Wall clock time and date at job start Tue Mar 31 2020 02:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46906 * 2 1 4 4 H 1.08993 * 109.49695 * 304.99853 * 3 2 1 5 5 C 1.53192 * 109.49670 * 65.06886 * 3 2 1 6 6 N 1.46924 * 108.77183 * 174.61661 * 5 3 2 7 7 C 1.34775 * 120.63377 * 126.37007 * 6 5 3 8 8 O 1.21275 * 120.00575 * 175.84399 * 7 6 5 9 9 C 1.50710 * 119.99656 * 355.84651 * 7 6 5 10 10 C 1.53000 * 115.54753 * 66.36896 * 9 7 6 11 11 C 1.52995 * 117.49614 * 280.66523 * 9 7 6 12 12 C 1.52991 * 117.49548 * 212.04157 * 9 7 6 13 13 C 1.46927 * 118.73969 * 306.38781 * 6 5 3 14 14 C 1.53193 * 108.77642 * 53.60999 * 13 6 5 15 15 C 1.53039 * 109.31351 * 305.36613 * 14 13 6 16 16 H 1.08997 * 109.46380 * 181.38228 * 15 14 13 17 17 N 1.46498 * 109.46072 * 301.34658 * 15 14 13 18 18 C 1.36943 * 119.99567 * 275.06956 * 17 15 14 19 19 H 1.07997 * 120.00216 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99972 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99719 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00196 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47420 * 89.99222 * 22 20 18 24 24 H 1.48497 * 109.47122 * 210.00019 * 22 20 18 25 25 H 1.48504 * 109.46908 * 329.99562 * 22 20 18 26 26 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46721 * 300.00030 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99841 * 1 2 3 29 29 H 1.09001 * 109.46721 * 239.99970 * 2 1 3 30 30 H 1.08991 * 109.46879 * 120.00136 * 2 1 3 31 31 H 1.09000 * 109.58449 * 294.39944 * 5 3 2 32 32 H 1.08997 * 109.58628 * 54.68254 * 5 3 2 33 33 H 1.09001 * 109.47119 * 54.65628 * 10 9 7 34 34 H 1.09000 * 109.47012 * 174.65257 * 10 9 7 35 35 H 1.09001 * 109.47717 * 294.65341 * 10 9 7 36 36 H 1.09003 * 117.50099 * 359.97438 * 11 9 7 37 37 H 1.09000 * 117.49907 * 145.01874 * 11 9 7 38 38 H 1.09004 * 117.49525 * 214.97770 * 12 9 7 39 39 H 1.08999 * 117.50404 * 359.97438 * 12 9 7 40 40 H 1.09001 * 109.58762 * 173.39928 * 13 6 5 41 41 H 1.09007 * 109.58673 * 293.68092 * 13 6 5 42 42 H 1.09001 * 109.49476 * 65.31589 * 14 13 6 43 43 H 1.08997 * 109.49855 * 185.41453 * 14 13 6 44 44 H 0.96996 * 120.00668 * 95.06444 * 17 15 14 45 45 H 0.97003 * 119.99705 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9819 -0.8416 5 6 1.6365 2.1275 1.3095 6 7 2.2424 3.4654 1.3495 7 6 1.4822 4.5574 1.5643 8 8 2.0029 5.6475 1.6703 9 6 -0.0150 4.4237 1.6730 10 6 -0.5215 3.6473 2.8902 11 6 -0.8089 4.2944 0.3715 12 6 -0.8665 5.5940 1.1770 13 6 3.6928 3.5903 1.1505 14 6 4.0733 2.8889 -0.1572 15 6 3.5655 1.4456 -0.1237 16 1 3.8563 0.9369 -1.0428 17 7 4.1497 0.7492 1.0251 18 6 5.3880 0.1740 0.9198 19 1 5.9337 0.2335 -0.0103 20 6 5.9414 -0.4864 2.0081 21 7 5.2761 -0.5593 3.1415 22 14 7.6302 -1.2716 1.8643 23 1 8.6698 -0.2840 2.2504 24 1 7.7069 -2.4493 2.7656 25 1 7.8564 -1.7058 0.4623 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.5511 2.2163 1.3560 32 1 1.9914 1.5378 2.1547 33 1 -0.1129 4.0893 3.7989 34 1 -1.6102 3.6919 2.9222 35 1 -0.2025 2.6076 2.8166 36 1 -0.2484 4.3065 -0.5633 37 1 -1.6924 3.6561 0.3822 38 1 -1.7879 5.8106 1.7176 39 1 -0.3439 6.4608 0.7725 40 1 3.9641 4.6444 1.0922 41 1 4.2176 3.1235 1.9841 42 1 3.6197 3.4148 -0.9973 43 1 5.1575 2.8906 -0.2688 44 1 3.6595 0.6955 1.8604 45 1 5.6627 -1.0211 3.9019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037848770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:32 Heat of formation + Delta-G solvation = -8.075712 kcal Electronic energy + Delta-G solvation = -23803.047349 eV Core-core repulsion = 20628.174523 eV Total energy + Delta-G solvation = -3174.872826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.39073 -38.21421 -36.59772 -34.19150 -33.75568 -31.84268 -29.71081 -28.61658 -28.40675 -25.36697 -24.02117 -23.62300 -22.52901 -22.16661 -20.50573 -19.17098 -18.03767 -17.34872 -16.63910 -15.89669 -15.34779 -14.77154 -14.43607 -14.28846 -14.03351 -13.97126 -13.44523 -13.29071 -13.20468 -12.84539 -12.53456 -12.40663 -12.22865 -12.13232 -11.69115 -11.61830 -11.46302 -11.08320 -10.93620 -10.79288 -10.66587 -10.57595 -10.33987 -10.26829 -10.18584 -10.00797 -9.81634 -9.60260 -9.32854 -8.91171 -8.17329 -6.96994 -5.79297 -3.07194 2.81093 3.24425 3.42068 3.47934 3.48925 3.69418 4.51257 4.57852 4.65924 4.77038 4.93225 5.07561 5.23112 5.27977 5.50176 5.53120 5.54625 5.56333 5.61195 5.66242 5.68941 5.69973 5.79474 5.82968 5.84943 5.88151 6.02505 6.03543 6.10247 6.12817 6.23391 6.32281 6.35552 6.48034 6.55747 6.64314 6.74238 6.80417 6.93462 7.04641 7.69048 7.78407 8.39521 8.46374 9.51264 10.07738 10.42797 11.43305 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.005316 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.167331 B = 5266.067194 C = 5743.957898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.109 3.891 6 N -0.594 5.594 7 C 0.547 3.453 8 O -0.552 6.552 9 C -0.156 4.156 10 C -0.117 4.117 11 C -0.159 4.159 12 C -0.147 4.147 13 C 0.119 3.881 14 C -0.148 4.148 15 C 0.178 3.822 16 H 0.050 0.950 17 N -0.718 5.718 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.293 1.293 25 H -0.283 1.283 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.084 5.866 -5.244 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.013 4.013 6 N -0.325 5.325 7 C 0.334 3.666 8 O -0.430 6.430 9 C -0.159 4.159 10 C -0.174 4.174 11 C -0.196 4.196 12 C -0.185 4.185 13 C -0.003 4.003 14 C -0.189 4.189 15 C 0.068 3.932 16 H 0.068 0.932 17 N -0.360 5.360 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.582 5.582 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.209 1.209 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.617 6.342 -5.224 15.904 hybrid contribution 0.943 -0.560 0.270 1.129 sum -12.674 5.782 -4.954 14.786 Atomic orbital electron populations 1.21853 0.96894 1.01120 1.01087 1.21435 0.94160 0.95841 1.03522 1.21750 0.97618 0.96022 0.96915 0.91569 1.22008 0.98041 0.82458 0.98818 1.48037 1.08547 1.06429 1.69461 1.19490 0.87187 0.83785 0.76100 1.90647 1.74269 1.26725 1.51378 1.21378 0.91330 1.05097 0.98128 1.21465 1.00792 0.99876 0.95235 1.23067 1.01621 1.00743 0.94208 1.22993 1.00526 0.92466 1.02489 1.21571 0.78668 1.00873 0.99170 1.22516 1.01732 0.98959 0.95710 1.20229 0.89664 0.90743 0.92578 0.93195 1.42450 1.19010 1.64013 1.10548 1.19220 0.93617 1.26826 0.97099 0.91283 1.24687 0.98510 1.01525 0.96003 1.69644 1.38069 1.48182 1.02267 0.86240 0.84483 0.78725 0.77024 1.21834 1.21901 1.20862 0.93116 0.93019 0.93317 0.91971 0.90441 0.89564 0.90641 0.91663 0.91628 0.90950 0.88519 0.87941 0.88158 0.88097 0.90586 0.90080 0.93525 0.90848 0.78163 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.67 37.16 0.36 -1.37 16 2 C -0.11 -1.62 5.19 -26.73 -0.14 -1.76 16 3 C -0.10 -1.55 2.14 -90.49 -0.19 -1.75 16 4 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 5 C 0.11 1.64 4.18 -3.71 -0.02 1.62 16 6 N -0.59 -9.86 2.97 -172.76 -0.51 -10.37 16 7 C 0.55 9.14 6.97 -10.98 -0.08 9.06 16 8 O -0.55 -11.10 16.15 5.56 0.09 -11.01 16 9 C -0.16 -1.96 1.37 -155.66 -0.21 -2.18 16 10 C -0.12 -1.26 9.30 37.16 0.35 -0.91 16 11 C -0.16 -1.62 9.57 -26.73 -0.26 -1.88 16 12 C -0.15 -1.61 9.74 -26.74 -0.26 -1.87 16 13 C 0.12 2.19 6.16 -3.71 -0.02 2.17 16 14 C -0.15 -2.62 5.78 -26.61 -0.15 -2.78 16 15 C 0.18 3.29 2.53 -67.89 -0.17 3.12 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 N -0.72 -16.35 3.73 -53.38 -0.20 -16.55 16 18 C -0.24 -6.17 9.93 -15.05 -0.15 -6.32 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.02 13.06 55.49 0.72 -26.30 16 22 Si 0.90 21.88 29.55 -169.99 -5.02 16.85 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.55 6.70 -51.93 -0.35 0.20 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 31 H 0.09 1.08 3.05 -51.93 -0.16 0.92 16 32 H 0.08 1.30 6.64 -51.93 -0.35 0.95 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.07 0.78 5.77 -51.93 -0.30 0.48 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.10 1.23 8.01 -51.93 -0.42 0.81 16 40 H 0.08 1.43 7.03 -51.93 -0.37 1.06 16 41 H 0.08 1.71 7.75 -51.92 -0.40 1.30 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.38 9.30 5.95 -40.82 -0.24 9.05 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -29.87 347.14 -8.32 -38.19 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.59 Total: 9.20 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.04 Total: -5.25 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.01 Total: -53.21 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.87 -8.32 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.112 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds