Wall clock time and date at job start Tue Mar 31 2020 03:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32991 * 120.00195 * 2 1 4 4 C 1.50692 * 120.00147 * 179.97438 * 3 2 1 5 5 C 1.47108 * 119.99758 * 0.02562 * 3 2 1 6 6 O 1.21613 * 119.99987 * 335.15878 * 5 3 2 7 7 N 1.34773 * 119.99830 * 155.15675 * 5 3 2 8 8 C 1.46924 * 120.62962 * 173.73758 * 7 5 3 9 9 C 1.53194 * 108.77552 * 126.41390 * 8 7 5 10 10 C 1.53035 * 109.31052 * 54.63826 * 9 8 7 11 11 H 1.08999 * 109.44942 * 178.61875 * 10 9 8 12 12 N 1.46503 * 109.46382 * 58.65482 * 10 9 8 13 13 C 1.36941 * 120.00196 * 84.92938 * 12 10 9 14 14 H 1.08003 * 119.99720 * 0.02562 * 13 12 10 15 15 C 1.38806 * 120.00274 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00089 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99923 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47315 * 89.99566 * 17 15 13 19 19 H 1.48506 * 109.47056 * 329.99678 * 17 15 13 20 20 H 1.48494 * 109.47132 * 210.00050 * 17 15 13 21 21 C 1.53038 * 109.53961 * 298.63158 * 10 9 8 22 22 H 1.08998 * 109.50102 * 301.41939 * 21 10 9 23 23 C 1.52998 * 109.50076 * 181.34801 * 21 10 9 24 24 C 1.53001 * 109.47317 * 175.00094 * 23 21 10 25 25 C 1.46922 * 120.63432 * 353.76320 * 7 5 3 26 26 H 1.08997 * 109.46929 * 60.00120 * 1 2 3 27 27 H 1.09004 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46825 * 299.99727 * 1 2 3 29 29 H 1.08006 * 119.99962 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47599 * 277.24369 * 4 3 2 31 31 H 1.09000 * 109.47141 * 37.24656 * 4 3 2 32 32 H 1.09002 * 109.46841 * 157.24628 * 4 3 2 33 33 H 1.08994 * 109.59061 * 246.20426 * 8 7 5 34 34 H 1.09005 * 109.59028 * 6.48601 * 8 7 5 35 35 H 1.08999 * 109.49761 * 294.68443 * 9 8 7 36 36 H 1.09007 * 109.49711 * 174.59012 * 9 8 7 37 37 H 0.96996 * 119.99964 * 264.93471 * 12 10 9 38 38 H 0.97008 * 120.00050 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.47139 * 294.99949 * 23 21 10 40 40 H 1.09000 * 109.46814 * 55.00427 * 23 21 10 41 41 H 1.08999 * 109.47400 * 180.02562 * 24 23 21 42 42 H 1.09001 * 109.46756 * 300.00509 * 24 23 21 43 43 H 1.09005 * 109.46731 * 59.99946 * 24 23 21 44 44 H 1.08996 * 109.58796 * 113.79693 * 25 7 5 45 45 H 1.09008 * 109.58620 * 353.37477 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4365 2.4257 0.0006 6 8 0.3046 2.4745 -0.4414 7 7 2.0170 3.5387 0.4910 8 6 1.3515 4.8435 0.3748 9 6 1.2632 5.4776 1.7665 10 6 2.6618 5.5383 2.3847 11 1 2.6051 6.0115 3.3649 12 7 3.5459 6.3195 1.5161 13 6 3.5806 7.6842 1.6238 14 1 2.9564 8.1846 2.3494 15 6 4.4179 8.4244 0.8005 16 7 4.4508 9.7361 0.9037 17 14 5.4969 7.5589 -0.4550 18 1 4.7592 7.4310 -1.7374 19 1 5.8546 6.2079 0.0472 20 1 6.7348 8.3497 -0.6727 21 6 3.2172 4.1202 2.5345 22 1 2.5470 3.5312 3.1605 23 6 4.6015 4.1797 3.1834 24 6 5.1029 2.7584 3.4468 25 6 3.3277 3.4706 1.1515 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.0471 -0.9354 -0.0004 30 1 4.0420 1.0223 1.0202 31 1 4.0425 0.3335 -0.6211 32 1 4.0424 2.0993 -0.3970 33 1 1.9287 5.4905 -0.2857 34 1 0.3492 4.7076 -0.0314 35 1 0.6113 4.8759 2.3998 36 1 0.8588 6.4863 1.6817 37 1 4.1067 5.8701 0.8647 38 1 5.0362 10.2534 0.3286 39 1 5.2943 4.6913 2.5153 40 1 4.5377 4.7230 4.1262 41 1 6.0889 2.8008 3.9095 42 1 4.4101 2.2468 4.1149 43 1 5.1666 2.2151 2.5040 44 1 4.0660 4.0058 0.5544 45 1 3.6284 2.4285 1.2601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037821067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:35 Heat of formation + Delta-G solvation = 2.290759 kcal Electronic energy + Delta-G solvation = -23795.569547 eV Core-core repulsion = 20621.146245 eV Total energy + Delta-G solvation = -3174.423302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45151 -38.17598 -35.34619 -34.47336 -33.81170 -32.05523 -30.56486 -29.43476 -28.72386 -26.15764 -24.36701 -23.90475 -23.23298 -21.83201 -20.48886 -19.10209 -18.13325 -17.79142 -16.31300 -15.58813 -15.38161 -14.91393 -14.40625 -14.37351 -14.13074 -14.00130 -13.69447 -13.34628 -13.27436 -12.98140 -12.91853 -12.47891 -12.38208 -12.27639 -12.06885 -11.76607 -11.60617 -11.43340 -11.23184 -11.05741 -10.88081 -10.74012 -10.39775 -10.26137 -10.22690 -9.82366 -9.58432 -9.37090 -9.06499 -8.94177 -8.25447 -7.28031 -5.79263 -3.14236 1.40299 3.19088 3.30956 3.34392 3.35147 3.41962 4.54317 4.55405 4.73757 4.86063 5.05039 5.08290 5.20128 5.25022 5.31974 5.37287 5.44082 5.49730 5.54108 5.57314 5.68063 5.70186 5.73871 5.75267 5.78487 5.88657 5.96435 6.02819 6.09783 6.15417 6.21789 6.36699 6.39289 6.41169 6.45657 6.57358 6.63782 6.70858 6.75185 6.96264 7.68500 7.97513 8.36830 8.39894 9.18221 9.90721 10.10641 11.39338 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.005821 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.377728 B = 4809.006231 C = 5137.226129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.081 4.081 3 C -0.188 4.188 4 C -0.121 4.121 5 C 0.551 3.449 6 O -0.548 6.548 7 N -0.598 5.598 8 C 0.117 3.883 9 C -0.147 4.147 10 C 0.184 3.816 11 H 0.059 0.941 12 N -0.743 5.743 13 C -0.239 4.239 14 H 0.090 0.910 15 C 0.007 3.993 16 N -0.934 5.934 17 Si 0.878 3.122 18 H -0.285 1.285 19 H -0.278 1.278 20 H -0.291 1.291 21 C -0.108 4.108 22 H 0.071 0.929 23 C -0.113 4.113 24 C -0.154 4.154 25 C 0.083 3.917 26 H 0.090 0.910 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.359 0.641 38 H 0.259 0.741 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.066 0.934 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.711 -20.016 1.752 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.100 4.100 3 C -0.191 4.191 4 C -0.177 4.177 5 C 0.341 3.659 6 O -0.428 6.428 7 N -0.330 5.330 8 C -0.004 4.004 9 C -0.188 4.188 10 C 0.074 3.926 11 H 0.077 0.923 12 N -0.387 5.387 13 C -0.369 4.369 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.581 5.581 17 Si 0.708 3.292 18 H -0.212 1.212 19 H -0.205 1.205 20 H -0.217 1.217 21 C -0.128 4.128 22 H 0.090 0.910 23 C -0.151 4.151 24 C -0.211 4.211 25 C -0.040 4.040 26 H 0.108 0.892 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.327 -19.698 1.586 19.898 hybrid contribution 0.990 -0.310 -0.939 1.399 sum -1.337 -20.008 0.647 20.064 Atomic orbital electron populations 1.21016 0.92013 1.01159 1.04208 1.23485 0.97036 0.96480 0.93037 1.21486 0.96309 0.93454 1.07886 1.21181 0.91313 1.03352 1.01846 1.18438 0.85729 0.83821 0.77960 1.90723 1.18283 1.85636 1.48138 1.48046 1.20502 1.07758 1.56646 1.21573 0.98155 0.82164 0.98533 1.22475 0.99754 1.00788 0.95812 1.20196 0.88740 0.89265 0.94359 0.92320 1.42816 1.48590 1.04166 1.43093 1.19063 1.20192 0.80761 1.16902 0.89182 1.24624 0.99753 0.95129 0.99399 1.69688 1.42249 1.04107 1.42102 0.86664 0.81030 0.78848 0.82611 1.21183 1.20457 1.21748 1.21820 0.97556 0.97864 0.95539 0.91035 1.21448 0.96017 0.96218 1.01388 1.21879 1.00782 0.97477 1.00990 1.22744 0.84367 1.03401 0.93454 0.89195 0.92883 0.91283 0.86067 0.90349 0.91566 0.90714 0.90733 0.90061 0.93074 0.90384 0.80688 0.93094 0.91033 0.91461 0.92915 0.93066 0.93126 0.91609 0.87285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.53 36.01 0.31 -1.11 16 2 C -0.08 -0.85 9.98 -36.12 -0.36 -1.21 16 3 C -0.19 -2.30 5.64 -102.85 -0.58 -2.88 16 4 C -0.12 -1.17 7.97 36.00 0.29 -0.88 16 5 C 0.55 8.67 7.25 -12.66 -0.09 8.57 16 6 O -0.55 -9.98 13.19 5.27 0.07 -9.91 16 7 N -0.60 -9.44 2.97 -174.16 -0.52 -9.95 16 8 C 0.12 2.05 6.18 -3.71 -0.02 2.03 16 9 C -0.15 -2.55 5.78 -26.61 -0.15 -2.70 16 10 C 0.18 3.31 2.53 -67.89 -0.17 3.14 16 11 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 12 N -0.74 -16.18 3.53 -53.39 -0.19 -16.37 16 13 C -0.24 -6.39 10.41 -15.06 -0.16 -6.54 16 14 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 16 N -0.93 -28.72 13.97 55.49 0.78 -27.94 16 17 Si 0.88 21.53 27.74 -169.99 -4.71 16.81 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.29 6.52 56.52 0.37 -5.93 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 C -0.11 -1.57 2.13 -90.50 -0.19 -1.76 16 22 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 23 C -0.11 -1.55 5.19 -26.73 -0.14 -1.69 16 24 C -0.15 -1.64 9.68 37.16 0.36 -1.28 16 25 C 0.08 1.16 3.30 -3.71 -0.01 1.15 16 26 H 0.09 1.19 6.74 -51.93 -0.35 0.84 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 29 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 30 H 0.08 0.64 6.24 -51.93 -0.32 0.32 16 31 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.07 0.81 6.22 -51.93 -0.32 0.48 16 33 H 0.07 1.45 7.74 -51.93 -0.40 1.04 16 34 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.46 8.14 -51.92 -0.42 1.03 16 37 H 0.36 7.79 3.81 -40.82 -0.16 7.64 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.07 1.14 7.70 -51.93 -0.40 0.74 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.48 6.18 -51.93 -0.32 0.16 16 44 H 0.07 1.02 6.51 -51.93 -0.34 0.69 16 45 H 0.11 1.26 1.95 -52.67 -0.10 1.15 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -30.93 337.82 -7.81 -38.74 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -7.30 Total: 8.59 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -1.02 Total: -5.07 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.07 Total: -54.27 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.93 -7.81 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037821067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.034 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds