Wall clock time and date at job start Tue Mar 31 2020 03:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32991 * 119.99856 * 2 1 4 4 C 1.50692 * 120.00276 * 359.97438 * 3 2 1 5 5 C 1.47110 * 119.99686 * 180.02562 * 3 2 1 6 6 O 1.21622 * 119.99823 * 335.45799 * 5 3 2 7 7 N 1.34771 * 119.99966 * 155.46263 * 5 3 2 8 8 C 1.46933 * 120.62899 * 173.57359 * 7 5 3 9 9 C 1.53194 * 108.77555 * 126.40894 * 8 7 5 10 10 C 1.53041 * 109.30878 * 54.63359 * 9 8 7 11 11 H 1.09000 * 109.44512 * 178.61810 * 10 9 8 12 12 N 1.46502 * 109.45977 * 58.65763 * 10 9 8 13 13 C 1.36933 * 119.99886 * 84.92922 * 12 10 9 14 14 H 1.08003 * 120.00695 * 359.97438 * 13 12 10 15 15 C 1.38814 * 119.99833 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00415 * 179.97438 * 15 13 12 17 17 Si 1.86806 * 119.99822 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46984 * 90.00145 * 17 15 13 19 19 H 1.48496 * 109.47029 * 329.99992 * 17 15 13 20 20 H 1.48507 * 109.47110 * 209.99628 * 17 15 13 21 21 C 1.53032 * 109.54140 * 298.63103 * 10 9 8 22 22 H 1.08996 * 109.50069 * 301.41703 * 21 10 9 23 23 C 1.53002 * 109.50112 * 181.35159 * 21 10 9 24 24 C 1.52995 * 109.47556 * 175.00092 * 23 21 10 25 25 C 1.46927 * 120.63186 * 353.58849 * 7 5 3 26 26 H 1.09002 * 109.46942 * 60.00047 * 1 2 3 27 27 H 1.08995 * 109.47655 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47017 * 300.00273 * 1 2 3 29 29 H 1.08005 * 119.99369 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47599 * 277.17715 * 4 3 2 31 31 H 1.09000 * 109.47141 * 37.18001 * 4 3 2 32 32 H 1.09002 * 109.46841 * 157.17974 * 4 3 2 33 33 H 1.08998 * 109.58438 * 246.19817 * 8 7 5 34 34 H 1.08998 * 109.58425 * 6.48196 * 8 7 5 35 35 H 1.09003 * 109.49899 * 294.68590 * 9 8 7 36 36 H 1.09001 * 109.49793 * 174.58420 * 9 8 7 37 37 H 0.96994 * 119.99767 * 264.92718 * 12 10 9 38 38 H 0.96998 * 120.00216 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.46822 * 295.00338 * 23 21 10 40 40 H 1.09000 * 109.46840 * 54.99895 * 23 21 10 41 41 H 1.08998 * 109.47477 * 300.00208 * 24 23 21 42 42 H 1.09013 * 109.46953 * 59.99908 * 24 23 21 43 43 H 1.08992 * 109.47240 * 179.97438 * 24 23 21 44 44 H 1.08997 * 109.58030 * 113.80461 * 25 7 5 45 45 H 1.09001 * 109.58339 * 353.38030 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2512 0.1935 0.4365 7 7 4.3167 2.2135 -0.4853 8 6 5.7791 2.2905 -0.3655 9 6 6.3754 2.5370 -1.7549 10 6 5.7287 3.7803 -2.3698 11 1 6.1690 3.9720 -3.3484 12 7 5.9601 4.9335 -1.4963 13 6 7.1241 5.6473 -1.5987 14 1 7.8719 5.3601 -2.3232 15 6 7.3431 6.7402 -0.7714 16 7 8.4622 7.4262 -0.8694 17 14 6.0495 7.2375 0.4812 18 1 6.3038 6.5310 1.7625 19 1 4.7027 6.8724 -0.0267 20 1 6.1139 8.7044 0.7036 21 6 4.2235 3.5513 -2.5240 22 1 4.0509 2.6786 -3.1537 23 6 3.5832 4.7817 -3.1697 24 6 2.1025 4.5048 -3.4376 25 6 3.6028 3.3163 -1.1433 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 2.0469 -0.9354 0.0004 30 1 1.1260 2.7071 -1.0204 31 1 0.5275 2.3622 0.6201 32 1 2.0571 3.2451 0.3981 33 1 6.0485 3.1117 0.2987 34 1 6.1625 1.3533 0.0380 35 1 6.1825 1.6738 -2.3920 36 1 7.4508 2.6919 -1.6671 37 1 5.2887 5.1912 -0.8454 38 1 8.6150 8.1901 -0.2915 39 1 3.6775 5.6351 -2.4981 40 1 4.0876 5.0022 -4.1105 41 1 2.0081 3.6514 -4.1092 42 1 1.5981 4.2842 -2.4967 43 1 1.6463 5.3814 -3.8972 44 1 3.6948 4.2211 -0.5425 45 1 2.5505 3.0550 -1.2554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037821068.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:38 Heat of formation + Delta-G solvation = -20.104927 kcal Electronic energy + Delta-G solvation = -23681.766074 eV Core-core repulsion = 20506.371623 eV Total energy + Delta-G solvation = -3175.394452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66355 -39.42918 -36.77961 -35.94995 -35.16040 -33.76761 -31.94853 -30.28058 -29.68336 -27.82983 -26.02975 -25.07556 -25.03746 -22.57457 -21.52008 -20.15087 -19.91146 -19.22191 -17.69659 -17.34688 -16.70482 -16.43403 -15.99826 -15.63450 -15.46119 -15.14108 -14.78850 -14.74184 -14.41104 -14.22208 -13.99600 -13.87497 -13.46523 -13.37241 -13.21041 -13.10053 -12.98846 -12.70947 -12.43358 -12.22636 -12.18901 -12.12585 -12.01064 -11.86096 -11.54745 -11.47571 -11.24321 -10.92197 -10.64787 -10.03765 -9.59463 -9.25211 -7.99871 -5.31292 0.44962 1.33351 1.37888 1.44624 1.97273 2.16793 2.48229 3.31810 3.50817 3.60080 3.69753 3.97165 3.98894 4.05378 4.20053 4.27718 4.30224 4.35451 4.44792 4.50981 4.52652 4.65077 4.66865 4.78340 4.87710 4.89158 4.92863 4.96024 5.07289 5.08943 5.09474 5.13704 5.18045 5.24187 5.32412 5.42771 5.48350 5.53341 5.65114 5.70805 5.81776 6.23959 6.45240 7.10757 7.10916 7.86956 8.06433 9.22209 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.005660 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.106819 B = 4946.157568 C = 5214.395254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.067 4.067 3 C -0.204 4.204 4 C -0.122 4.122 5 C 0.543 3.457 6 O -0.597 6.597 7 N -0.598 5.598 8 C 0.123 3.877 9 C -0.139 4.139 10 C 0.177 3.823 11 H 0.048 0.952 12 N -0.739 5.739 13 C -0.217 4.217 14 H 0.057 0.943 15 C -0.061 4.061 16 N -0.986 5.986 17 Si 0.941 3.059 18 H -0.288 1.288 19 H -0.245 1.245 20 H -0.297 1.297 21 C -0.099 4.099 22 H 0.091 0.909 23 C -0.110 4.110 24 C -0.149 4.149 25 C 0.084 3.916 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.364 0.636 38 H 0.255 0.745 39 H 0.048 0.952 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.302 -11.729 -2.152 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.087 4.087 3 C -0.207 4.207 4 C -0.178 4.178 5 C 0.336 3.664 6 O -0.480 6.480 7 N -0.329 5.329 8 C 0.000 4.000 9 C -0.180 4.180 10 C 0.069 3.931 11 H 0.066 0.934 12 N -0.383 5.383 13 C -0.348 4.348 14 H 0.075 0.925 15 C -0.252 4.252 16 N -0.637 5.637 17 Si 0.769 3.231 18 H -0.215 1.215 19 H -0.169 1.169 20 H -0.224 1.224 21 C -0.119 4.119 22 H 0.109 0.891 23 C -0.149 4.149 24 C -0.206 4.206 25 C -0.037 4.037 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.198 0.802 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.782 -12.130 -2.020 25.013 hybrid contribution 0.866 0.726 0.973 1.491 sum -20.917 -11.403 -1.046 23.846 Atomic orbital electron populations 1.21043 0.89005 1.04210 1.03888 1.23720 0.98281 0.96352 0.90343 1.21390 0.90453 0.98676 1.10216 1.21253 1.00295 0.92587 1.03636 1.19221 0.89463 0.81121 0.76633 1.90723 1.71386 1.35623 1.50317 1.48056 1.07191 1.20600 1.57018 1.21326 0.79757 1.01004 0.97951 1.22346 1.00152 0.99355 0.96119 1.20416 0.94330 0.85502 0.92884 0.93421 1.42725 1.18949 1.32969 1.43641 1.19005 0.94769 1.06256 1.14793 0.92516 1.25356 0.99060 0.98706 1.02108 1.69869 1.27423 1.22691 1.43730 0.85619 0.80923 0.76885 0.79666 1.21474 1.16907 1.22437 1.21769 0.93898 0.99640 0.96555 0.89106 1.21405 0.96948 0.96340 1.00181 1.21842 0.94138 1.02240 1.02346 1.22970 0.99851 0.88482 0.92423 0.88909 0.90441 0.89464 0.87741 0.87984 0.88843 0.92001 0.92903 0.90966 0.91227 0.92601 0.80200 0.93592 0.93275 0.92417 0.91602 0.91406 0.92170 0.92708 0.83676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 9.00 71.24 0.64 -0.52 16 2 C -0.07 -1.21 9.81 24.52 0.24 -0.97 16 3 C -0.20 -4.40 5.65 -18.70 -0.11 -4.51 16 4 C -0.12 -1.77 7.36 71.23 0.52 -1.24 16 5 C 0.54 17.00 7.46 86.57 0.65 17.65 16 6 O -0.60 -23.33 15.90 -4.10 -0.07 -23.40 16 7 N -0.60 -18.47 2.97 -823.15 -2.45 -20.92 16 8 C 0.12 4.41 6.19 86.36 0.53 4.94 16 9 C -0.14 -4.91 5.78 30.67 0.18 -4.73 16 10 C 0.18 6.35 2.53 45.02 0.11 6.47 16 11 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 12 N -0.74 -32.36 3.53 -322.82 -1.14 -33.50 16 13 C -0.22 -11.96 10.41 84.03 0.87 -11.08 16 14 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 15 C -0.06 -3.55 5.50 84.86 0.47 -3.09 16 16 N -0.99 -63.00 13.97 21.65 0.30 -62.70 16 17 Si 0.94 44.84 27.73 68.60 1.90 46.75 16 18 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 19 H -0.24 -10.18 6.52 99.48 0.65 -9.53 16 20 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 21 C -0.10 -2.65 2.13 -10.72 -0.02 -2.68 16 22 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 23 C -0.11 -2.76 5.19 30.59 0.16 -2.60 16 24 C -0.15 -2.46 9.67 71.98 0.70 -1.77 16 25 C 0.08 2.14 3.30 86.36 0.28 2.43 16 26 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.09 0.66 7.42 -2.39 -0.02 0.64 16 29 H 0.10 2.25 7.70 -2.91 -0.02 2.22 16 30 H 0.10 1.01 6.25 -2.39 -0.01 0.99 16 31 H 0.09 0.94 6.79 -2.39 -0.02 0.92 16 32 H 0.06 1.08 6.21 -2.39 -0.01 1.07 16 33 H 0.05 2.12 7.74 -2.39 -0.02 2.10 16 34 H 0.07 2.71 7.00 -2.39 -0.02 2.69 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.36 15.43 3.81 -92.71 -0.35 15.08 16 38 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 39 H 0.05 1.45 7.70 -2.38 -0.02 1.44 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.89 6.18 -2.38 -0.01 0.88 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.05 1.56 6.51 -2.39 -0.02 1.54 16 45 H 0.15 2.69 1.95 -3.19 -0.01 2.68 16 Total: -1.00 -72.80 339.60 4.35 -68.45 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.56 Total: 27.01 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 5.23 Total: -1.69 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -3.28 Total: -117.12 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.07 Total: -23.40 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.75 kcal Total: -72.80 4.35 -68.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037821068.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.349 kcal (2) G-P(sol) polarization free energy of solvation -72.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds