Wall clock time and date at job start Tue Mar 31 2020 03:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32991 * 120.00195 * 2 1 4 4 C 1.50692 * 120.00147 * 179.97438 * 3 2 1 5 5 C 1.47108 * 119.99758 * 0.02562 * 3 2 1 6 6 O 1.21613 * 119.99987 * 335.15878 * 5 3 2 7 7 N 1.34773 * 119.99830 * 155.15675 * 5 3 2 8 8 C 1.46924 * 120.62962 * 173.73758 * 7 5 3 9 9 C 1.53194 * 108.77552 * 126.41390 * 8 7 5 10 10 C 1.53035 * 109.31052 * 54.63826 * 9 8 7 11 11 H 1.08999 * 109.44942 * 178.61875 * 10 9 8 12 12 N 1.46503 * 109.46382 * 58.65482 * 10 9 8 13 13 C 1.36941 * 120.00196 * 84.92938 * 12 10 9 14 14 H 1.08003 * 119.99720 * 0.02562 * 13 12 10 15 15 C 1.38806 * 120.00274 * 180.02562 * 13 12 10 16 16 N 1.31614 * 120.00089 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99923 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47315 * 89.99566 * 17 15 13 19 19 H 1.48506 * 109.47056 * 329.99678 * 17 15 13 20 20 H 1.48494 * 109.47132 * 210.00050 * 17 15 13 21 21 C 1.53038 * 109.53961 * 298.63158 * 10 9 8 22 22 H 1.08998 * 109.50102 * 301.41939 * 21 10 9 23 23 C 1.52998 * 109.50076 * 181.34801 * 21 10 9 24 24 C 1.53001 * 109.47317 * 175.00094 * 23 21 10 25 25 C 1.46922 * 120.63432 * 353.76320 * 7 5 3 26 26 H 1.08997 * 109.46929 * 60.00120 * 1 2 3 27 27 H 1.09004 * 109.46690 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46825 * 299.99727 * 1 2 3 29 29 H 1.08006 * 119.99962 * 180.02562 * 2 1 3 30 30 H 1.09003 * 109.47599 * 277.24369 * 4 3 2 31 31 H 1.09000 * 109.47141 * 37.24656 * 4 3 2 32 32 H 1.09002 * 109.46841 * 157.24628 * 4 3 2 33 33 H 1.08994 * 109.59061 * 246.20426 * 8 7 5 34 34 H 1.09005 * 109.59028 * 6.48601 * 8 7 5 35 35 H 1.08999 * 109.49761 * 294.68443 * 9 8 7 36 36 H 1.09007 * 109.49711 * 174.59012 * 9 8 7 37 37 H 0.96996 * 119.99964 * 264.93471 * 12 10 9 38 38 H 0.97008 * 120.00050 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.47139 * 294.99949 * 23 21 10 40 40 H 1.09000 * 109.46814 * 55.00427 * 23 21 10 41 41 H 1.08999 * 109.47400 * 180.02562 * 24 23 21 42 42 H 1.09001 * 109.46756 * 300.00509 * 24 23 21 43 43 H 1.09005 * 109.46731 * 59.99946 * 24 23 21 44 44 H 1.08996 * 109.58796 * 113.79693 * 25 7 5 45 45 H 1.09008 * 109.58620 * 353.37477 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 3.6790 1.1517 0.0006 5 6 1.4365 2.4257 0.0006 6 8 0.3046 2.4745 -0.4414 7 7 2.0170 3.5387 0.4910 8 6 1.3515 4.8435 0.3748 9 6 1.2632 5.4776 1.7665 10 6 2.6618 5.5383 2.3847 11 1 2.6051 6.0115 3.3649 12 7 3.5459 6.3195 1.5161 13 6 3.5806 7.6842 1.6238 14 1 2.9564 8.1846 2.3494 15 6 4.4179 8.4244 0.8005 16 7 4.4508 9.7361 0.9037 17 14 5.4969 7.5589 -0.4550 18 1 4.7592 7.4310 -1.7374 19 1 5.8546 6.2079 0.0472 20 1 6.7348 8.3497 -0.6727 21 6 3.2172 4.1202 2.5345 22 1 2.5470 3.5312 3.1605 23 6 4.6015 4.1797 3.1834 24 6 5.1029 2.7584 3.4468 25 6 3.3277 3.4706 1.1515 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.0471 -0.9354 -0.0004 30 1 4.0420 1.0223 1.0202 31 1 4.0425 0.3335 -0.6211 32 1 4.0424 2.0993 -0.3970 33 1 1.9287 5.4905 -0.2857 34 1 0.3492 4.7076 -0.0314 35 1 0.6113 4.8759 2.3998 36 1 0.8588 6.4863 1.6817 37 1 4.1067 5.8701 0.8647 38 1 5.0362 10.2534 0.3286 39 1 5.2943 4.6913 2.5153 40 1 4.5377 4.7230 4.1262 41 1 6.0889 2.8008 3.9095 42 1 4.4101 2.2468 4.1149 43 1 5.1666 2.2151 2.5040 44 1 4.0660 4.0058 0.5544 45 1 3.6284 2.4285 1.2601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037821067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:34 Heat of formation + Delta-G solvation = -16.360510 kcal Electronic energy + Delta-G solvation = -23796.378326 eV Core-core repulsion = 20621.146245 eV Total energy + Delta-G solvation = -3175.232082 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67003 -39.49078 -36.36246 -35.97544 -35.11434 -33.78037 -32.02734 -30.65648 -29.90233 -27.33095 -25.55930 -25.21492 -24.77773 -23.04928 -21.65480 -20.41148 -19.92040 -19.26791 -17.55017 -16.82353 -16.53861 -16.47178 -15.96126 -15.60509 -15.29658 -15.10392 -15.05726 -14.70708 -14.42123 -14.27583 -14.02102 -13.95570 -13.46563 -13.32723 -13.26002 -12.98995 -12.95183 -12.69685 -12.54222 -12.39757 -12.18896 -12.12675 -12.00756 -11.85587 -11.52759 -11.47451 -11.08457 -10.90551 -10.53105 -9.97165 -9.54583 -9.24488 -7.99959 -5.31255 0.48594 1.33225 1.37614 1.44354 2.02097 2.20136 2.48054 3.31841 3.54527 3.60685 3.70489 3.94372 3.98905 4.06438 4.21452 4.29513 4.33349 4.39645 4.45918 4.53183 4.54065 4.65685 4.68963 4.80624 4.82734 4.91115 4.92364 4.97074 5.02430 5.08486 5.10095 5.16207 5.21568 5.26397 5.32513 5.43552 5.51996 5.53715 5.65795 5.70151 5.81778 6.23928 6.50074 7.10921 7.16950 7.87106 8.06466 9.22129 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.005821 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.377728 B = 4809.006231 C = 5137.226129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.060 4.060 3 C -0.209 4.209 4 C -0.120 4.120 5 C 0.542 3.458 6 O -0.582 6.582 7 N -0.601 5.601 8 C 0.124 3.876 9 C -0.139 4.139 10 C 0.177 3.823 11 H 0.047 0.953 12 N -0.739 5.739 13 C -0.216 4.216 14 H 0.057 0.943 15 C -0.061 4.061 16 N -0.986 5.986 17 Si 0.941 3.059 18 H -0.288 1.288 19 H -0.246 1.246 20 H -0.298 1.298 21 C -0.098 4.098 22 H 0.090 0.910 23 C -0.111 4.111 24 C -0.148 4.148 25 C 0.084 3.916 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.163 0.837 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.363 0.637 38 H 0.255 0.745 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.435 -24.561 1.915 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.079 4.079 3 C -0.212 4.212 4 C -0.176 4.176 5 C 0.334 3.666 6 O -0.465 6.465 7 N -0.331 5.331 8 C 0.001 3.999 9 C -0.179 4.179 10 C 0.069 3.931 11 H 0.065 0.935 12 N -0.383 5.383 13 C -0.348 4.348 14 H 0.075 0.925 15 C -0.252 4.252 16 N -0.637 5.637 17 Si 0.769 3.231 18 H -0.215 1.215 19 H -0.170 1.170 20 H -0.224 1.224 21 C -0.118 4.118 22 H 0.109 0.891 23 C -0.149 4.149 24 C -0.206 4.206 25 C -0.037 4.037 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.180 0.820 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.198 0.802 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.054 -24.311 1.776 24.399 hybrid contribution 0.416 1.079 -0.925 1.481 sum -0.639 -23.232 0.851 23.256 Atomic orbital electron populations 1.21003 0.93093 1.02349 1.02221 1.23852 0.96469 0.97537 0.90039 1.21518 0.97675 0.91726 1.10257 1.21202 0.89145 1.03717 1.03538 1.19194 0.85578 0.84899 0.76904 1.90712 1.20013 1.86274 1.49462 1.48090 1.21013 1.07011 1.57033 1.21295 0.97625 0.83215 0.97774 1.22338 0.99500 0.99887 0.96217 1.20417 0.88565 0.91260 0.92899 0.93522 1.42732 1.49277 1.02486 1.43805 1.19002 1.18061 0.82894 1.14802 0.92531 1.25350 1.02055 0.95708 1.02124 1.69870 1.43952 1.06032 1.43852 0.85616 0.78610 0.79163 0.79687 1.21465 1.16988 1.22443 1.21761 0.98353 0.95115 0.96580 0.89134 1.21405 0.94844 0.98488 1.00156 1.21841 1.01368 0.95017 1.02328 1.22933 0.83128 1.05309 0.92319 0.91743 0.90045 0.92851 0.81951 0.88273 0.89048 0.92078 0.93129 0.90810 0.91224 0.92704 0.80214 0.93601 0.93323 0.92448 0.92202 0.91612 0.91443 0.92908 0.83771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.53 71.24 0.61 -1.98 16 2 C -0.06 -1.00 9.98 24.52 0.24 -0.75 16 3 C -0.21 -4.33 5.64 -18.70 -0.11 -4.44 16 4 C -0.12 -1.73 7.97 71.23 0.57 -1.16 16 5 C 0.54 16.24 7.25 86.57 0.63 16.86 16 6 O -0.58 -21.12 13.19 -4.07 -0.05 -21.17 16 7 N -0.60 -18.17 2.97 -823.17 -2.45 -20.62 16 8 C 0.12 4.39 6.18 86.36 0.53 4.92 16 9 C -0.14 -4.86 5.78 30.67 0.18 -4.68 16 10 C 0.18 6.35 2.53 45.02 0.11 6.46 16 11 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 12 N -0.74 -32.41 3.53 -322.82 -1.14 -33.55 16 13 C -0.22 -11.93 10.41 84.03 0.87 -11.05 16 14 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 15 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 16 N -0.99 -63.02 13.97 21.65 0.30 -62.72 16 17 Si 0.94 44.95 27.74 68.60 1.90 46.85 16 18 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 19 H -0.25 -10.27 6.52 99.48 0.65 -9.62 16 20 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 21 C -0.10 -2.64 2.13 -10.72 -0.02 -2.67 16 22 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 23 C -0.11 -2.79 5.19 30.59 0.16 -2.63 16 24 C -0.15 -2.51 9.68 71.98 0.70 -1.81 16 25 C 0.08 2.15 3.30 86.36 0.29 2.44 16 26 H 0.06 1.64 6.74 -2.39 -0.02 1.63 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.23 7.90 -2.39 -0.02 1.21 16 29 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 30 H 0.10 1.00 6.24 -2.39 -0.01 0.99 16 31 H 0.09 0.91 8.12 -2.39 -0.02 0.89 16 32 H 0.06 1.08 6.22 -2.39 -0.01 1.06 16 33 H 0.05 2.02 7.74 -2.39 -0.02 2.00 16 34 H 0.07 2.70 7.00 -2.38 -0.02 2.69 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.36 15.47 3.81 -92.71 -0.35 15.12 16 38 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 39 H 0.05 1.45 7.70 -2.39 -0.02 1.43 16 40 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.07 0.92 6.18 -2.38 -0.01 0.90 16 44 H 0.05 1.51 6.51 -2.39 -0.02 1.50 16 45 H 0.15 2.69 1.95 -3.08 -0.01 2.68 16 Total: -1.00 -71.13 337.82 4.36 -66.77 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.56 Total: 28.01 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 5.23 Total: -3.59 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -3.28 Total: -116.89 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.05 Total: -21.17 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.90 Total: 46.85 kcal Total: -71.13 4.36 -66.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037821067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.414 kcal (2) G-P(sol) polarization free energy of solvation -71.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds