Wall clock time and date at job start Tue Mar 31 2020 02:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47410 * 2 1 4 4 H 1.09003 * 109.52184 * 305.07835 * 3 2 1 5 5 C 1.53194 * 109.50067 * 65.15893 * 3 2 1 6 6 N 1.46922 * 108.77795 * 174.58866 * 5 3 2 7 7 C 1.34771 * 120.62960 * 126.41386 * 6 5 3 8 8 O 1.21285 * 120.00337 * 175.55848 * 7 6 5 9 9 C 1.50708 * 120.00207 * 355.55941 * 7 6 5 10 10 C 1.52999 * 115.54527 * 67.97342 * 9 7 6 11 11 C 1.52996 * 117.49599 * 282.30500 * 9 7 6 12 12 C 1.52996 * 117.50098 * 213.64559 * 9 7 6 13 13 C 1.46928 * 118.73754 * 306.39382 * 6 5 3 14 14 C 1.53188 * 108.77667 * 53.60848 * 13 6 5 15 15 C 1.53039 * 109.50019 * 185.00127 * 3 2 1 16 16 H 1.08998 * 109.44785 * 298.69643 * 15 3 2 17 17 N 1.46496 * 109.46247 * 58.65928 * 15 3 2 18 18 C 1.36939 * 120.00383 * 205.06656 * 17 15 3 19 19 H 1.07995 * 119.99413 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99998 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99996 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00357 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47507 * 89.99399 * 22 20 18 24 24 H 1.48504 * 109.46995 * 329.99471 * 22 20 18 25 25 H 1.48499 * 109.47356 * 209.99778 * 22 20 18 26 26 H 1.09007 * 109.47278 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47296 * 300.00320 * 1 2 3 28 28 H 1.09002 * 109.47187 * 59.99900 * 1 2 3 29 29 H 1.09008 * 109.47108 * 239.99572 * 2 1 3 30 30 H 1.09002 * 109.47187 * 120.00100 * 2 1 3 31 31 H 1.09006 * 109.58253 * 54.79931 * 5 3 2 32 32 H 1.09004 * 109.58215 * 294.37925 * 5 3 2 33 33 H 1.08996 * 109.47304 * 65.60953 * 10 9 7 34 34 H 1.09005 * 109.46726 * 185.60465 * 10 9 7 35 35 H 1.08992 * 109.47434 * 305.60154 * 10 9 7 36 36 H 1.08996 * 117.50045 * 0.02562 * 11 9 7 37 37 H 1.09001 * 117.49470 * 145.02171 * 11 9 7 38 38 H 1.09000 * 117.50142 * 214.98384 * 12 9 7 39 39 H 1.09008 * 117.49696 * 359.97314 * 12 9 7 40 40 H 1.08998 * 109.58523 * 293.81812 * 13 6 5 41 41 H 1.09002 * 109.58006 * 173.39491 * 13 6 5 42 42 H 1.09001 * 109.49552 * 185.41098 * 14 13 6 43 43 H 1.09005 * 109.52291 * 65.33451 * 14 13 6 44 44 H 0.97010 * 119.99827 * 25.07557 * 17 15 3 45 45 H 0.96992 * 120.00325 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6385 2.1268 1.3105 6 7 2.2451 3.4644 1.3506 7 6 1.4858 4.5564 1.5680 8 8 2.0076 5.6456 1.6792 9 6 -0.0118 4.4243 1.6730 10 6 -0.5234 3.6769 2.9061 11 6 -0.7996 4.2624 0.3714 12 6 -0.8619 5.5817 1.1452 13 6 3.6953 3.5887 1.1498 14 6 4.0737 2.8881 -0.1589 15 6 3.5652 1.4450 -0.1258 16 1 4.0006 0.9261 0.7282 17 7 3.9542 0.7619 -1.3620 18 6 5.1918 0.1850 -1.4653 19 1 5.8809 0.2332 -0.6352 20 6 5.5600 -0.4626 -2.6365 21 7 6.7498 -1.0167 -2.7360 22 14 4.3678 -0.5466 -4.0720 23 1 4.5700 0.6315 -4.9531 24 1 2.9743 -0.5474 -3.5587 25 1 4.6110 -1.7907 -4.8454 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.9965 1.5377 2.1549 32 1 0.5532 2.2161 1.3584 33 1 -0.2833 4.2483 3.8027 34 1 -1.6038 3.5524 2.8331 35 1 -0.0477 2.6978 2.9609 36 1 -0.2347 4.2511 -0.5607 37 1 -1.6826 3.6238 0.3938 38 1 -1.7858 5.8106 1.6762 39 1 -0.3379 6.4390 0.7224 40 1 4.2209 3.1190 1.9811 41 1 3.9669 4.6428 1.0918 42 1 5.1578 2.8894 -0.2719 43 1 3.6197 3.4146 -0.9985 44 1 3.3350 0.7185 -2.1075 45 1 7.0073 -1.4689 -3.5545 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037848772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:35 Heat of formation + Delta-G solvation = -26.447569 kcal Electronic energy + Delta-G solvation = -23515.041131 eV Core-core repulsion = 20339.371642 eV Total energy + Delta-G solvation = -3175.669489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66432 -39.51398 -37.73999 -36.29110 -35.11461 -33.73954 -31.82681 -30.05525 -29.47920 -26.92472 -25.32898 -24.79244 -23.35794 -23.03254 -21.80999 -21.25534 -20.01719 -19.29410 -17.85842 -17.27423 -16.70891 -16.51361 -16.02201 -15.59220 -15.28518 -15.27612 -14.87228 -14.62038 -14.51835 -14.15511 -13.98459 -13.71375 -13.48860 -13.22148 -13.19644 -13.02665 -12.83981 -12.68473 -12.51132 -12.41265 -12.16690 -12.03107 -11.85377 -11.59451 -11.49807 -11.46883 -11.22303 -10.92924 -10.91471 -10.61919 -9.71653 -9.28212 -8.00864 -5.33204 1.36557 1.39719 1.46906 1.51090 1.92415 2.48782 2.76048 3.30580 3.40845 3.53722 3.70012 3.76587 3.93120 3.95905 4.03055 4.06067 4.25775 4.27654 4.42379 4.48805 4.61691 4.64225 4.74086 4.75938 4.80066 4.80689 4.87654 4.91015 4.94379 4.98509 5.00187 5.12045 5.14508 5.22561 5.29476 5.34464 5.37606 5.49648 5.50400 5.66448 5.79255 6.23272 6.39790 7.09566 7.10945 7.85915 8.04897 9.20954 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.005063 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.432180 B = 5528.647695 C = 6011.584950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.097 4.097 4 H 0.068 0.932 5 C 0.116 3.884 6 N -0.600 5.600 7 C 0.543 3.457 8 O -0.590 6.590 9 C -0.170 4.170 10 C -0.112 4.112 11 C -0.145 4.145 12 C -0.149 4.149 13 C 0.119 3.881 14 C -0.139 4.139 15 C 0.182 3.818 16 H 0.047 0.953 17 N -0.745 5.745 18 C -0.221 4.221 19 H 0.057 0.943 20 C -0.063 4.063 21 N -0.986 5.986 22 Si 0.949 3.051 23 H -0.286 1.286 24 H -0.247 1.247 25 H -0.298 1.298 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.364 0.636 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.726 7.160 10.415 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.117 4.117 4 H 0.087 0.913 5 C -0.006 4.006 6 N -0.331 5.331 7 C 0.332 3.668 8 O -0.471 6.471 9 C -0.173 4.173 10 C -0.169 4.169 11 C -0.182 4.182 12 C -0.186 4.186 13 C -0.005 4.005 14 C -0.180 4.180 15 C 0.074 3.926 16 H 0.065 0.935 17 N -0.387 5.387 18 C -0.352 4.352 19 H 0.075 0.925 20 C -0.254 4.254 21 N -0.637 5.637 22 Si 0.777 3.223 23 H -0.212 1.212 24 H -0.172 1.172 25 H -0.225 1.225 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.197 0.803 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.236 7.634 10.549 24.910 hybrid contribution 0.752 -0.119 -1.388 1.583 sum -20.484 7.515 9.161 23.664 Atomic orbital electron populations 1.21811 0.93694 1.02258 1.02649 1.21436 0.97073 0.94538 1.02116 1.21719 0.94365 0.97254 0.98403 0.91311 1.22167 1.00404 0.80990 0.97049 1.48158 1.07727 1.07572 1.69643 1.20304 0.89068 0.82851 0.74543 1.90645 1.75431 1.28339 1.52713 1.21428 0.88329 1.07434 1.00116 1.21473 1.02759 0.99421 0.93200 1.23240 1.01803 1.00377 0.92739 1.23083 1.01026 0.91855 1.02646 1.21510 0.80420 1.01185 0.97349 1.22434 1.00901 0.98133 0.96541 1.20396 0.93677 0.90189 0.88332 0.93516 1.42739 1.14846 1.66317 1.14787 1.18998 0.91489 1.25704 0.99058 0.92524 1.25416 0.98251 1.00938 1.00776 1.69876 1.21810 1.43696 1.28288 0.85498 0.80296 0.76653 0.79864 1.21242 1.17154 1.22493 0.92369 0.90513 0.92679 0.93578 0.91746 0.89938 0.86042 0.92305 0.88613 0.90609 0.89850 0.84581 0.85381 0.90376 0.90529 0.90756 0.92608 0.93266 0.80287 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.67 71.98 0.70 -1.78 16 2 C -0.11 -2.80 5.31 30.59 0.16 -2.64 16 3 C -0.10 -2.54 1.92 -10.72 -0.02 -2.56 16 4 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.12 2.38 4.34 86.36 0.38 2.75 16 6 N -0.60 -15.57 2.97 -818.89 -2.43 -18.00 16 7 C 0.54 14.93 6.96 87.66 0.61 15.54 16 8 O -0.59 -21.33 16.19 -3.04 -0.05 -21.38 16 9 C -0.17 -3.11 1.35 -52.93 -0.07 -3.18 16 10 C -0.11 -1.36 9.28 71.98 0.67 -0.69 16 11 C -0.14 -2.10 9.46 30.62 0.29 -1.81 16 12 C -0.15 -2.48 9.78 30.62 0.30 -2.18 16 13 C 0.12 3.54 6.42 86.36 0.55 4.09 16 14 C -0.14 -4.83 5.66 30.67 0.17 -4.65 16 15 C 0.18 6.44 2.19 45.02 0.10 6.54 16 16 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 17 N -0.74 -33.06 4.13 -322.83 -1.33 -34.40 16 18 C -0.22 -12.26 10.41 84.03 0.87 -11.39 16 19 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 20 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 21 N -0.99 -62.94 13.97 21.65 0.30 -62.64 16 22 Si 0.95 45.03 27.74 68.60 1.90 46.93 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 26 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.08 0.90 6.70 -2.39 -0.02 0.89 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 1.45 7.22 -2.38 -0.02 1.43 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.12 1.82 3.25 -2.38 -0.01 1.81 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.67 8.09 -2.38 -0.02 0.65 16 35 H 0.08 0.82 5.91 -2.39 -0.01 0.81 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.68 8.04 -2.38 -0.02 1.66 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.07 2.41 7.03 -2.39 -0.02 2.39 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.36 15.70 5.38 -92.70 -0.50 15.21 16 45 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -72.44 347.76 3.97 -68.47 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.41 Total: 26.16 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.18 Total: -5.14 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -3.47 Total: -115.04 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.90 Total: 46.93 kcal Total: -72.44 3.97 -68.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.018 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds