Wall clock time and date at job start Tue Mar 31 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47499 * 2 1 4 4 H 1.09003 * 109.52128 * 54.92010 * 3 2 1 5 5 C 1.53188 * 109.49533 * 294.84308 * 3 2 1 6 6 N 1.46931 * 108.77467 * 185.41142 * 5 3 2 7 7 C 1.34772 * 120.62878 * 233.58646 * 6 5 3 8 8 O 1.21280 * 120.00554 * 355.58143 * 7 6 5 9 9 C 1.50704 * 119.99918 * 175.58007 * 7 6 5 10 10 C 1.52996 * 115.54944 * 68.12252 * 9 7 6 11 11 C 1.52999 * 117.49834 * 282.45195 * 9 7 6 12 12 C 1.53002 * 117.49836 * 213.79094 * 9 7 6 13 13 C 1.46922 * 118.74002 * 53.60680 * 6 5 3 14 14 C 1.53199 * 108.77522 * 306.39121 * 13 6 5 15 15 C 1.53040 * 109.30949 * 54.63654 * 14 13 6 16 16 H 1.08998 * 109.46741 * 58.64109 * 15 14 13 17 17 N 1.46500 * 109.46327 * 178.61563 * 15 14 13 18 18 C 1.36934 * 120.00114 * 275.00430 * 17 15 14 19 19 H 1.08004 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38817 * 120.00332 * 179.97438 * 18 17 15 21 21 N 1.31615 * 119.99940 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99725 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46928 * 269.99866 * 22 20 18 24 24 H 1.48498 * 109.47082 * 29.99917 * 22 20 18 25 25 H 1.48496 * 109.46889 * 150.00231 * 22 20 18 26 26 H 1.09005 * 109.46912 * 299.99612 * 1 2 3 27 27 H 1.08997 * 109.47231 * 59.99638 * 1 2 3 28 28 H 1.08993 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47354 * 240.00165 * 2 1 3 30 30 H 1.09005 * 109.47449 * 120.00171 * 2 1 3 31 31 H 1.08996 * 109.59318 * 65.62485 * 5 3 2 32 32 H 1.08997 * 109.59060 * 305.19725 * 5 3 2 33 33 H 1.08998 * 109.47323 * 54.53979 * 10 9 7 34 34 H 1.08998 * 109.47272 * 174.53979 * 10 9 7 35 35 H 1.09000 * 109.47326 * 294.53704 * 10 9 7 36 36 H 1.08998 * 117.50058 * 359.97438 * 11 9 7 37 37 H 1.09002 * 117.49960 * 145.02075 * 11 9 7 38 38 H 1.09002 * 117.49916 * 214.97377 * 12 9 7 39 39 H 1.08999 * 117.50040 * 359.97438 * 12 9 7 40 40 H 1.09001 * 109.58674 * 186.61062 * 13 6 5 41 41 H 1.09000 * 109.70401 * 66.24730 * 13 6 5 42 42 H 1.09000 * 109.49681 * 294.68890 * 14 13 6 43 43 H 1.09002 * 109.52594 * 174.59854 * 14 13 6 44 44 H 0.97006 * 120.00100 * 94.99077 * 17 15 14 45 45 H 0.96991 * 120.00082 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9828 0.8408 5 6 1.6385 2.1268 -1.3104 6 7 2.2452 3.4644 -1.3506 7 6 1.4858 4.5564 -1.5680 8 8 0.3041 4.4347 -1.8122 9 6 2.1052 5.9290 -1.5076 10 6 3.0983 6.2546 -2.6250 11 6 2.3808 6.5194 -0.1233 12 6 1.2378 7.0727 -0.9780 13 6 3.6953 3.5888 -1.1499 14 6 4.0738 2.8881 0.1589 15 6 3.5653 1.4450 0.1257 16 1 4.0007 0.9261 -0.7283 17 7 3.9542 0.7619 1.3619 18 6 5.1918 0.1850 1.4652 19 1 5.8810 0.2333 0.6351 20 6 5.5605 -0.4618 2.6368 21 7 6.7499 -1.0167 2.7359 22 14 4.3687 -0.5446 4.0728 23 1 4.5715 0.6341 4.9530 24 1 2.9751 -0.5455 3.5599 25 1 4.6121 -1.7882 4.8470 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5533 2.2162 -1.3585 32 1 1.9964 1.5378 -2.1549 33 1 2.6226 6.0933 -3.5923 34 1 3.4096 7.2959 -2.5424 35 1 3.9702 5.6065 -2.5363 36 1 2.1138 5.9152 0.7438 37 1 3.2695 7.1400 -0.0087 38 1 1.3750 8.0572 -1.4253 39 1 0.2191 6.8325 -0.6737 40 1 3.9670 4.6428 -1.0918 41 1 4.2229 3.1206 -1.9808 42 1 3.6193 3.4147 0.9981 43 1 5.1578 2.8893 0.2725 44 1 3.3351 0.7184 2.1075 45 1 7.0077 -1.4684 3.5546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037848774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:40 Heat of formation + Delta-G solvation = -7.022787 kcal Electronic energy + Delta-G solvation = -23360.831906 eV Core-core repulsion = 20186.004738 eV Total energy + Delta-G solvation = -3174.827167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54307 -38.30917 -36.68554 -34.81264 -33.87341 -31.78388 -29.89936 -29.47529 -28.49432 -25.63660 -23.99075 -23.11906 -22.60583 -21.74348 -20.83092 -19.83250 -18.61972 -17.54182 -16.80046 -16.13073 -15.41713 -15.15672 -14.60650 -14.28451 -14.21885 -13.78767 -13.53081 -13.40617 -13.30773 -12.86665 -12.76739 -12.59442 -12.40355 -12.34235 -11.82282 -11.76972 -11.69313 -11.42190 -11.04411 -10.99945 -10.78835 -10.68747 -10.44696 -10.34234 -10.23568 -10.14029 -9.76646 -9.60690 -9.59408 -8.94267 -8.51247 -7.29591 -5.80472 -3.15724 2.60092 2.98964 3.34444 3.37868 3.43186 3.56366 4.36771 4.52530 4.55941 4.66354 4.79331 4.96386 5.04791 5.15245 5.21958 5.36524 5.43891 5.44715 5.47861 5.48975 5.52230 5.55802 5.62111 5.66032 5.72123 5.79061 5.88799 5.93728 5.95943 6.01182 6.05024 6.11628 6.23871 6.28949 6.33822 6.46364 6.56119 6.69980 6.80476 6.93986 7.49501 7.95337 8.22469 8.38758 9.17061 9.89932 10.09994 11.37905 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.005129 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.258180 B = 5457.902577 C = 6116.770227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.600 5.600 7 C 0.551 3.449 8 O -0.548 6.548 9 C -0.159 4.159 10 C -0.114 4.114 11 C -0.158 4.158 12 C -0.147 4.147 13 C 0.103 3.897 14 C -0.151 4.151 15 C 0.188 3.812 16 H 0.056 0.944 17 N -0.745 5.745 18 C -0.242 4.242 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.881 3.119 23 H -0.285 1.285 24 H -0.277 1.277 25 H -0.292 1.292 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.184 13.147 -8.997 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.332 5.332 7 C 0.338 3.662 8 O -0.426 6.426 9 C -0.162 4.162 10 C -0.171 4.171 11 C -0.196 4.196 12 C -0.184 4.184 13 C -0.020 4.020 14 C -0.192 4.192 15 C 0.078 3.922 16 H 0.074 0.926 17 N -0.387 5.387 18 C -0.372 4.372 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.581 5.581 22 Si 0.712 3.288 23 H -0.212 1.212 24 H -0.203 1.203 25 H -0.218 1.218 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.557 12.951 -9.166 18.523 hybrid contribution -0.581 -0.166 1.236 1.376 sum -10.138 12.785 -7.931 18.142 Atomic orbital electron populations 1.21852 0.96663 1.01179 1.01408 1.21468 0.94527 0.95708 1.03440 1.21826 0.97662 0.96254 0.97019 0.91385 1.21731 0.99396 0.81621 0.97580 1.48088 1.08669 1.06419 1.70030 1.19534 0.85878 0.84830 0.75928 1.90658 1.16070 1.86654 1.49208 1.21367 1.03721 0.92837 0.98305 1.21426 0.97347 1.02049 0.96307 1.23121 1.00710 1.02921 0.92812 1.23022 0.96748 0.96443 1.02183 1.22011 0.79261 1.01804 0.98902 1.22635 1.02555 0.98623 0.95362 1.20164 0.90641 0.90757 0.90602 0.92558 1.42774 1.16503 1.66302 1.13092 1.19050 0.90428 1.27271 1.00401 0.89209 1.24643 0.96393 1.00255 0.97655 1.69690 1.19349 1.41600 1.27504 0.86603 0.81168 0.77320 0.83733 1.21198 1.20298 1.21796 0.93136 0.92941 0.93027 0.91928 0.90418 0.89210 0.91494 0.91800 0.91490 0.91072 0.88334 0.87756 0.88060 0.88094 0.89533 0.91444 0.92321 0.90113 0.80642 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.11 -1.66 1.92 -90.50 -0.17 -1.84 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.69 5.31 -3.71 -0.02 1.67 16 6 N -0.60 -8.25 2.97 -172.77 -0.51 -8.76 16 7 C 0.55 7.95 6.95 -10.99 -0.08 7.87 16 8 O -0.55 -9.70 16.20 5.56 0.09 -9.61 16 9 C -0.16 -1.76 1.35 -155.66 -0.21 -1.97 16 10 C -0.11 -1.00 9.33 37.16 0.35 -0.66 16 11 C -0.16 -1.55 9.48 -26.69 -0.25 -1.80 16 12 C -0.15 -1.46 9.75 -26.69 -0.26 -1.72 16 13 C 0.10 1.29 5.64 -3.71 -0.02 1.27 16 14 C -0.15 -2.36 5.66 -26.61 -0.15 -2.51 16 15 C 0.19 3.35 2.19 -67.89 -0.15 3.20 16 16 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 17 N -0.74 -16.53 4.13 -53.38 -0.22 -16.75 16 18 C -0.24 -6.46 10.41 -15.06 -0.16 -6.62 16 19 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -28.63 13.97 55.49 0.78 -27.85 16 22 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.38 7.22 -51.93 -0.37 1.01 16 31 H 0.09 1.33 5.75 -51.93 -0.30 1.04 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.07 0.59 5.92 -51.93 -0.31 0.28 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.14 8.04 -51.93 -0.42 0.72 16 40 H 0.09 0.93 4.35 -51.93 -0.23 0.70 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.36 8.07 5.38 -40.82 -0.22 7.85 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 347.83 15.07 5.24 5.24 Total: -1.00 -31.31 347.83 -8.04 -39.35 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -7.70 Total: 7.97 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.00 Total: -6.56 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.04 Total: -53.36 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.31 -8.04 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.325 kcal (2) G-P(sol) polarization free energy of solvation -31.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds