Wall clock time and date at job start Tue Mar 31 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47322 * 2 1 4 4 H 1.09006 * 109.49563 * 304.93763 * 3 2 1 5 5 C 1.53192 * 109.49654 * 65.00015 * 3 2 1 6 6 N 1.46927 * 108.77166 * 174.58609 * 5 3 2 7 7 C 1.34781 * 120.63010 * 126.41363 * 6 5 3 8 8 O 1.21615 * 119.99680 * 354.74965 * 7 6 5 9 9 C 1.47103 * 120.00152 * 174.74806 * 7 6 5 10 10 C 1.32990 * 119.99850 * 185.07832 * 9 7 6 11 11 C 1.50702 * 120.00079 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99781 * 180.02562 * 10 9 7 13 13 C 1.46925 * 118.74204 * 306.39301 * 6 5 3 14 14 C 1.53193 * 108.77625 * 53.60877 * 13 6 5 15 15 C 1.53038 * 109.31053 * 305.36639 * 14 13 6 16 16 H 1.09002 * 109.46195 * 301.34768 * 15 14 13 17 17 N 1.46495 * 109.45933 * 181.38569 * 15 14 13 18 18 C 1.36937 * 120.00172 * 84.93367 * 17 15 14 19 19 H 1.08002 * 120.00043 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00183 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99955 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00102 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46834 * 59.99897 * 22 20 18 24 24 H 1.48499 * 109.46941 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46940 * 300.00120 * 22 20 18 26 26 H 1.08998 * 109.47630 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47361 * 59.99533 * 1 2 3 28 28 H 1.09010 * 109.46705 * 300.00204 * 1 2 3 29 29 H 1.09003 * 109.46989 * 120.00025 * 2 1 3 30 30 H 1.08994 * 109.46988 * 239.99937 * 2 1 3 31 31 H 1.09005 * 109.58547 * 294.37221 * 5 3 2 32 32 H 1.08996 * 109.58572 * 54.65775 * 5 3 2 33 33 H 1.07993 * 119.99924 * 5.07757 * 9 7 6 34 34 H 1.08996 * 109.47302 * 60.00682 * 11 10 9 35 35 H 1.09000 * 109.47067 * 180.02562 * 11 10 9 36 36 H 1.08995 * 109.47176 * 299.99767 * 11 10 9 37 37 H 1.09001 * 109.47199 * 90.00373 * 12 10 9 38 38 H 1.09007 * 109.46869 * 209.99844 * 12 10 9 39 39 H 1.08997 * 109.47398 * 329.99723 * 12 10 9 40 40 H 1.09004 * 109.58602 * 173.39519 * 13 6 5 41 41 H 1.08997 * 109.58363 * 293.82377 * 13 6 5 42 42 H 1.08995 * 109.49607 * 65.31864 * 14 13 6 43 43 H 1.08999 * 109.49776 * 185.41659 * 14 13 6 44 44 H 0.97003 * 119.99868 * 264.93111 * 17 15 14 45 45 H 0.96998 * 119.99996 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6351 2.1280 1.3088 6 7 2.2417 3.4656 1.3493 7 6 1.4818 4.5580 1.5637 8 8 0.2720 4.4535 1.6306 9 6 2.1158 5.8765 1.7167 10 6 1.3769 6.9374 2.0283 11 6 -0.1100 6.7890 2.2240 12 6 2.0263 8.2883 2.1845 13 6 3.6923 3.5898 1.1521 14 6 4.0742 2.8879 -0.1549 15 6 3.5656 1.4449 -0.1217 16 1 3.9989 0.9267 0.7338 17 7 3.9578 0.7607 -1.3563 18 6 5.1961 0.1848 -1.4563 19 1 5.8839 0.2353 -0.6251 20 6 5.5679 -0.4630 -2.6263 21 7 4.7300 -0.5242 -3.6395 22 14 7.2575 -1.2480 -2.7629 23 1 7.4061 -2.2886 -1.7138 24 1 7.4068 -1.8714 -4.1024 25 1 8.3024 -0.2087 -2.5807 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 0.5497 2.2174 1.3538 32 1 1.9886 1.5384 2.1546 33 1 3.1812 5.9829 1.5761 34 1 -0.3013 6.0874 3.0359 35 1 -0.5424 7.7584 2.4717 36 1 -0.5617 6.4141 1.3056 37 1 2.0318 8.8022 1.2233 38 1 1.4660 8.8792 2.9092 39 1 3.0508 8.1607 2.5342 40 1 3.9642 4.6438 1.0938 41 1 4.2157 3.1207 1.9852 42 1 3.6220 3.4138 -0.9958 43 1 5.1586 2.8890 -0.2651 44 1 3.3402 0.7156 -2.1030 45 1 4.9899 -0.9766 -4.4572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037777360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:27 Heat of formation + Delta-G solvation = -21.764974 kcal Electronic energy + Delta-G solvation = -22775.186357 eV Core-core repulsion = 19599.719920 eV Total energy + Delta-G solvation = -3175.466437 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.14337 -38.00712 -35.47561 -34.65480 -33.74066 -31.69151 -29.49819 -29.29867 -27.93823 -27.50783 -24.86755 -23.82439 -22.79289 -20.83028 -20.54378 -19.38144 -17.86688 -17.26937 -17.02319 -15.60490 -15.16470 -14.90608 -14.36302 -14.19234 -13.87119 -13.79965 -13.69444 -13.30691 -13.21314 -13.00252 -12.74892 -12.48906 -12.32442 -12.08587 -12.00459 -11.76046 -11.56615 -11.35179 -11.25751 -10.90501 -10.82616 -10.64752 -10.29508 -10.22263 -10.12407 -9.71608 -9.56363 -9.38292 -9.23198 -8.87994 -8.30657 -6.95602 -5.77071 -3.05699 1.36541 3.23674 3.39938 3.42622 3.47474 3.48364 4.54806 4.58303 4.70503 4.90857 5.17549 5.21356 5.28998 5.29440 5.35490 5.42222 5.51595 5.55595 5.60945 5.62276 5.65767 5.73316 5.73741 5.80176 5.92788 6.03744 6.06600 6.16683 6.19478 6.35813 6.37713 6.41951 6.44279 6.44626 6.50097 6.66277 6.74259 6.86561 6.99776 7.09364 7.65502 7.68400 8.38382 8.41237 9.52498 10.10408 10.45425 11.45355 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021936 B = 0.004167 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.114693 B = 6717.749637 C = 7641.859052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.604 5.604 7 C 0.545 3.455 8 O -0.552 6.552 9 C -0.233 4.233 10 C -0.041 4.041 11 C -0.114 4.114 12 C -0.125 4.125 13 C 0.107 3.893 14 C -0.152 4.152 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.720 5.720 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 12.969 12.338 18.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.336 5.336 7 C 0.337 3.663 8 O -0.433 6.433 9 C -0.254 4.254 10 C -0.043 4.043 11 C -0.171 4.171 12 C -0.182 4.182 13 C -0.017 4.017 14 C -0.193 4.193 15 C 0.073 3.927 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.146 0.854 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.597 12.797 12.372 18.983 hybrid contribution 1.094 -0.479 -0.528 1.306 sum -5.503 12.318 11.844 17.952 Atomic orbital electron populations 1.21839 0.96832 1.00962 1.01305 1.21450 0.94361 0.95779 1.03398 1.21774 0.97565 0.96187 0.96859 0.91275 1.21707 0.99406 0.81565 0.97609 1.48034 1.08438 1.06680 1.70411 1.18514 0.86472 0.84713 0.76621 1.90731 1.13950 1.86360 1.52218 1.22540 1.00607 0.92675 1.09562 1.22550 0.96568 0.94417 0.90746 1.21021 0.91170 1.00830 1.04036 1.21004 1.00753 0.93759 1.02679 1.21908 0.79558 1.01202 0.98982 1.22683 1.02076 0.99273 0.95264 1.20183 0.90827 0.90524 0.91150 0.93495 1.42407 1.16459 1.64438 1.12758 1.19175 0.91827 1.27386 0.98589 0.91310 1.24721 0.98111 1.01553 0.96426 1.69650 1.35317 1.48378 1.04708 0.86306 0.84190 0.79178 0.76720 1.21317 1.21768 1.21347 0.93216 0.93009 0.93235 0.92509 0.89846 0.89211 0.91894 0.85413 0.90286 0.93235 0.89726 0.90395 0.91138 0.91198 0.90316 0.91703 0.92229 0.90650 0.78213 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.67 37.16 0.36 -1.82 16 2 C -0.11 -1.85 5.31 -26.73 -0.14 -2.00 16 3 C -0.10 -1.75 1.93 -90.50 -0.17 -1.93 16 4 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 5 C 0.12 1.81 5.33 -3.71 -0.02 1.79 16 6 N -0.60 -8.91 2.97 -174.16 -0.52 -9.43 16 7 C 0.55 8.23 7.60 -12.66 -0.10 8.13 16 8 O -0.55 -9.54 12.52 5.26 0.07 -9.47 16 9 C -0.23 -2.80 8.93 -37.81 -0.34 -3.14 16 10 C -0.04 -0.43 6.11 -101.17 -0.62 -1.05 16 11 C -0.11 -1.27 8.33 36.01 0.30 -0.97 16 12 C -0.13 -0.91 9.98 36.01 0.36 -0.55 16 13 C 0.11 1.44 6.32 -3.71 -0.02 1.41 16 14 C -0.15 -2.57 5.66 -26.61 -0.15 -2.72 16 15 C 0.18 3.50 2.19 -67.89 -0.15 3.35 16 16 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 17 N -0.72 -17.33 4.33 -53.39 -0.23 -17.56 16 18 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 22 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.66 6.70 -51.92 -0.35 0.31 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.64 7.22 -51.93 -0.37 1.27 16 31 H 0.09 1.41 5.71 -51.93 -0.30 1.12 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.13 1.30 5.91 -52.49 -0.31 0.99 16 34 H 0.08 0.97 7.36 -51.93 -0.38 0.59 16 35 H 0.05 0.43 7.94 -51.93 -0.41 0.01 16 36 H 0.08 1.10 7.09 -51.93 -0.37 0.73 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.43 8.05 -51.93 -0.42 0.01 16 39 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 40 H 0.08 0.89 5.37 -51.93 -0.28 0.61 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.38 10.00 7.51 -40.82 -0.31 9.70 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -30.28 350.98 -8.32 -38.60 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.69 Total: 9.00 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.94 Total: -6.45 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.02 Total: -53.96 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.28 -8.32 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037777360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.835 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds