Wall clock time and date at job start Tue Mar 31 2020 03:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47238 * 2 1 4 4 H 1.09003 * 109.52124 * 54.92051 * 3 2 1 5 5 C 1.53169 * 109.48198 * 294.84590 * 3 2 1 6 6 N 1.46924 * 108.76669 * 185.40141 * 5 3 2 7 7 C 1.34779 * 120.63225 * 233.62657 * 6 5 3 8 8 O 1.21604 * 119.99636 * 354.86810 * 7 6 5 9 9 C 1.47100 * 119.99934 * 174.86147 * 7 6 5 10 10 C 1.32996 * 119.99933 * 185.49587 * 9 7 6 11 11 C 1.50696 * 119.99755 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99699 * 180.02562 * 10 9 7 13 13 C 1.46931 * 118.73724 * 53.61501 * 6 5 3 14 14 C 1.53193 * 108.77566 * 306.38728 * 13 6 5 15 15 C 1.53041 * 109.49776 * 174.99972 * 3 2 1 16 16 H 1.08999 * 109.46044 * 301.32301 * 15 3 2 17 17 N 1.46499 * 109.45928 * 61.30089 * 15 3 2 18 18 C 1.36937 * 119.99912 * 205.02414 * 17 15 3 19 19 H 1.08002 * 119.99924 * 0.02562 * 18 17 15 20 20 C 1.38811 * 119.99817 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00348 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99901 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47224 * 0.02562 * 22 20 18 24 24 H 1.48491 * 109.47463 * 240.00133 * 22 20 18 25 25 H 1.48503 * 109.46898 * 119.99916 * 22 20 18 26 26 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47101 * 300.00018 * 1 2 3 28 28 H 1.09001 * 109.46969 * 59.99880 * 1 2 3 29 29 H 1.09002 * 109.47101 * 239.99982 * 2 1 3 30 30 H 1.09006 * 109.47161 * 120.00550 * 2 1 3 31 31 H 1.09005 * 109.58457 * 65.62167 * 5 3 2 32 32 H 1.08998 * 109.59023 * 305.19178 * 5 3 2 33 33 H 1.08002 * 120.00301 * 5.49803 * 9 7 6 34 34 H 1.08998 * 109.47629 * 59.99763 * 11 10 9 35 35 H 1.08998 * 109.47004 * 179.97438 * 11 10 9 36 36 H 1.09003 * 109.47099 * 299.99692 * 11 10 9 37 37 H 1.08994 * 109.47099 * 90.00418 * 12 10 9 38 38 H 1.09007 * 109.46767 * 210.00042 * 12 10 9 39 39 H 1.08993 * 109.47629 * 329.99662 * 12 10 9 40 40 H 1.09001 * 109.58317 * 186.59530 * 13 6 5 41 41 H 1.09006 * 109.58621 * 66.17339 * 13 6 5 42 42 H 1.08997 * 109.49403 * 294.68534 * 14 13 6 43 43 H 1.08995 * 109.52599 * 174.60518 * 14 13 6 44 44 H 0.96997 * 120.00207 * 25.02117 * 17 15 3 45 45 H 0.97002 * 119.99452 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6047 1.9827 0.8408 5 6 1.6382 2.1263 -1.3103 6 7 2.2445 3.4640 -1.3506 7 6 1.4849 4.5561 -1.5672 8 8 0.3026 4.4331 -1.8241 9 6 2.0858 5.8966 -1.4927 10 6 1.3170 6.9768 -1.5977 11 6 -0.1698 6.8273 -1.7925 12 6 1.9328 8.3501 -1.5219 13 6 3.6947 3.5887 -1.1500 14 6 4.0734 2.8882 0.1587 15 6 3.5652 1.4450 0.1257 16 1 3.8546 0.9370 1.0457 17 7 4.1507 0.7475 -1.0219 18 6 5.3883 0.1714 -0.9144 19 1 5.9326 0.2308 0.0166 20 6 5.9428 -0.4899 -2.0016 21 7 5.2793 -0.5628 -3.1360 22 14 7.6307 -1.2765 -1.8548 23 1 8.1624 -1.0557 -0.4859 24 1 8.5499 -0.6651 -2.8478 25 1 7.5215 -2.7348 -2.1135 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.5529 2.2155 -1.3582 32 1 1.9962 1.5373 -2.1547 33 1 3.1514 6.0038 -1.3527 34 1 -0.5940 6.2832 -0.9486 35 1 -0.6289 7.8138 -1.8560 36 1 -0.3621 6.2767 -2.7134 37 1 2.2150 8.6774 -2.5225 38 1 1.2103 9.0495 -1.1011 39 1 2.8182 8.3168 -0.8872 40 1 3.9663 4.6428 -1.0921 41 1 4.2204 3.1189 -1.9813 42 1 3.6191 3.4148 0.9979 43 1 5.1575 2.8897 0.2722 44 1 3.6617 0.6938 -1.8578 45 1 4.4026 -0.1546 -3.2121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037777356.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:18 Heat of formation + Delta-G solvation = -36.006429 kcal Electronic energy + Delta-G solvation = -23214.383607 eV Core-core repulsion = 20038.299614 eV Total energy + Delta-G solvation = -3176.083993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47676 -39.52496 -36.48668 -35.99668 -35.51729 -33.46583 -30.94108 -30.37993 -28.77918 -28.60256 -26.14483 -25.39988 -25.15195 -22.33347 -21.78210 -20.21118 -19.32745 -18.86341 -18.40809 -16.94877 -16.79905 -16.34770 -15.87801 -15.52506 -15.36459 -15.14706 -14.94633 -14.82585 -14.53658 -14.31454 -14.03284 -13.70604 -13.36212 -13.25169 -13.16321 -13.08674 -12.76256 -12.61528 -12.57761 -12.41672 -12.19423 -12.02039 -11.86550 -11.68079 -11.61545 -11.44898 -11.06854 -10.86430 -10.53423 -10.18036 -9.52420 -9.02199 -8.31066 -5.23957 0.40212 1.60182 1.70764 1.81784 2.04826 2.26511 2.74546 3.46736 3.53265 3.71039 3.75912 3.85241 3.93804 3.98977 4.08111 4.26063 4.29859 4.36470 4.38841 4.50107 4.56762 4.61146 4.69785 4.73651 4.78532 4.84936 4.90067 4.90572 4.96333 5.02830 5.08074 5.13316 5.16478 5.18511 5.24570 5.31471 5.42178 5.53164 5.57311 5.68762 5.69546 6.48684 6.55472 7.15955 7.18291 8.07260 8.20131 9.20290 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.004907 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.169930 B = 5704.568261 C = 6634.517151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.085 0.915 5 C 0.127 3.873 6 N -0.603 5.603 7 C 0.536 3.464 8 O -0.582 6.582 9 C -0.256 4.256 10 C -0.023 4.023 11 C -0.115 4.115 12 C -0.123 4.123 13 C 0.121 3.879 14 C -0.141 4.141 15 C 0.177 3.823 16 H 0.044 0.956 17 N -0.736 5.736 18 C -0.315 4.315 19 H 0.066 0.934 20 C -0.105 4.105 21 N -0.980 5.980 22 Si 1.128 2.872 23 H -0.271 1.271 24 H -0.295 1.295 25 H -0.297 1.297 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.146 0.854 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.358 0.642 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.331 15.533 7.659 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.112 4.112 4 H 0.103 0.897 5 C 0.004 3.996 6 N -0.334 5.334 7 C 0.330 3.670 8 O -0.465 6.465 9 C -0.276 4.276 10 C -0.025 4.025 11 C -0.171 4.171 12 C -0.179 4.179 13 C -0.001 4.001 14 C -0.182 4.182 15 C 0.068 3.932 16 H 0.062 0.938 17 N -0.379 5.379 18 C -0.446 4.446 19 H 0.084 0.916 20 C -0.296 4.296 21 N -0.629 5.629 22 Si 0.954 3.046 23 H -0.196 1.196 24 H -0.222 1.222 25 H -0.225 1.225 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.163 0.837 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.125 0.875 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.191 0.809 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.635 14.600 6.964 17.484 hybrid contribution -1.087 0.176 0.173 1.115 sum -7.722 14.776 7.138 18.136 Atomic orbital electron populations 1.21778 0.94461 1.02053 1.01938 1.21336 0.96322 0.95143 1.01498 1.21663 0.95736 0.96444 0.97328 0.89657 1.21433 0.98641 0.82342 0.97148 1.48054 1.08751 1.06293 1.70347 1.19134 0.85719 0.86016 0.76113 1.90704 1.17234 1.87522 1.51082 1.22534 1.01511 0.90523 1.13076 1.22931 0.96119 0.95999 0.87479 1.20988 0.91836 1.01864 1.02404 1.21088 1.01762 0.91122 1.03949 1.21681 0.78711 1.01828 0.97893 1.22376 1.01302 0.97578 0.96897 1.20384 0.91004 0.91482 0.90301 0.93797 1.42592 1.18634 1.65513 1.11148 1.20380 0.95447 1.29641 0.99170 0.91560 1.26945 1.08486 1.01560 0.92583 1.70944 1.14583 1.49990 1.27376 0.82586 0.71393 0.75098 0.75477 1.19598 1.22239 1.22494 0.92008 0.91645 0.93249 0.94179 0.91956 0.89602 0.94247 0.83675 0.91895 0.90288 0.91937 0.89085 0.89346 0.89993 0.87484 0.93796 0.90520 0.91622 0.80855 0.94868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.67 71.98 0.70 -3.20 16 2 C -0.10 -3.44 5.19 30.59 0.16 -3.28 16 3 C -0.09 -3.04 2.14 -10.72 -0.02 -3.06 16 4 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 5 C 0.13 4.51 5.01 86.36 0.43 4.95 16 6 N -0.60 -20.16 2.97 -823.21 -2.45 -22.60 16 7 C 0.54 17.50 7.59 86.57 0.66 18.15 16 8 O -0.58 -21.67 12.54 -4.04 -0.05 -21.72 16 9 C -0.26 -6.32 8.95 23.43 0.21 -6.11 16 10 C -0.02 -0.48 6.11 -17.62 -0.11 -0.58 16 11 C -0.11 -2.55 8.33 71.23 0.59 -1.95 16 12 C -0.12 -1.49 9.98 71.23 0.71 -0.78 16 13 C 0.12 3.89 6.09 86.36 0.53 4.41 16 14 C -0.14 -4.57 5.78 30.67 0.18 -4.40 16 15 C 0.18 6.69 2.53 45.02 0.11 6.80 16 16 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 17 N -0.74 -34.98 3.72 -322.81 -1.20 -36.19 16 18 C -0.31 -16.89 9.93 84.03 0.83 -16.06 16 19 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 20 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 21 N -0.98 -60.94 13.70 21.65 0.30 -60.64 16 22 Si 1.13 51.72 29.92 68.60 2.05 53.77 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.37 6.70 -2.39 -0.02 1.35 16 29 H 0.04 1.57 7.70 -2.39 -0.02 1.55 16 30 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.09 3.04 5.75 -2.38 -0.01 3.03 16 32 H 0.04 1.61 6.64 -2.39 -0.02 1.59 16 33 H 0.15 2.97 5.87 -2.91 -0.02 2.96 16 34 H 0.06 1.61 7.38 -2.39 -0.02 1.60 16 35 H 0.08 1.25 7.94 -2.39 -0.02 1.23 16 36 H 0.06 1.69 7.07 -2.39 -0.02 1.67 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.80 8.05 -2.38 -0.02 0.78 16 39 H 0.08 0.85 8.07 -2.39 -0.02 0.83 16 40 H 0.11 2.70 5.30 -2.39 -0.01 2.68 16 41 H 0.04 1.73 7.74 -2.38 -0.02 1.71 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.36 18.36 4.78 -92.71 -0.44 17.92 16 45 H 0.24 15.08 6.77 -92.71 -0.63 14.46 16 Total: -1.00 -67.63 345.64 4.77 -62.87 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.67 Total: 35.09 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 5.45 Total: -10.58 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -3.35 Total: -119.43 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.77 kcal Total: -67.63 4.77 -62.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037777356.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.859 kcal (2) G-P(sol) polarization free energy of solvation -67.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds