Wall clock time and date at job start Tue Mar 31 2020 03:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47322 * 2 1 4 4 H 1.09006 * 109.49563 * 304.93763 * 3 2 1 5 5 C 1.53192 * 109.49654 * 65.00015 * 3 2 1 6 6 N 1.46927 * 108.77166 * 174.58609 * 5 3 2 7 7 C 1.34781 * 120.63010 * 126.41363 * 6 5 3 8 8 O 1.21615 * 119.99680 * 354.74965 * 7 6 5 9 9 C 1.47103 * 120.00152 * 174.74806 * 7 6 5 10 10 C 1.32990 * 119.99850 * 185.07832 * 9 7 6 11 11 C 1.50702 * 120.00079 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99781 * 180.02562 * 10 9 7 13 13 C 1.46925 * 118.74204 * 306.39301 * 6 5 3 14 14 C 1.53193 * 108.77625 * 53.60877 * 13 6 5 15 15 C 1.53038 * 109.31053 * 305.36639 * 14 13 6 16 16 H 1.09002 * 109.46195 * 301.34768 * 15 14 13 17 17 N 1.46495 * 109.45933 * 181.38569 * 15 14 13 18 18 C 1.36937 * 120.00172 * 84.93367 * 17 15 14 19 19 H 1.08002 * 120.00043 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00183 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99955 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00102 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46834 * 59.99897 * 22 20 18 24 24 H 1.48499 * 109.46941 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46940 * 300.00120 * 22 20 18 26 26 H 1.08998 * 109.47630 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47361 * 59.99533 * 1 2 3 28 28 H 1.09010 * 109.46705 * 300.00204 * 1 2 3 29 29 H 1.09003 * 109.46989 * 120.00025 * 2 1 3 30 30 H 1.08994 * 109.46988 * 239.99937 * 2 1 3 31 31 H 1.09005 * 109.58547 * 294.37221 * 5 3 2 32 32 H 1.08996 * 109.58572 * 54.65775 * 5 3 2 33 33 H 1.07993 * 119.99924 * 5.07757 * 9 7 6 34 34 H 1.08996 * 109.47302 * 60.00682 * 11 10 9 35 35 H 1.09000 * 109.47067 * 180.02562 * 11 10 9 36 36 H 1.08995 * 109.47176 * 299.99767 * 11 10 9 37 37 H 1.09001 * 109.47199 * 90.00373 * 12 10 9 38 38 H 1.09007 * 109.46869 * 209.99844 * 12 10 9 39 39 H 1.08997 * 109.47398 * 329.99723 * 12 10 9 40 40 H 1.09004 * 109.58602 * 173.39519 * 13 6 5 41 41 H 1.08997 * 109.58363 * 293.82377 * 13 6 5 42 42 H 1.08995 * 109.49607 * 65.31864 * 14 13 6 43 43 H 1.08999 * 109.49776 * 185.41659 * 14 13 6 44 44 H 0.97003 * 119.99868 * 264.93111 * 17 15 14 45 45 H 0.96998 * 119.99996 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6351 2.1280 1.3088 6 7 2.2417 3.4656 1.3493 7 6 1.4818 4.5580 1.5637 8 8 0.2720 4.4535 1.6306 9 6 2.1158 5.8765 1.7167 10 6 1.3769 6.9374 2.0283 11 6 -0.1100 6.7890 2.2240 12 6 2.0263 8.2883 2.1845 13 6 3.6923 3.5898 1.1521 14 6 4.0742 2.8879 -0.1549 15 6 3.5656 1.4449 -0.1217 16 1 3.9989 0.9267 0.7338 17 7 3.9578 0.7607 -1.3563 18 6 5.1961 0.1848 -1.4563 19 1 5.8839 0.2353 -0.6251 20 6 5.5679 -0.4630 -2.6263 21 7 4.7300 -0.5242 -3.6395 22 14 7.2575 -1.2480 -2.7629 23 1 7.4061 -2.2886 -1.7138 24 1 7.4068 -1.8714 -4.1024 25 1 8.3024 -0.2087 -2.5807 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 0.5497 2.2174 1.3538 32 1 1.9886 1.5384 2.1546 33 1 3.1812 5.9829 1.5761 34 1 -0.3013 6.0874 3.0359 35 1 -0.5424 7.7584 2.4717 36 1 -0.5617 6.4141 1.3056 37 1 2.0318 8.8022 1.2233 38 1 1.4660 8.8792 2.9092 39 1 3.0508 8.1607 2.5342 40 1 3.9642 4.6438 1.0938 41 1 4.2157 3.1207 1.9852 42 1 3.6220 3.4138 -0.9958 43 1 5.1586 2.8890 -0.2651 44 1 3.3402 0.7156 -2.1030 45 1 4.9899 -0.9766 -4.4572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037777360.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:27 Heat of formation + Delta-G solvation = -39.017250 kcal Electronic energy + Delta-G solvation = -22775.934471 eV Core-core repulsion = 19599.719920 eV Total energy + Delta-G solvation = -3176.214551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33883 -39.32826 -36.48754 -36.02464 -35.31001 -33.43964 -31.06363 -30.55038 -28.72962 -28.56343 -26.45709 -25.15222 -24.39947 -22.24030 -21.70881 -20.75661 -19.09805 -18.83771 -18.33161 -16.80157 -16.71059 -16.28574 -15.70423 -15.53771 -15.16999 -15.06015 -14.78126 -14.72664 -14.44044 -14.36817 -13.87026 -13.62241 -13.28529 -13.25739 -13.16785 -13.00562 -12.80035 -12.71569 -12.53881 -12.48901 -12.32319 -12.19755 -11.98361 -11.83177 -11.56575 -11.50525 -11.09008 -10.85409 -10.48607 -10.14261 -9.49147 -8.95345 -7.90088 -5.17930 0.44719 1.48915 1.51233 1.57107 2.10837 2.32119 2.58912 3.42703 3.59700 3.76990 3.84172 3.90995 4.02087 4.08342 4.17773 4.34089 4.34663 4.44567 4.47195 4.60159 4.63591 4.72608 4.74754 4.80743 4.82952 4.85528 4.91900 4.93731 5.01129 5.03908 5.09772 5.15825 5.22008 5.29539 5.38362 5.47418 5.52061 5.57447 5.58263 5.63161 5.74361 6.30878 6.52304 7.24480 7.37359 8.13388 8.37152 9.33353 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021936 B = 0.004167 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.114693 B = 6717.749637 C = 7641.859052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.047 0.953 5 C 0.127 3.873 6 N -0.608 5.608 7 C 0.537 3.463 8 O -0.582 6.582 9 C -0.254 4.254 10 C -0.027 4.027 11 C -0.115 4.115 12 C -0.123 4.123 13 C 0.115 3.885 14 C -0.143 4.143 15 C 0.179 3.821 16 H 0.048 0.952 17 N -0.731 5.731 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.076 4.076 21 N -0.972 5.972 22 Si 0.969 3.031 23 H -0.279 1.279 24 H -0.301 1.301 25 H -0.277 1.277 26 H 0.061 0.939 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.150 0.850 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.068 0.932 44 H 0.370 0.630 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 14.767 14.514 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.066 0.934 5 C 0.004 3.996 6 N -0.340 5.340 7 C 0.330 3.670 8 O -0.465 6.465 9 C -0.275 4.275 10 C -0.029 4.029 11 C -0.171 4.171 12 C -0.180 4.180 13 C -0.007 4.007 14 C -0.183 4.183 15 C 0.070 3.930 16 H 0.066 0.934 17 N -0.370 5.370 18 C -0.364 4.364 19 H 0.096 0.904 20 C -0.268 4.268 21 N -0.623 5.623 22 Si 0.798 3.202 23 H -0.205 1.205 24 H -0.227 1.227 25 H -0.203 1.203 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.167 0.833 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.201 0.799 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.736 14.625 14.605 21.450 hybrid contribution 0.736 -0.972 -1.146 1.673 sum -5.000 13.653 13.460 19.813 Atomic orbital electron populations 1.21769 0.94910 1.01893 1.01620 1.21357 0.96047 0.95218 1.01900 1.21619 0.95858 0.96396 0.97327 0.93433 1.21573 0.99244 0.82147 0.96655 1.48116 1.08961 1.06445 1.70432 1.19113 0.86244 0.85735 0.75878 1.90719 1.15292 1.86873 1.53643 1.22581 1.01740 0.91320 1.11834 1.22915 0.96081 0.95739 0.88176 1.20985 0.92035 1.01759 1.02351 1.21085 1.01409 0.91690 1.03782 1.21927 0.78886 1.02706 0.97227 1.22479 1.01254 0.97676 0.96936 1.20415 0.92294 0.91331 0.88944 0.93441 1.42586 1.15523 1.65015 1.13901 1.19574 0.92590 1.25849 0.98403 0.90428 1.25493 1.01637 1.03174 0.96490 1.69822 1.37201 1.50111 1.05139 0.85278 0.80319 0.78429 0.76142 1.20514 1.22726 1.20349 0.92005 0.93757 0.91797 0.91667 0.93519 0.89730 0.90323 0.83261 0.91792 0.90563 0.92004 0.89268 0.89566 0.89837 0.87443 0.89828 0.93985 0.91372 0.79880 0.94290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.67 71.98 0.70 -3.41 16 2 C -0.11 -3.60 5.31 30.59 0.16 -3.44 16 3 C -0.09 -3.13 1.93 -10.71 -0.02 -3.15 16 4 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 5 C 0.13 3.72 5.33 86.36 0.46 4.18 16 6 N -0.61 -17.06 2.97 -823.16 -2.45 -19.51 16 7 C 0.54 15.56 7.60 86.57 0.66 16.22 16 8 O -0.58 -20.02 12.52 -4.08 -0.05 -20.07 16 9 C -0.25 -5.51 8.93 23.43 0.21 -5.30 16 10 C -0.03 -0.50 6.11 -17.62 -0.11 -0.61 16 11 C -0.12 -2.39 8.33 71.24 0.59 -1.79 16 12 C -0.12 -1.32 9.98 71.24 0.71 -0.60 16 13 C 0.12 2.82 6.32 86.36 0.55 3.37 16 14 C -0.14 -4.72 5.66 30.67 0.17 -4.55 16 15 C 0.18 6.81 2.19 45.02 0.10 6.91 16 16 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 17 N -0.73 -36.02 4.33 -322.82 -1.40 -37.41 16 18 C -0.23 -12.52 9.93 84.03 0.83 -11.68 16 19 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 21 N -0.97 -59.44 13.06 21.65 0.28 -59.15 16 22 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.63 6.70 -2.38 -0.02 1.62 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.05 1.92 7.22 -2.39 -0.02 1.90 16 31 H 0.08 2.61 5.71 -2.38 -0.01 2.60 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.15 2.49 5.91 -2.91 -0.02 2.47 16 34 H 0.06 1.53 7.36 -2.39 -0.02 1.52 16 35 H 0.08 1.13 7.94 -2.39 -0.02 1.11 16 36 H 0.06 1.59 7.09 -2.39 -0.02 1.57 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.69 8.05 -2.38 -0.02 0.67 16 39 H 0.08 0.72 8.07 -2.39 -0.02 0.70 16 40 H 0.11 2.06 5.37 -2.39 -0.01 2.05 16 41 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 44 H 0.37 20.13 7.51 -92.71 -0.70 19.44 16 45 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -67.19 350.98 4.16 -63.03 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.27 Total: 33.14 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 5.48 Total: -7.69 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -3.56 Total: -116.08 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.05 Total: -20.07 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -67.19 4.16 -63.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037777360.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.013 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds