Wall clock time and date at job start Tue Mar 31 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32998 * 120.00180 * 2 1 4 4 C 1.50697 * 120.00180 * 180.02562 * 3 2 1 5 5 C 1.47102 * 119.99758 * 0.02562 * 3 2 1 6 6 O 1.21616 * 120.00288 * 99.07446 * 5 3 2 7 7 N 1.34781 * 119.99878 * 279.34761 * 5 3 2 8 8 C 1.46930 * 120.62964 * 4.27153 * 7 5 3 9 9 C 1.53189 * 108.77201 * 233.58389 * 8 7 5 10 10 C 1.53045 * 109.31205 * 305.36416 * 9 8 7 11 11 H 1.08993 * 109.45965 * 301.34510 * 10 9 8 12 12 N 1.46507 * 109.45708 * 181.38689 * 10 9 8 13 13 C 1.36938 * 119.99947 * 85.00095 * 12 10 9 14 14 H 1.07996 * 119.99906 * 359.97438 * 13 12 10 15 15 C 1.38809 * 120.00140 * 179.97438 * 13 12 10 16 16 N 1.31628 * 119.99854 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00178 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46763 * 60.00581 * 17 15 13 19 19 H 1.48506 * 109.46983 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47212 * 300.00405 * 17 15 13 21 21 C 1.53039 * 109.53872 * 61.36881 * 10 9 8 22 22 H 1.08993 * 109.49825 * 58.61610 * 21 10 9 23 23 C 1.53000 * 109.49716 * 178.68629 * 21 10 9 24 24 C 1.52996 * 109.47051 * 185.00011 * 23 21 10 25 25 C 1.46925 * 120.63209 * 183.98819 * 7 5 3 26 26 H 1.08997 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47176 * 299.99910 * 1 2 3 28 28 H 1.08997 * 109.47267 * 59.99750 * 1 2 3 29 29 H 1.07997 * 120.00379 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47478 * 275.01318 * 4 3 2 31 31 H 1.08997 * 109.47225 * 35.01633 * 4 3 2 32 32 H 1.08999 * 109.47144 * 155.01311 * 4 3 2 33 33 H 1.08993 * 109.58433 * 353.36805 * 8 7 5 34 34 H 1.08995 * 109.58725 * 113.65394 * 8 7 5 35 35 H 1.08999 * 109.49941 * 65.31520 * 9 8 7 36 36 H 1.08996 * 109.49912 * 185.41076 * 9 8 7 37 37 H 0.97000 * 119.99665 * 264.99680 * 12 10 9 38 38 H 0.96993 * 119.99823 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.46582 * 304.99534 * 23 21 10 40 40 H 1.08997 * 109.47365 * 64.99691 * 23 21 10 41 41 H 1.09003 * 109.47419 * 180.02562 * 24 23 21 42 42 H 1.09000 * 109.47282 * 299.99530 * 24 23 21 43 43 H 1.08997 * 109.47298 * 59.99638 * 24 23 21 44 44 H 1.09004 * 109.58256 * 246.20857 * 25 7 5 45 45 H 1.09007 * 109.58574 * 6.62608 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4365 2.4257 0.0006 6 8 1.2767 3.0352 1.0408 7 7 0.9349 2.9148 -1.1509 8 6 1.0329 2.1433 -2.3975 9 6 1.6854 3.0208 -3.4703 10 6 0.9011 4.3285 -3.6004 11 1 -0.1335 4.1070 -3.8620 12 7 1.5029 5.1562 -4.6488 13 6 1.1493 4.9668 -5.9581 14 1 0.4272 4.2070 -6.2179 15 6 1.7191 5.7513 -6.9514 16 7 2.5996 6.6771 -6.6348 17 14 1.2373 5.4924 -8.7375 18 1 -0.2220 5.7190 -8.8943 19 1 1.9822 6.4493 -9.5948 20 1 1.5689 4.1031 -9.1433 21 6 0.9402 5.0833 -2.2696 22 1 1.9758 5.2840 -1.9955 23 6 0.1837 6.4057 -2.4103 24 6 0.3282 7.2156 -1.1203 25 6 0.2742 4.2267 -1.1821 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.0470 -0.9352 -0.0004 30 1 4.0428 1.0617 1.0230 31 1 4.0421 0.3103 -0.5906 32 1 4.0421 2.0833 -0.4346 33 1 1.6429 1.2556 -2.2308 34 1 0.0359 1.8458 -2.7224 35 1 2.7141 3.2404 -3.1845 36 1 1.6770 2.4950 -4.4250 37 1 2.1518 5.8385 -4.4154 38 1 2.9980 7.2250 -7.3290 39 1 0.5966 6.9736 -3.2440 40 1 -0.8711 6.2030 -2.5957 41 1 -0.2111 8.1576 -1.2202 42 1 -0.0847 6.6478 -0.2865 43 1 1.3830 7.4183 -0.9349 44 1 -0.7836 4.0977 -1.4113 45 1 0.3835 4.7141 -0.2132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037821070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:43 Heat of formation + Delta-G solvation = -25.833006 kcal Electronic energy + Delta-G solvation = -23204.731009 eV Core-core repulsion = 20029.088169 eV Total energy + Delta-G solvation = -3175.642840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.29400 -37.88339 -35.49453 -34.51462 -33.69331 -31.70079 -30.34911 -29.49385 -28.71145 -25.66909 -24.54241 -23.86430 -23.02776 -21.52948 -20.77654 -19.57485 -18.05623 -17.09171 -16.52402 -15.74287 -15.46988 -14.93268 -14.28869 -14.17638 -14.01053 -13.69300 -13.62337 -13.29808 -13.18355 -12.98345 -12.93305 -12.57097 -12.53134 -12.05804 -11.92609 -11.80466 -11.64540 -11.54249 -11.28670 -10.92428 -10.85789 -10.69855 -10.34606 -10.24071 -10.15863 -9.76925 -9.67601 -9.59748 -9.01675 -8.87484 -8.45073 -6.97394 -5.78607 -3.07323 1.68102 2.68058 3.20702 3.41597 3.46519 3.47411 4.49476 4.56560 4.75735 5.01013 5.08523 5.22133 5.26837 5.32174 5.37936 5.42966 5.46740 5.54096 5.56427 5.58039 5.61544 5.69184 5.69740 5.76754 5.88286 5.89732 6.03166 6.13262 6.16213 6.24823 6.33613 6.37137 6.40320 6.46404 6.47418 6.58991 6.69180 6.83418 6.96111 7.06037 7.53598 7.66912 8.24681 8.39635 9.51017 10.08495 10.43508 11.43763 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.004799 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.664179 B = 5833.326204 C = 6610.113355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C -0.158 4.158 4 C -0.104 4.104 5 C 0.558 3.442 6 O -0.548 6.548 7 N -0.600 5.600 8 C 0.107 3.893 9 C -0.151 4.151 10 C 0.184 3.816 11 H 0.047 0.953 12 N -0.720 5.720 13 C -0.239 4.239 14 H 0.069 0.931 15 C -0.011 4.011 16 N -0.932 5.932 17 Si 0.905 3.095 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.103 4.103 22 H 0.069 0.931 23 C -0.112 4.112 24 C -0.153 4.153 25 C 0.118 3.882 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.084 0.916 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.065 0.935 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 -11.043 12.272 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C -0.161 4.161 4 C -0.161 4.161 5 C 0.346 3.654 6 O -0.427 6.427 7 N -0.331 5.331 8 C -0.016 4.016 9 C -0.192 4.192 10 C 0.073 3.927 11 H 0.065 0.935 12 N -0.360 5.360 13 C -0.370 4.370 14 H 0.087 0.913 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.736 3.264 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.214 1.214 21 C -0.124 4.124 22 H 0.088 0.912 23 C -0.150 4.150 24 C -0.210 4.210 25 C -0.004 4.004 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.083 -10.728 12.622 16.850 hybrid contribution 0.096 0.008 -1.112 1.116 sum -2.988 -10.721 11.510 16.011 Atomic orbital electron populations 1.20987 0.92788 1.02715 1.02762 1.23264 0.96300 0.96745 0.98112 1.21494 0.97045 0.93119 1.04478 1.20658 0.89763 1.03133 1.02555 1.18526 0.78258 0.85233 0.83373 1.90773 1.59790 1.60658 1.31448 1.48181 1.56986 1.19571 1.08409 1.21869 1.01114 0.94666 0.83934 1.22675 1.00445 0.98673 0.97386 1.20186 0.95605 0.89383 0.87504 0.93477 1.42402 1.50597 1.40957 1.02065 1.19165 1.19527 1.14859 0.83442 0.91322 1.24717 0.99503 0.98679 0.97862 1.69650 1.31970 1.24186 1.32220 0.86308 0.77730 0.77162 0.85208 1.21316 1.21756 1.21355 1.21855 0.99894 0.95200 0.95402 0.91221 1.21452 1.00064 0.95289 0.98186 1.21843 1.01454 0.99694 0.98007 1.21854 0.95729 0.82212 1.00627 0.91521 0.91324 0.90989 0.85894 0.90913 0.90947 0.91480 0.90248 0.91647 0.92191 0.90629 0.78209 0.93479 0.89778 0.92471 0.93167 0.93238 0.93002 0.91670 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.15 36.00 0.33 -0.97 16 2 C -0.13 -1.24 9.30 -36.13 -0.34 -1.58 16 3 C -0.16 -1.92 4.03 -102.85 -0.41 -2.33 16 4 C -0.10 -1.07 10.02 36.00 0.36 -0.71 16 5 C 0.56 8.46 5.90 -12.66 -0.07 8.39 16 6 O -0.55 -10.16 16.53 5.26 0.09 -10.07 16 7 N -0.60 -8.62 2.94 -173.90 -0.51 -9.13 16 8 C 0.11 1.42 5.14 -3.71 -0.02 1.40 16 9 C -0.15 -2.49 5.66 -26.61 -0.15 -2.64 16 10 C 0.18 3.42 2.19 -67.88 -0.15 3.27 16 11 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 12 N -0.72 -17.00 4.33 -53.38 -0.23 -17.23 16 13 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 14 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 15 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 16 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 17 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.10 -1.70 1.94 -90.28 -0.17 -1.87 16 22 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 23 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 24 C -0.15 -2.14 9.68 37.16 0.36 -1.78 16 25 C 0.12 1.75 5.34 -3.49 -0.02 1.73 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 28 H 0.07 0.72 6.70 -51.93 -0.35 0.37 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.08 0.93 5.91 -51.93 -0.31 0.63 16 34 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.38 9.83 7.51 -40.82 -0.31 9.53 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.08 1.63 7.22 -51.92 -0.37 1.25 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.09 1.40 5.76 -51.93 -0.30 1.10 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -30.40 354.43 -8.14 -38.54 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.85 Total: 8.37 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.67 Total: -5.94 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.02 Total: -53.05 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.40 -8.14 -38.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037821070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.707 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds