Wall clock time and date at job start Tue Mar 31 2020 02:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46906 * 2 1 4 4 H 1.08993 * 109.49695 * 304.99853 * 3 2 1 5 5 C 1.53192 * 109.49670 * 65.06886 * 3 2 1 6 6 N 1.46924 * 108.77183 * 174.61661 * 5 3 2 7 7 C 1.34775 * 120.63377 * 126.37007 * 6 5 3 8 8 O 1.21275 * 120.00575 * 175.84399 * 7 6 5 9 9 C 1.50710 * 119.99656 * 355.84651 * 7 6 5 10 10 C 1.53000 * 115.54753 * 66.36896 * 9 7 6 11 11 C 1.52995 * 117.49614 * 280.66523 * 9 7 6 12 12 C 1.52991 * 117.49548 * 212.04157 * 9 7 6 13 13 C 1.46927 * 118.73969 * 306.38781 * 6 5 3 14 14 C 1.53193 * 108.77642 * 53.60999 * 13 6 5 15 15 C 1.53039 * 109.31351 * 305.36613 * 14 13 6 16 16 H 1.08997 * 109.46380 * 181.38228 * 15 14 13 17 17 N 1.46498 * 109.46072 * 301.34658 * 15 14 13 18 18 C 1.36943 * 119.99567 * 275.06956 * 17 15 14 19 19 H 1.07997 * 120.00216 * 359.97438 * 18 17 15 20 20 C 1.38817 * 119.99972 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99719 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00196 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47420 * 89.99222 * 22 20 18 24 24 H 1.48497 * 109.47122 * 210.00019 * 22 20 18 25 25 H 1.48504 * 109.46908 * 329.99562 * 22 20 18 26 26 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46721 * 300.00030 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99841 * 1 2 3 29 29 H 1.09001 * 109.46721 * 239.99970 * 2 1 3 30 30 H 1.08991 * 109.46879 * 120.00136 * 2 1 3 31 31 H 1.09000 * 109.58449 * 294.39944 * 5 3 2 32 32 H 1.08997 * 109.58628 * 54.68254 * 5 3 2 33 33 H 1.09001 * 109.47119 * 54.65628 * 10 9 7 34 34 H 1.09000 * 109.47012 * 174.65257 * 10 9 7 35 35 H 1.09001 * 109.47717 * 294.65341 * 10 9 7 36 36 H 1.09003 * 117.50099 * 359.97438 * 11 9 7 37 37 H 1.09000 * 117.49907 * 145.01874 * 11 9 7 38 38 H 1.09004 * 117.49525 * 214.97770 * 12 9 7 39 39 H 1.08999 * 117.50404 * 359.97438 * 12 9 7 40 40 H 1.09001 * 109.58762 * 173.39928 * 13 6 5 41 41 H 1.09007 * 109.58673 * 293.68092 * 13 6 5 42 42 H 1.09001 * 109.49476 * 65.31589 * 14 13 6 43 43 H 1.08997 * 109.49855 * 185.41453 * 14 13 6 44 44 H 0.96996 * 120.00668 * 95.06444 * 17 15 14 45 45 H 0.97003 * 119.99705 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9819 -0.8416 5 6 1.6365 2.1275 1.3095 6 7 2.2424 3.4654 1.3495 7 6 1.4822 4.5574 1.5643 8 8 2.0029 5.6475 1.6703 9 6 -0.0150 4.4237 1.6730 10 6 -0.5215 3.6473 2.8902 11 6 -0.8089 4.2944 0.3715 12 6 -0.8665 5.5940 1.1770 13 6 3.6928 3.5903 1.1505 14 6 4.0733 2.8889 -0.1572 15 6 3.5655 1.4456 -0.1237 16 1 3.8563 0.9369 -1.0428 17 7 4.1497 0.7492 1.0251 18 6 5.3880 0.1740 0.9198 19 1 5.9337 0.2335 -0.0103 20 6 5.9414 -0.4864 2.0081 21 7 5.2761 -0.5593 3.1415 22 14 7.6302 -1.2716 1.8643 23 1 8.6698 -0.2840 2.2504 24 1 7.7069 -2.4493 2.7656 25 1 7.8564 -1.7058 0.4623 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.5511 2.2163 1.3560 32 1 1.9914 1.5378 2.1547 33 1 -0.1129 4.0893 3.7989 34 1 -1.6102 3.6919 2.9222 35 1 -0.2025 2.6076 2.8166 36 1 -0.2484 4.3065 -0.5633 37 1 -1.6924 3.6561 0.3822 38 1 -1.7879 5.8106 1.7176 39 1 -0.3439 6.4608 0.7725 40 1 3.9641 4.6444 1.0922 41 1 4.2176 3.1235 1.9841 42 1 3.6197 3.4148 -0.9973 43 1 5.1575 2.8906 -0.2688 44 1 3.6595 0.6955 1.8604 45 1 5.6627 -1.0211 3.9019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037848770.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:31 Heat of formation + Delta-G solvation = -25.117576 kcal Electronic energy + Delta-G solvation = -23803.786340 eV Core-core repulsion = 20628.174523 eV Total energy + Delta-G solvation = -3175.611816 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66792 -39.54028 -37.70734 -35.84462 -35.12301 -33.56958 -31.29541 -29.83858 -29.48692 -26.79863 -25.55768 -25.19738 -23.45140 -23.31412 -21.75586 -20.48873 -19.42032 -19.27304 -17.82176 -17.20034 -16.71013 -16.37249 -15.85674 -15.68023 -15.44864 -15.25633 -14.80289 -14.68281 -14.38308 -14.10900 -13.91760 -13.56205 -13.30566 -13.23052 -13.02064 -12.86851 -12.81375 -12.60889 -12.38118 -12.35877 -12.14927 -12.05626 -11.82631 -11.52107 -11.45512 -11.39364 -11.21422 -10.88813 -10.84534 -10.59630 -9.61293 -8.92259 -7.89981 -5.15373 1.47866 1.48936 1.53918 1.56272 1.97963 2.58835 2.78903 3.42149 3.46278 3.72572 3.79329 3.89189 3.96971 4.04701 4.08785 4.11128 4.28978 4.37446 4.46238 4.51094 4.59911 4.68479 4.76036 4.80028 4.81855 4.88413 4.92061 4.96268 5.01818 5.02496 5.11488 5.15029 5.23284 5.25801 5.27907 5.31101 5.34803 5.48307 5.55107 5.60634 5.72319 6.32670 6.47127 7.13776 7.40290 8.16801 8.40408 9.33364 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.005316 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.167331 B = 5266.067194 C = 5743.957898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.093 4.093 4 H 0.092 0.908 5 C 0.117 3.883 6 N -0.594 5.594 7 C 0.540 3.460 8 O -0.594 6.594 9 C -0.177 4.177 10 C -0.113 4.113 11 C -0.136 4.136 12 C -0.145 4.145 13 C 0.125 3.875 14 C -0.138 4.138 15 C 0.171 3.829 16 H 0.048 0.952 17 N -0.722 5.722 18 C -0.228 4.228 19 H 0.072 0.928 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.962 3.038 23 H -0.294 1.294 24 H -0.299 1.299 25 H -0.271 1.271 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.120 0.880 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.374 0.626 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.799 5.869 -6.915 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.113 4.113 4 H 0.110 0.890 5 C -0.005 4.005 6 N -0.324 5.324 7 C 0.330 3.670 8 O -0.476 6.476 9 C -0.180 4.180 10 C -0.170 4.170 11 C -0.173 4.173 12 C -0.182 4.182 13 C 0.002 3.998 14 C -0.179 4.179 15 C 0.063 3.937 16 H 0.066 0.934 17 N -0.363 5.363 18 C -0.360 4.360 19 H 0.090 0.910 20 C -0.264 4.264 21 N -0.619 5.619 22 Si 0.792 3.208 23 H -0.222 1.222 24 H -0.226 1.226 25 H -0.196 1.196 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.208 0.792 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.350 6.345 -6.946 18.863 hybrid contribution 1.791 -0.478 0.738 1.995 sum -14.558 5.868 -6.208 16.880 Atomic orbital electron populations 1.21804 0.93742 1.02136 1.02606 1.21350 0.96896 0.94662 1.01581 1.21688 0.94836 0.96954 0.97787 0.88996 1.22034 0.99680 0.81093 0.97719 1.48095 1.07633 1.07380 1.69336 1.20343 0.89178 0.82834 0.74634 1.90619 1.75570 1.28275 1.53087 1.21378 0.88248 1.07693 1.00647 1.21475 1.02742 0.99130 0.93653 1.23232 1.01519 1.00205 0.92380 1.23092 1.00695 0.91877 1.02562 1.21286 0.80214 0.99984 0.98270 1.22382 1.00949 0.98528 0.95996 1.20467 0.92192 0.90332 0.90751 0.93444 1.42549 1.18159 1.64129 1.11506 1.19564 0.94523 1.25191 0.96769 0.90979 1.25353 1.01703 1.03234 0.96064 1.69789 1.39482 1.49817 1.02824 0.85304 0.80823 0.77412 0.77215 1.22224 1.22599 1.19590 0.92530 0.91966 0.91187 0.92459 0.93891 0.86210 0.93353 0.93240 0.88304 0.91130 0.88944 0.84584 0.85474 0.90021 0.91346 0.93611 0.91175 0.92367 0.79190 0.94350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.67 71.98 0.70 -2.08 16 2 C -0.11 -2.93 5.19 30.60 0.16 -2.77 16 3 C -0.09 -2.64 2.14 -10.71 -0.02 -2.66 16 4 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 5 C 0.12 3.36 4.18 86.36 0.36 3.72 16 6 N -0.59 -19.60 2.97 -818.89 -2.43 -22.03 16 7 C 0.54 17.74 6.97 87.66 0.61 18.35 16 8 O -0.59 -24.27 16.15 -3.02 -0.05 -24.32 16 9 C -0.18 -3.98 1.37 -52.93 -0.07 -4.05 16 10 C -0.11 -2.12 9.30 71.98 0.67 -1.45 16 11 C -0.14 -2.17 9.57 30.59 0.29 -1.88 16 12 C -0.14 -2.71 9.74 30.59 0.30 -2.41 16 13 C 0.13 4.76 6.16 86.36 0.53 5.30 16 14 C -0.14 -4.87 5.78 30.67 0.18 -4.69 16 15 C 0.17 6.27 2.53 45.02 0.11 6.39 16 16 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 17 N -0.72 -33.67 3.73 -322.80 -1.20 -34.87 16 18 C -0.23 -12.11 9.93 84.03 0.83 -11.27 16 19 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 20 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 21 N -0.97 -57.86 13.06 21.65 0.28 -57.58 16 22 Si 0.96 45.82 29.55 68.60 2.03 47.85 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.06 1.06 6.70 -2.39 -0.02 1.04 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.48 7.70 -2.39 -0.02 1.46 16 31 H 0.12 2.64 3.05 -2.39 -0.01 2.63 16 32 H 0.05 1.69 6.64 -2.39 -0.02 1.67 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 35 H 0.07 1.32 5.77 -2.39 -0.01 1.31 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.13 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.08 1.86 8.01 -2.39 -0.02 1.84 16 40 H 0.07 2.68 7.03 -2.39 -0.02 2.66 16 41 H 0.05 2.05 7.75 -2.38 -0.02 2.03 16 42 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.37 18.86 5.95 -92.71 -0.55 18.31 16 45 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -67.55 347.14 4.16 -63.39 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.42 Total: 30.58 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 5.12 Total: -3.03 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -3.35 Total: -114.48 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.05 Total: -24.32 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -67.55 4.16 -63.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848770.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.277 kcal (2) G-P(sol) polarization free energy of solvation -67.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds