Wall clock time and date at job start Tue Mar 31 2020 03:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32998 * 120.00180 * 2 1 4 4 C 1.50697 * 120.00180 * 180.02562 * 3 2 1 5 5 C 1.47102 * 119.99758 * 0.02562 * 3 2 1 6 6 O 1.21616 * 120.00288 * 99.07446 * 5 3 2 7 7 N 1.34781 * 119.99878 * 279.34761 * 5 3 2 8 8 C 1.46930 * 120.62964 * 4.27153 * 7 5 3 9 9 C 1.53189 * 108.77201 * 233.58389 * 8 7 5 10 10 C 1.53045 * 109.31205 * 305.36416 * 9 8 7 11 11 H 1.08993 * 109.45965 * 301.34510 * 10 9 8 12 12 N 1.46507 * 109.45708 * 181.38689 * 10 9 8 13 13 C 1.36938 * 119.99947 * 85.00095 * 12 10 9 14 14 H 1.07996 * 119.99906 * 359.97438 * 13 12 10 15 15 C 1.38809 * 120.00140 * 179.97438 * 13 12 10 16 16 N 1.31628 * 119.99854 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00178 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46763 * 60.00581 * 17 15 13 19 19 H 1.48506 * 109.46983 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47212 * 300.00405 * 17 15 13 21 21 C 1.53039 * 109.53872 * 61.36881 * 10 9 8 22 22 H 1.08993 * 109.49825 * 58.61610 * 21 10 9 23 23 C 1.53000 * 109.49716 * 178.68629 * 21 10 9 24 24 C 1.52996 * 109.47051 * 185.00011 * 23 21 10 25 25 C 1.46925 * 120.63209 * 183.98819 * 7 5 3 26 26 H 1.08997 * 109.46940 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47176 * 299.99910 * 1 2 3 28 28 H 1.08997 * 109.47267 * 59.99750 * 1 2 3 29 29 H 1.07997 * 120.00379 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47478 * 275.01318 * 4 3 2 31 31 H 1.08997 * 109.47225 * 35.01633 * 4 3 2 32 32 H 1.08999 * 109.47144 * 155.01311 * 4 3 2 33 33 H 1.08993 * 109.58433 * 353.36805 * 8 7 5 34 34 H 1.08995 * 109.58725 * 113.65394 * 8 7 5 35 35 H 1.08999 * 109.49941 * 65.31520 * 9 8 7 36 36 H 1.08996 * 109.49912 * 185.41076 * 9 8 7 37 37 H 0.97000 * 119.99665 * 264.99680 * 12 10 9 38 38 H 0.96993 * 119.99823 * 179.97438 * 16 15 13 39 39 H 1.09007 * 109.46582 * 304.99534 * 23 21 10 40 40 H 1.08997 * 109.47365 * 64.99691 * 23 21 10 41 41 H 1.09003 * 109.47419 * 180.02562 * 24 23 21 42 42 H 1.09000 * 109.47282 * 299.99530 * 24 23 21 43 43 H 1.08997 * 109.47298 * 59.99638 * 24 23 21 44 44 H 1.09004 * 109.58256 * 246.20857 * 25 7 5 45 45 H 1.09007 * 109.58574 * 6.62608 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4365 2.4257 0.0006 6 8 1.2767 3.0352 1.0408 7 7 0.9349 2.9148 -1.1509 8 6 1.0329 2.1433 -2.3975 9 6 1.6854 3.0208 -3.4703 10 6 0.9011 4.3285 -3.6004 11 1 -0.1335 4.1070 -3.8620 12 7 1.5029 5.1562 -4.6488 13 6 1.1493 4.9668 -5.9581 14 1 0.4272 4.2070 -6.2179 15 6 1.7191 5.7513 -6.9514 16 7 2.5996 6.6771 -6.6348 17 14 1.2373 5.4924 -8.7375 18 1 -0.2220 5.7190 -8.8943 19 1 1.9822 6.4493 -9.5948 20 1 1.5689 4.1031 -9.1433 21 6 0.9402 5.0833 -2.2696 22 1 1.9758 5.2840 -1.9955 23 6 0.1837 6.4057 -2.4103 24 6 0.3282 7.2156 -1.1203 25 6 0.2742 4.2267 -1.1821 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.0470 -0.9352 -0.0004 30 1 4.0428 1.0617 1.0230 31 1 4.0421 0.3103 -0.5906 32 1 4.0421 2.0833 -0.4346 33 1 1.6429 1.2556 -2.2308 34 1 0.0359 1.8458 -2.7224 35 1 2.7141 3.2404 -3.1845 36 1 1.6770 2.4950 -4.4250 37 1 2.1518 5.8385 -4.4154 38 1 2.9980 7.2250 -7.3290 39 1 0.5966 6.9736 -3.2440 40 1 -0.8711 6.2030 -2.5957 41 1 -0.2111 8.1576 -1.2202 42 1 -0.0847 6.6478 -0.2865 43 1 1.3830 7.4183 -0.9349 44 1 -0.7836 4.0977 -1.4113 45 1 0.3835 4.7141 -0.2132 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037821070.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:42 Heat of formation + Delta-G solvation = -43.449200 kcal Electronic energy + Delta-G solvation = -23205.494904 eV Core-core repulsion = 20029.088169 eV Total energy + Delta-G solvation = -3176.406735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.48857 -39.24268 -36.52099 -36.01994 -35.11779 -33.43848 -31.12338 -31.06045 -30.07637 -27.04647 -25.68848 -25.14613 -24.52324 -22.72493 -22.12624 -20.98429 -19.29528 -18.94062 -17.71486 -16.88703 -16.67488 -16.48442 -15.66620 -15.57257 -15.28187 -15.10238 -14.74607 -14.62471 -14.47507 -14.24192 -13.84419 -13.72348 -13.65533 -13.33243 -13.09996 -13.02007 -12.79984 -12.72152 -12.58990 -12.54329 -12.43123 -12.20380 -12.07017 -11.83907 -11.58441 -11.52922 -11.10682 -10.92243 -10.77683 -9.82461 -9.69558 -8.94677 -7.89398 -5.17027 0.84438 1.49667 1.51638 1.52731 1.57556 2.08643 2.59359 3.43329 3.50146 3.76747 3.79677 3.96461 4.01672 4.07238 4.23784 4.32169 4.34856 4.40429 4.46507 4.53979 4.62774 4.67208 4.74768 4.78383 4.79968 4.80936 4.83375 4.90032 4.98937 5.02472 5.06256 5.13871 5.15218 5.27876 5.36507 5.45842 5.50993 5.52179 5.58235 5.65591 5.66714 6.31445 6.38213 7.08427 7.38350 8.14216 8.37816 9.33946 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019324 B = 0.004799 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.664179 B = 5833.326204 C = 6610.113355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C -0.190 4.190 4 C -0.100 4.100 5 C 0.556 3.444 6 O -0.589 6.589 7 N -0.600 5.600 8 C 0.117 3.883 9 C -0.141 4.141 10 C 0.180 3.820 11 H 0.048 0.952 12 N -0.730 5.730 13 C -0.231 4.231 14 H 0.078 0.922 15 C -0.075 4.075 16 N -0.971 5.971 17 Si 0.967 3.033 18 H -0.279 1.279 19 H -0.301 1.301 20 H -0.278 1.278 21 C -0.092 4.092 22 H 0.050 0.950 23 C -0.107 4.107 24 C -0.146 4.146 25 C 0.124 3.876 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.156 0.844 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.370 0.630 38 H 0.248 0.752 39 H 0.047 0.953 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 -13.729 12.669 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.193 4.193 4 C -0.157 4.157 5 C 0.346 3.654 6 O -0.470 6.470 7 N -0.331 5.331 8 C -0.005 4.005 9 C -0.182 4.182 10 C 0.071 3.929 11 H 0.066 0.934 12 N -0.369 5.369 13 C -0.363 4.363 14 H 0.095 0.905 15 C -0.267 4.267 16 N -0.622 5.622 17 Si 0.797 3.203 18 H -0.206 1.206 19 H -0.228 1.228 20 H -0.204 1.204 21 C -0.112 4.112 22 H 0.069 0.931 23 C -0.145 4.145 24 C -0.203 4.203 25 C 0.001 3.999 26 H 0.110 0.890 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.173 0.827 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.202 0.798 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.246 -13.468 13.030 19.215 hybrid contribution 0.389 0.796 -1.163 1.462 sum -3.857 -12.672 11.867 17.784 Atomic orbital electron populations 1.21060 0.92655 1.04146 1.01816 1.23628 0.96536 0.97110 0.94504 1.21503 0.97714 0.92154 1.07923 1.20660 0.88716 1.03182 1.03134 1.19097 0.77588 0.86035 0.82676 1.90744 1.61226 1.62201 1.32839 1.48246 1.56652 1.19338 1.08820 1.21862 1.02254 0.94270 0.82138 1.22466 0.99501 0.97864 0.98348 1.20406 0.95395 0.89931 0.87155 0.93389 1.42572 1.50490 1.41433 1.02430 1.19558 1.18339 1.13821 0.84590 0.90451 1.25468 1.00331 0.99169 1.01721 1.69818 1.33858 1.25676 1.32855 0.85300 0.77408 0.77002 0.80586 1.20558 1.22765 1.20409 1.21697 0.99094 0.95525 0.94848 0.93143 1.21356 1.00067 0.95031 0.98052 1.21777 1.01355 1.00072 0.97097 1.21740 0.96404 0.82368 0.99341 0.88959 0.92908 0.91241 0.82690 0.90583 0.88435 0.93414 0.88001 0.89666 0.93724 0.91374 0.79830 0.94318 0.93385 0.91633 0.92009 0.91888 0.93672 0.89984 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.15 71.24 0.65 -1.56 16 2 C -0.10 -1.60 9.30 24.52 0.23 -1.37 16 3 C -0.19 -4.17 4.03 -18.70 -0.08 -4.24 16 4 C -0.10 -1.87 10.02 71.24 0.71 -1.16 16 5 C 0.56 16.24 5.90 86.57 0.51 16.75 16 6 O -0.59 -21.69 16.53 -4.08 -0.07 -21.76 16 7 N -0.60 -16.39 2.94 -822.33 -2.42 -18.81 16 8 C 0.12 2.83 5.14 86.36 0.44 3.27 16 9 C -0.14 -4.53 5.66 30.67 0.17 -4.36 16 10 C 0.18 6.65 2.19 45.02 0.10 6.75 16 11 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 12 N -0.73 -35.17 4.33 -322.81 -1.40 -36.57 16 13 C -0.23 -12.26 9.93 84.03 0.83 -11.42 16 14 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 15 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 16 N -0.97 -58.72 13.06 21.65 0.28 -58.44 16 17 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C -0.09 -3.02 1.94 -10.57 -0.02 -3.04 16 22 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 23 C -0.11 -3.50 5.31 30.59 0.16 -3.34 16 24 C -0.15 -4.05 9.68 71.98 0.70 -3.35 16 25 C 0.12 3.56 5.34 86.51 0.46 4.02 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 1.04 8.09 -2.38 -0.02 1.02 16 28 H 0.07 1.16 6.70 -2.39 -0.02 1.14 16 29 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.29 8.10 -2.39 -0.02 1.27 16 32 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 33 H 0.10 2.06 5.91 -2.39 -0.01 2.05 16 34 H 0.09 1.78 7.97 -2.39 -0.02 1.77 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.37 19.74 7.51 -92.71 -0.70 19.04 16 38 H 0.25 14.73 8.31 -92.71 -0.77 13.95 16 39 H 0.05 1.93 7.22 -2.38 -0.02 1.91 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.58 6.70 -2.39 -0.02 1.57 16 43 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.08 2.55 5.76 -2.38 -0.01 2.54 16 Total: -1.00 -67.19 354.43 4.03 -63.16 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.26 Total: 31.99 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 5.35 Total: -6.79 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -3.53 Total: -113.82 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.07 Total: -21.76 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -67.19 4.03 -63.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037821070.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.713 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds