 6.0038 -1.3527 34 1 -0.5940 6.2832 -0.9486 35 1 -0.6289 7.8138 -1.8560 36 1 -0.3621 6.2767 -2.7134 37 1 2.2150 8.6774 -2.5225 38 1 1.2103 9.0495 -1.1011 39 1 2.8182 8.3168 -0.8872 40 1 3.9663 4.6428 -1.0921 41 1 4.2204 3.1189 -1.9813 42 1 3.6191 3.4148 0.9979 43 1 5.1575 2.8897 0.2722 44 1 3.6617 0.6938 -1.8578 45 1 4.4026 -0.1546 -3.2121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037777356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:19 Heat of formation + Delta-G solvation = -19.100031 kcal Electronic energy + Delta-G solvation = -23213.650490 eV Core-core repulsion = 20038.299614 eV Total energy + Delta-G solvation = -3175.350876 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13809 -38.13817 -35.41813 -34.48402 -33.94003 -31.76691 -29.52138 -28.84993 -27.88795 -27.48673 -24.72059 -23.81573 -23.42019 -20.94755 -20.58253 -18.73492 -17.78121 -17.37288 -17.06918 -15.54773 -15.25113 -14.93485 -14.41480 -14.19866 -13.96727 -13.85977 -13.68719 -13.35052 -13.28754 -13.07382 -12.75440 -12.50137 -12.29922 -12.16397 -11.96808 -11.71914 -11.54045 -11.44757 -11.15474 -10.85625 -10.67478 -10.52980 -10.28452 -10.17391 -10.03457 -9.85996 -9.29921 -9.17748 -9.14965 -8.90602 -8.15495 -7.02976 -6.10275 -3.10354 1.43042 3.33739 3.48550 3.50718 3.56750 3.65937 4.62261 4.65955 4.76133 4.95561 5.16213 5.20727 5.27902 5.33149 5.38281 5.47521 5.52249 5.60055 5.62198 5.64796 5.67638 5.75019 5.76402 5.84515 5.86182 6.00912 6.08648 6.10134 6.15718 6.28309 6.32891 6.37361 6.46174 6.48267 6.52477 6.63899 6.65909 6.73627 6.85805 6.99773 7.77721 7.81824 8.47042 8.74712 9.21692 10.08172 10.23961 11.37607 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.004907 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.169930 B = 5704.568261 C = 6634.517151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.067 0.933 5 C 0.121 3.879 6 N -0.600 5.600 7 C 0.543 3.457 8 O -0.555 6.555 9 C -0.231 4.231 10 C -0.044 4.044 11 C -0.113 4.113 12 C -0.125 4.125 13 C 0.114 3.886 14 C -0.150 4.150 15 C 0.184 3.816 16 H 0.051 0.949 17 N -0.730 5.730 18 C -0.328 4.328 19 H 0.064 0.936 20 C -0.044 4.044 21 N -0.945 5.945 22 Si 1.083 2.917 23 H -0.296 1.296 24 H -0.294 1.294 25 H -0.294 1.294 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.367 0.633 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.431 13.198 5.938 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.085 0.915 5 C -0.001 4.001 6 N -0.331 5.331 7 C 0.335 3.665 8 O -0.437 6.437 9 C -0.251 4.251 10 C -0.046 4.046 11 C -0.169 4.169 12 C -0.181 4.181 13 C -0.009 4.009 14 C -0.191 4.191 15 C 0.074 3.926 16 H 0.069 0.931 17 N -0.373 5.373 18 C -0.459 4.459 19 H 0.082 0.918 20 C -0.242 4.242 21 N -0.590 5.590 22 Si 0.914 3.086 23 H -0.222 1.222 24 H -0.222 1.222 25 H -0.221 1.221 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.201 0.799 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.724 12.229 5.191 14.890 hybrid contribution -0.937 0.815 0.670 1.411 sum -7.661 13.044 5.861 16.223 Atomic orbital electron populations 1.21851 0.96686 1.01092 1.01399 1.21403 0.94387 0.95745 1.03163 1.21770 0.97420 0.96090 0.97171 0.91502 1.21613 0.98802 0.81887 0.97831 1.48007 1.08600 1.06459 1.70020 1.18505 0.85963 0.84997 0.77030 1.90717 1.16040 1.87035 1.49861 1.22557 1.00494 0.92070 1.09993 1.22530 0.96576 0.94581 0.90872 1.21007 0.91027 1.00710 1.04204 1.20992 1.01007 0.93382 1.02733 1.21764 0.79244 1.00235 0.99614 1.22511 1.01772 0.99152 0.95636 1.20148 0.89555 0.90603 0.92289 0.93132 1.42483 1.19440 1.65148 1.10269 1.20082 0.94696 1.31475 0.99637 0.91784 1.25679 1.05550 1.00196 0.92736 1.70830 1.14530 1.47752 1.25908 0.83177 0.74760 0.76259 0.74361 1.22212 1.22154 1.22143 0.93097 0.93302 0.92782 0.90929 0.91977 0.89548 0.91483 0.85443 0.90358 0.93292 0.89765 0.90465 0.91173 0.91224 0.90832 0.90261 0.93254 0.90802 0.79882 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.11 -1.77 5.19 -26.73 -0.14 -1.91 16 3 C -0.10 -1.74 2.14 -90.51 -0.19 -1.94 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 5 C 0.12 2.10 5.01 -3.72 -0.02 2.08 16 6 N -0.60 -10.06 2.97 -174.17 -0.52 -10.58 16 7 C 0.54 9.02 7.59 -12.66 -0.10 8.92 16 8 O -0.56 -10.29 12.54 5.27 0.07 -10.22 16 9 C -0.23 -3.08 8.95 -37.81 -0.34 -3.42 16 10 C -0.04 -0.50 6.11 -101.17 -0.62 -1.12 16 11 C -0.11 -1.35 8.33 36.00 0.30 -1.05 16 12 C -0.12 -1.01 9.98 36.00 0.36 -0.65 16 13 C 0.11 1.86 6.09 -3.71 -0.02 1.84 16 14 C -0.15 -2.53 5.78 -26.61 -0.15 -2.68 16 15 C 0.18 3.50 2.53 -67.89 -0.17 3.33 16 16 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 17 N -0.73 -16.89 3.72 -53.38 -0.20 -17.09 16 18 C -0.33 -8.70 9.93 -15.06 -0.15 -8.85 16 19 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 20 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 21 N -0.94 -28.41 13.70 55.49 0.76 -27.65 16 22 Si 1.08 25.48 29.92 -169.99 -5.09 20.40 16 23 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 29 H 0.07 1.36 7.70 -51.93 -0.40 0.96 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 1.50 5.75 -51.93 -0.30 1.20 16 32 H 0.07 1.28 6.64 -51.93 -0.34 0.93 16 33 H 0.13 1.50 5.87 -52.49 -0.31 1.19 16 34 H 0.08 1.04 7.38 -51.93 -0.38 0.66 16 35 H 0.05 0.46 7.94 -51.93 -0.41 0.04 16 36 H 0.08 1.16 7.07 -51.93 -0.37 0.79 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 39 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 40 H 0.07 1.01 5.30 -51.93 -0.28 0.73 16 41 H 0.08 1.53 7.74 -51.93 -0.40 1.12 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.37 8.93 4.78 -40.82 -0.19 8.73 16 45 H 0.25 7.57 6.77 -40.82 -0.28 7.29 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -30.38 345.64 -8.18 -38.56 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.43 Total: 9.90 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -0.98 Total: -8.53 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.04 Total: -55.32 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.09 Total: 20.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.38 -8.18 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037777356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.461 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds