Wall clock time and date at job start Tue Mar 31 2020 03:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32991 * 119.99856 * 2 1 4 4 C 1.50692 * 120.00276 * 359.97438 * 3 2 1 5 5 C 1.47110 * 119.99686 * 180.02562 * 3 2 1 6 6 O 1.21622 * 119.99823 * 335.45799 * 5 3 2 7 7 N 1.34771 * 119.99966 * 155.46263 * 5 3 2 8 8 C 1.46933 * 120.62899 * 173.57359 * 7 5 3 9 9 C 1.53194 * 108.77555 * 126.40894 * 8 7 5 10 10 C 1.53041 * 109.30878 * 54.63359 * 9 8 7 11 11 H 1.09000 * 109.44512 * 178.61810 * 10 9 8 12 12 N 1.46502 * 109.45977 * 58.65763 * 10 9 8 13 13 C 1.36933 * 119.99886 * 84.92922 * 12 10 9 14 14 H 1.08003 * 120.00695 * 359.97438 * 13 12 10 15 15 C 1.38814 * 119.99833 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00415 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99822 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46984 * 90.00145 * 17 15 13 19 19 H 1.48496 * 109.47029 * 329.99992 * 17 15 13 20 20 H 1.48507 * 109.47110 * 209.99628 * 17 15 13 21 21 C 1.53032 * 109.54140 * 298.63103 * 10 9 8 22 22 H 1.08996 * 109.50069 * 301.41703 * 21 10 9 23 23 C 1.53002 * 109.50112 * 181.35159 * 21 10 9 24 24 C 1.52995 * 109.47556 * 175.00092 * 23 21 10 25 25 C 1.46927 * 120.63186 * 353.58849 * 7 5 3 26 26 H 1.09002 * 109.46942 * 60.00047 * 1 2 3 27 27 H 1.08995 * 109.47655 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47017 * 300.00273 * 1 2 3 29 29 H 1.08005 * 119.99369 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47599 * 277.17715 * 4 3 2 31 31 H 1.09000 * 109.47141 * 37.18001 * 4 3 2 32 32 H 1.09002 * 109.46841 * 157.17974 * 4 3 2 33 33 H 1.08998 * 109.58438 * 246.19817 * 8 7 5 34 34 H 1.08998 * 109.58425 * 6.48196 * 8 7 5 35 35 H 1.09003 * 109.49899 * 294.68590 * 9 8 7 36 36 H 1.09001 * 109.49793 * 174.58420 * 9 8 7 37 37 H 0.96994 * 119.99767 * 264.92718 * 12 10 9 38 38 H 0.96998 * 120.00216 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.46822 * 295.00338 * 23 21 10 40 40 H 1.09000 * 109.46840 * 54.99895 * 23 21 10 41 41 H 1.08998 * 109.47477 * 300.00208 * 24 23 21 42 42 H 1.09013 * 109.46953 * 59.99908 * 24 23 21 43 43 H 1.08992 * 109.47240 * 179.97438 * 24 23 21 44 44 H 1.08997 * 109.58030 * 113.80461 * 25 7 5 45 45 H 1.09001 * 109.58339 * 353.38030 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2512 0.1935 0.4365 7 7 4.3167 2.2135 -0.4853 8 6 5.7791 2.2905 -0.3655 9 6 6.3754 2.5370 -1.7549 10 6 5.7287 3.7803 -2.3698 11 1 6.1690 3.9720 -3.3484 12 7 5.9601 4.9335 -1.4963 13 6 7.1241 5.6473 -1.5987 14 1 7.8719 5.3601 -2.3232 15 6 7.3431 6.7402 -0.7714 16 7 8.4622 7.4262 -0.8694 17 14 6.0495 7.2375 0.4812 18 1 6.3038 6.5310 1.7625 19 1 4.7027 6.8724 -0.0267 20 1 6.1139 8.7044 0.7036 21 6 4.2235 3.5513 -2.5240 22 1 4.0509 2.6786 -3.1537 23 6 3.5832 4.7817 -3.1697 24 6 2.1025 4.5048 -3.4376 25 6 3.6028 3.3163 -1.1433 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.0469 -0.9354 0.0004 30 1 1.1260 2.7071 -1.0204 31 1 0.5275 2.3622 0.6201 32 1 2.0571 3.2451 0.3981 33 1 6.0485 3.1117 0.2987 34 1 6.1625 1.3533 0.0380 35 1 6.1825 1.6738 -2.3920 36 1 7.4508 2.6919 -1.6671 37 1 5.2887 5.1912 -0.8454 38 1 8.6150 8.1901 -0.2915 39 1 3.6775 5.6351 -2.4981 40 1 4.0876 5.0022 -4.1105 41 1 2.0081 3.6514 -4.1092 42 1 1.5981 4.2842 -2.4967 43 1 1.6463 5.3814 -3.8972 44 1 3.6948 4.2211 -0.5425 45 1 2.5505 3.0550 -1.2554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037821068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:39 Heat of formation + Delta-G solvation = -0.595022 kcal Electronic energy + Delta-G solvation = -23680.920061 eV Core-core repulsion = 20506.371623 eV Total energy + Delta-G solvation = -3174.548439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.41389 -38.08500 -35.83138 -34.38883 -33.86392 -32.01900 -30.41750 -29.11726 -28.65082 -26.84819 -24.79944 -23.92877 -23.18642 -21.34726 -20.36625 -18.80908 -18.21233 -17.80307 -16.54105 -16.16967 -15.32577 -14.85302 -14.60601 -14.30241 -14.11784 -13.88278 -13.76782 -13.42320 -13.24911 -13.03892 -12.87340 -12.67650 -12.46479 -12.29262 -12.23343 -11.69242 -11.47335 -11.45009 -11.25255 -11.05815 -10.88179 -10.75012 -10.40743 -10.27395 -10.23241 -9.93045 -9.61269 -9.42810 -9.16661 -8.94284 -8.27827 -7.28106 -5.79239 -3.14238 1.38165 3.16895 3.30852 3.33764 3.35069 3.41918 4.51091 4.55405 4.76748 4.84363 4.98444 5.03189 5.08776 5.22644 5.24518 5.34419 5.39392 5.41309 5.46330 5.51616 5.56962 5.61508 5.66964 5.71775 5.72878 5.79740 5.92624 5.97603 6.09300 6.14663 6.21358 6.27175 6.37967 6.38102 6.43967 6.56642 6.63612 6.70566 6.74983 6.95684 7.66770 7.97487 8.34974 8.39919 9.18196 9.90673 10.10621 11.39369 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.005660 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.106819 B = 4946.157568 C = 5214.395254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.181 4.181 4 C -0.124 4.124 5 C 0.551 3.449 6 O -0.554 6.554 7 N -0.597 5.597 8 C 0.117 3.883 9 C -0.148 4.148 10 C 0.184 3.816 11 H 0.059 0.941 12 N -0.743 5.743 13 C -0.240 4.240 14 H 0.091 0.909 15 C 0.007 3.993 16 N -0.934 5.934 17 Si 0.878 3.122 18 H -0.285 1.285 19 H -0.278 1.278 20 H -0.291 1.291 21 C -0.108 4.108 22 H 0.072 0.928 23 C -0.113 4.113 24 C -0.154 4.154 25 C 0.082 3.918 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.359 0.641 38 H 0.259 0.741 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.681 -10.806 -1.934 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.106 4.106 3 C -0.184 4.184 4 C -0.179 4.179 5 C 0.340 3.660 6 O -0.434 6.434 7 N -0.329 5.329 8 C -0.005 4.005 9 C -0.188 4.188 10 C 0.074 3.926 11 H 0.077 0.923 12 N -0.387 5.387 13 C -0.369 4.369 14 H 0.108 0.892 15 C -0.189 4.189 16 N -0.581 5.581 17 Si 0.708 3.292 18 H -0.212 1.212 19 H -0.205 1.205 20 H -0.217 1.217 21 C -0.128 4.128 22 H 0.090 0.910 23 C -0.151 4.151 24 C -0.211 4.211 25 C -0.040 4.040 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.193 0.807 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -17.101 -11.175 -1.770 20.505 hybrid contribution -0.629 0.603 0.972 1.305 sum -17.730 -10.572 -0.799 20.658 Atomic orbital electron populations 1.20950 0.92229 1.02807 1.02474 1.23447 0.96118 0.97639 0.93425 1.21444 0.93086 0.96596 1.07314 1.21226 1.00032 0.94801 1.01875 1.18445 0.87590 0.82073 0.77849 1.90751 1.70077 1.34056 1.48501 1.48016 1.08176 1.19860 1.56807 1.21589 0.77843 1.02434 0.98595 1.22479 1.01597 0.98974 0.95797 1.20196 0.91160 0.86879 0.94325 0.92289 1.42812 1.20535 1.32395 1.42917 1.19065 0.94217 1.06791 1.16869 0.89169 1.24628 0.96792 0.98089 0.99394 1.69686 1.24812 1.21658 1.41991 0.86666 0.81941 0.77963 0.82594 1.21174 1.20451 1.21744 1.21823 0.97104 0.98334 0.95551 0.91008 1.21448 0.94343 0.97869 1.01407 1.21878 0.97053 1.01212 1.00980 1.22757 0.98155 0.89534 0.93519 0.90888 0.91596 0.90827 0.85988 0.90191 0.91332 0.90744 0.90658 0.90064 0.93047 0.90342 0.80691 0.93089 0.91025 0.91446 0.93056 0.93141 0.92910 0.91552 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.90 9.00 36.01 0.32 -0.58 16 2 C -0.09 -0.92 9.81 -36.13 -0.35 -1.27 16 3 C -0.18 -2.23 5.65 -102.85 -0.58 -2.81 16 4 C -0.12 -1.18 7.36 36.00 0.27 -0.92 16 5 C 0.55 8.95 7.46 -12.66 -0.09 8.85 16 6 O -0.55 -10.77 15.90 5.26 0.08 -10.69 16 7 N -0.60 -9.57 2.97 -174.15 -0.52 -10.09 16 8 C 0.12 2.08 6.19 -3.71 -0.02 2.05 16 9 C -0.15 -2.57 5.78 -26.61 -0.15 -2.72 16 10 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 11 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 12 N -0.74 -16.20 3.53 -53.39 -0.19 -16.38 16 13 C -0.24 -6.40 10.41 -15.06 -0.16 -6.56 16 14 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 15 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 16 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 17 Si 0.88 21.52 27.73 -169.99 -4.71 16.81 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.28 6.52 56.52 0.37 -5.92 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 C -0.11 -1.57 2.13 -90.50 -0.19 -1.77 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 C -0.11 -1.55 5.19 -26.73 -0.14 -1.69 16 24 C -0.15 -1.62 9.67 37.16 0.36 -1.26 16 25 C 0.08 1.16 3.30 -3.71 -0.01 1.15 16 26 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.47 7.42 -51.93 -0.39 0.09 16 29 H 0.12 1.41 7.70 -52.48 -0.40 1.01 16 30 H 0.08 0.65 6.25 -51.93 -0.32 0.32 16 31 H 0.07 0.53 6.79 -51.93 -0.35 0.18 16 32 H 0.07 0.80 6.21 -51.93 -0.32 0.48 16 33 H 0.08 1.47 7.74 -51.93 -0.40 1.07 16 34 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.36 7.79 3.81 -40.82 -0.16 7.64 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.07 1.14 7.70 -51.93 -0.40 0.74 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.47 6.18 -51.92 -0.32 0.15 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 1.03 6.51 -51.93 -0.34 0.69 16 45 H 0.11 1.25 1.95 -52.79 -0.10 1.15 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -31.70 339.60 -7.73 -39.43 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.26 Total: 8.05 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.03 Total: -4.28 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.07 Total: -54.43 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.70 -7.73 -39.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037821068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.834 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds