Wall clock time and date at job start Tue Mar 31 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47410 * 2 1 4 4 H 1.09003 * 109.52184 * 305.07835 * 3 2 1 5 5 C 1.53194 * 109.50067 * 65.15893 * 3 2 1 6 6 N 1.46922 * 108.77795 * 174.58866 * 5 3 2 7 7 C 1.34771 * 120.62960 * 126.41386 * 6 5 3 8 8 O 1.21285 * 120.00337 * 175.55848 * 7 6 5 9 9 C 1.50708 * 120.00207 * 355.55941 * 7 6 5 10 10 C 1.52999 * 115.54527 * 67.97342 * 9 7 6 11 11 C 1.52996 * 117.49599 * 282.30500 * 9 7 6 12 12 C 1.52996 * 117.50098 * 213.64559 * 9 7 6 13 13 C 1.46928 * 118.73754 * 306.39382 * 6 5 3 14 14 C 1.53188 * 108.77667 * 53.60848 * 13 6 5 15 15 C 1.53039 * 109.50019 * 185.00127 * 3 2 1 16 16 H 1.08998 * 109.44785 * 298.69643 * 15 3 2 17 17 N 1.46496 * 109.46247 * 58.65928 * 15 3 2 18 18 C 1.36939 * 120.00383 * 205.06656 * 17 15 3 19 19 H 1.07995 * 119.99413 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99998 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99996 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00357 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47507 * 89.99399 * 22 20 18 24 24 H 1.48504 * 109.46995 * 329.99471 * 22 20 18 25 25 H 1.48499 * 109.47356 * 209.99778 * 22 20 18 26 26 H 1.09007 * 109.47278 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47296 * 300.00320 * 1 2 3 28 28 H 1.09002 * 109.47187 * 59.99900 * 1 2 3 29 29 H 1.09008 * 109.47108 * 239.99572 * 2 1 3 30 30 H 1.09002 * 109.47187 * 120.00100 * 2 1 3 31 31 H 1.09006 * 109.58253 * 54.79931 * 5 3 2 32 32 H 1.09004 * 109.58215 * 294.37925 * 5 3 2 33 33 H 1.08996 * 109.47304 * 65.60953 * 10 9 7 34 34 H 1.09005 * 109.46726 * 185.60465 * 10 9 7 35 35 H 1.08992 * 109.47434 * 305.60154 * 10 9 7 36 36 H 1.08996 * 117.50045 * 0.02562 * 11 9 7 37 37 H 1.09001 * 117.49470 * 145.02171 * 11 9 7 38 38 H 1.09000 * 117.50142 * 214.98384 * 12 9 7 39 39 H 1.09008 * 117.49696 * 359.97314 * 12 9 7 40 40 H 1.08998 * 109.58523 * 293.81812 * 13 6 5 41 41 H 1.09002 * 109.58006 * 173.39491 * 13 6 5 42 42 H 1.09001 * 109.49552 * 185.41098 * 14 13 6 43 43 H 1.09005 * 109.52291 * 65.33451 * 14 13 6 44 44 H 0.97010 * 119.99827 * 25.07557 * 17 15 3 45 45 H 0.96992 * 120.00325 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4644 1.3506 7 6 1.4858 4.5564 1.5680 8 8 2.0076 5.6456 1.6792 9 6 -0.0118 4.4243 1.6730 10 6 -0.5234 3.6769 2.9061 11 6 -0.7996 4.2624 0.3714 12 6 -0.8619 5.5817 1.1452 13 6 3.6953 3.5887 1.1498 14 6 4.0737 2.8881 -0.1589 15 6 3.5652 1.4450 -0.1258 16 1 4.0006 0.9261 0.7282 17 7 3.9542 0.7619 -1.3620 18 6 5.1918 0.1850 -1.4653 19 1 5.8809 0.2332 -0.6352 20 6 5.5600 -0.4626 -2.6365 21 7 6.7498 -1.0167 -2.7360 22 14 4.3678 -0.5466 -4.0720 23 1 4.5700 0.6315 -4.9531 24 1 2.9743 -0.5474 -3.5587 25 1 4.6110 -1.7907 -4.8454 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9965 1.5377 2.1549 32 1 0.5532 2.2161 1.3584 33 1 -0.2833 4.2483 3.8027 34 1 -1.6038 3.5524 2.8331 35 1 -0.0477 2.6978 2.9609 36 1 -0.2347 4.2511 -0.5607 37 1 -1.6826 3.6238 0.3938 38 1 -1.7858 5.8106 1.6762 39 1 -0.3379 6.4390 0.7224 40 1 4.2209 3.1190 1.9811 41 1 3.9669 4.6428 1.0918 42 1 5.1578 2.8894 -0.2719 43 1 3.6197 3.4146 -0.9985 44 1 3.3350 0.7185 -2.1075 45 1 7.0073 -1.4689 -3.5545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037848772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:36 Heat of formation + Delta-G solvation = -6.959426 kcal Electronic energy + Delta-G solvation = -23514.196062 eV Core-core repulsion = 20339.371642 eV Total energy + Delta-G solvation = -3174.824420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.57083 -38.29219 -36.78671 -34.71881 -33.84256 -31.93000 -30.21191 -28.94634 -28.72945 -25.49441 -24.22142 -23.27130 -22.64720 -21.63017 -20.65191 -19.90862 -18.74144 -17.53879 -16.81269 -16.15917 -15.50121 -14.95372 -14.54823 -14.42122 -14.28287 -13.86791 -13.69791 -13.45776 -13.26179 -12.81375 -12.72539 -12.56841 -12.44440 -12.30812 -11.95811 -11.80089 -11.68628 -11.49686 -11.04016 -11.00984 -10.78927 -10.71592 -10.48704 -10.35295 -10.27912 -10.17185 -9.85977 -9.62056 -9.51284 -8.94128 -8.51266 -7.29118 -5.79710 -3.15179 2.59552 2.98917 3.33793 3.37273 3.42981 3.53442 4.33410 4.49099 4.56100 4.62674 4.76416 4.89737 4.96487 5.10210 5.28247 5.36670 5.40387 5.41878 5.42146 5.45726 5.51053 5.54208 5.58202 5.62751 5.68792 5.73875 5.85387 5.91359 5.92046 5.95284 6.01746 6.10252 6.18423 6.23393 6.35253 6.42893 6.55766 6.66091 6.83052 6.94365 7.49411 7.96248 8.22771 8.39408 9.17618 9.90248 10.10071 11.38703 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.005063 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.432180 B = 5528.647695 C = 6011.584950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.111 3.889 6 N -0.601 5.601 7 C 0.550 3.450 8 O -0.546 6.546 9 C -0.159 4.159 10 C -0.115 4.115 11 C -0.159 4.159 12 C -0.146 4.146 13 C 0.111 3.889 14 C -0.150 4.150 15 C 0.188 3.812 16 H 0.057 0.943 17 N -0.745 5.745 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.882 3.118 23 H -0.285 1.285 24 H -0.277 1.277 25 H -0.292 1.292 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.529 7.230 9.643 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.128 4.128 4 H 0.088 0.912 5 C -0.012 4.012 6 N -0.332 5.332 7 C 0.337 3.663 8 O -0.424 6.424 9 C -0.163 4.163 10 C -0.172 4.172 11 C -0.196 4.196 12 C -0.184 4.184 13 C -0.011 4.011 14 C -0.191 4.191 15 C 0.078 3.922 16 H 0.075 0.925 17 N -0.387 5.387 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.713 3.287 23 H -0.212 1.212 24 H -0.203 1.203 25 H -0.218 1.218 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.980 7.692 9.741 21.032 hybrid contribution -0.637 -0.212 -1.234 1.405 sum -17.617 7.480 8.507 20.944 Atomic orbital electron populations 1.21849 0.96701 1.01269 1.01185 1.21483 0.94452 0.95776 1.03599 1.21833 0.97876 0.96192 0.96945 0.91230 1.22027 0.98737 0.82295 0.98132 1.48091 1.08460 1.06628 1.70058 1.19525 0.87278 0.83677 0.75795 1.90667 1.74211 1.26686 1.50794 1.21376 0.91158 1.05755 0.97968 1.21427 1.01018 0.99799 0.94950 1.23133 1.01608 1.00511 0.94374 1.23004 1.00524 0.92442 1.02384 1.21724 0.78868 1.02148 0.98371 1.22630 1.02599 0.98398 0.95449 1.20166 0.90572 0.90800 0.90619 0.92548 1.42764 1.16515 1.66311 1.13069 1.19054 0.90471 1.27174 1.00472 0.89210 1.24648 0.96406 1.00283 0.97636 1.69693 1.19320 1.41617 1.27512 0.86594 0.81097 0.77311 0.83747 1.21202 1.20314 1.21807 0.92995 0.93141 0.93034 0.90345 0.91896 0.91322 0.89076 0.91695 0.91451 0.91230 0.88363 0.87827 0.88042 0.88020 0.91596 0.89656 0.90122 0.92454 0.80666 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.67 37.15 0.36 -1.27 16 2 C -0.11 -1.57 5.31 -26.74 -0.14 -1.72 16 3 C -0.11 -1.53 1.92 -90.50 -0.17 -1.71 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 5 C 0.11 1.32 4.34 -3.71 -0.02 1.30 16 6 N -0.60 -8.28 2.97 -172.76 -0.51 -8.79 16 7 C 0.55 7.96 6.96 -10.98 -0.08 7.88 16 8 O -0.55 -9.84 16.19 5.55 0.09 -9.75 16 9 C -0.16 -1.72 1.35 -155.66 -0.21 -1.93 16 10 C -0.11 -0.96 9.28 37.16 0.34 -0.62 16 11 C -0.16 -1.48 9.46 -26.70 -0.25 -1.73 16 12 C -0.15 -1.42 9.78 -26.70 -0.26 -1.68 16 13 C 0.11 1.66 6.42 -3.71 -0.02 1.64 16 14 C -0.15 -2.55 5.66 -26.61 -0.15 -2.70 16 15 C 0.19 3.35 2.19 -67.89 -0.15 3.20 16 16 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 17 N -0.74 -16.53 4.13 -53.39 -0.22 -16.75 16 18 C -0.24 -6.52 10.41 -15.06 -0.16 -6.68 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -28.81 13.97 55.49 0.78 -28.04 16 22 Si 0.88 21.65 27.74 -169.99 -4.71 16.93 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.45 6.70 -51.93 -0.35 0.10 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 1.31 7.22 -51.92 -0.37 0.93 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.91 3.25 -51.93 -0.17 0.74 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.07 0.56 5.91 -51.93 -0.31 0.25 16 36 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.14 8.04 -51.92 -0.42 0.72 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.09 1.35 7.03 -51.93 -0.37 0.98 16 42 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.36 7.99 5.38 -40.82 -0.22 7.77 16 45 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -31.70 347.76 -8.05 -39.75 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -7.70 Total: 7.34 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.00 Total: -5.93 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.04 Total: -53.58 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.71 Total: 16.93 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.70 -8.05 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.793 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds