Wall clock time and date at job start Tue Mar 31 2020 02:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47499 * 2 1 4 4 H 1.09003 * 109.52128 * 54.92010 * 3 2 1 5 5 C 1.53188 * 109.49533 * 294.84308 * 3 2 1 6 6 N 1.46931 * 108.77467 * 185.41142 * 5 3 2 7 7 C 1.34772 * 120.62878 * 233.58646 * 6 5 3 8 8 O 1.21280 * 120.00554 * 355.58143 * 7 6 5 9 9 C 1.50704 * 119.99918 * 175.58007 * 7 6 5 10 10 C 1.52996 * 115.54944 * 68.12252 * 9 7 6 11 11 C 1.52999 * 117.49834 * 282.45195 * 9 7 6 12 12 C 1.53002 * 117.49836 * 213.79094 * 9 7 6 13 13 C 1.46922 * 118.74002 * 53.60680 * 6 5 3 14 14 C 1.53199 * 108.77522 * 306.39121 * 13 6 5 15 15 C 1.53040 * 109.30949 * 54.63654 * 14 13 6 16 16 H 1.08998 * 109.46741 * 58.64109 * 15 14 13 17 17 N 1.46500 * 109.46327 * 178.61563 * 15 14 13 18 18 C 1.36934 * 120.00114 * 275.00430 * 17 15 14 19 19 H 1.08004 * 119.99704 * 359.97438 * 18 17 15 20 20 C 1.38817 * 120.00332 * 179.97438 * 18 17 15 21 21 N 1.31615 * 119.99940 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99725 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46928 * 269.99866 * 22 20 18 24 24 H 1.48498 * 109.47082 * 29.99917 * 22 20 18 25 25 H 1.48496 * 109.46889 * 150.00231 * 22 20 18 26 26 H 1.09005 * 109.46912 * 299.99612 * 1 2 3 27 27 H 1.08997 * 109.47231 * 59.99638 * 1 2 3 28 28 H 1.08993 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47354 * 240.00165 * 2 1 3 30 30 H 1.09005 * 109.47449 * 120.00171 * 2 1 3 31 31 H 1.08996 * 109.59318 * 65.62485 * 5 3 2 32 32 H 1.08997 * 109.59060 * 305.19725 * 5 3 2 33 33 H 1.08998 * 109.47323 * 54.53979 * 10 9 7 34 34 H 1.08998 * 109.47272 * 174.53979 * 10 9 7 35 35 H 1.09000 * 109.47326 * 294.53704 * 10 9 7 36 36 H 1.08998 * 117.50058 * 359.97438 * 11 9 7 37 37 H 1.09002 * 117.49960 * 145.02075 * 11 9 7 38 38 H 1.09002 * 117.49916 * 214.97377 * 12 9 7 39 39 H 1.08999 * 117.50040 * 359.97438 * 12 9 7 40 40 H 1.09001 * 109.58674 * 186.61062 * 13 6 5 41 41 H 1.09000 * 109.70401 * 66.24730 * 13 6 5 42 42 H 1.09000 * 109.49681 * 294.68890 * 14 13 6 43 43 H 1.09002 * 109.52594 * 174.59854 * 14 13 6 44 44 H 0.97006 * 120.00100 * 94.99077 * 17 15 14 45 45 H 0.96991 * 120.00082 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9828 0.8408 5 6 1.6385 2.1268 -1.3104 6 7 2.2452 3.4644 -1.3506 7 6 1.4858 4.5564 -1.5680 8 8 0.3041 4.4347 -1.8122 9 6 2.1052 5.9290 -1.5076 10 6 3.0983 6.2546 -2.6250 11 6 2.3808 6.5194 -0.1233 12 6 1.2378 7.0727 -0.9780 13 6 3.6953 3.5888 -1.1499 14 6 4.0738 2.8881 0.1589 15 6 3.5653 1.4450 0.1257 16 1 4.0007 0.9261 -0.7283 17 7 3.9542 0.7619 1.3619 18 6 5.1918 0.1850 1.4652 19 1 5.8810 0.2333 0.6351 20 6 5.5605 -0.4618 2.6368 21 7 6.7499 -1.0167 2.7359 22 14 4.3687 -0.5446 4.0728 23 1 4.5715 0.6341 4.9530 24 1 2.9751 -0.5455 3.5599 25 1 4.6121 -1.7882 4.8470 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5533 2.2162 -1.3585 32 1 1.9964 1.5378 -2.1549 33 1 2.6226 6.0933 -3.5923 34 1 3.4096 7.2959 -2.5424 35 1 3.9702 5.6065 -2.5363 36 1 2.1138 5.9152 0.7438 37 1 3.2695 7.1400 -0.0087 38 1 1.3750 8.0572 -1.4253 39 1 0.2191 6.8325 -0.6737 40 1 3.9670 4.6428 -1.0918 41 1 4.2229 3.1206 -1.9808 42 1 3.6193 3.4147 0.9981 43 1 5.1578 2.8893 0.2725 44 1 3.3351 0.7184 2.1075 45 1 7.0077 -1.4684 3.5546 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037848774.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:39 Heat of formation + Delta-G solvation = -25.651430 kcal Electronic energy + Delta-G solvation = -23361.639704 eV Core-core repulsion = 20186.004738 eV Total energy + Delta-G solvation = -3175.634966 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64507 -39.54206 -37.68445 -36.28915 -35.31263 -33.61375 -31.49772 -30.51716 -29.38053 -27.03929 -25.28058 -24.60940 -23.36625 -23.01098 -22.15789 -21.21845 -19.84688 -19.31424 -17.86209 -17.22969 -16.79683 -16.42593 -16.09394 -15.72668 -15.33419 -15.05745 -14.72906 -14.66937 -14.58496 -14.24296 -14.01874 -13.86938 -13.48182 -13.26443 -13.14210 -13.02254 -12.89036 -12.62568 -12.57349 -12.43119 -12.12033 -12.03409 -11.85947 -11.66263 -11.59066 -11.49459 -11.15686 -10.98256 -10.89637 -10.64312 -9.70046 -9.26120 -7.99484 -5.31091 1.38099 1.39043 1.46526 1.51343 1.93302 2.49415 2.75287 3.32348 3.41114 3.53450 3.69807 3.76564 3.91155 3.92899 4.00277 4.05409 4.23536 4.29319 4.37373 4.43319 4.58067 4.64098 4.72971 4.76244 4.77508 4.78972 4.82728 4.88561 4.94885 4.96873 4.99144 5.03077 5.14082 5.20521 5.23301 5.28271 5.33407 5.43406 5.48916 5.62983 5.81100 6.24711 6.39110 7.10701 7.11099 7.87543 8.06013 9.22159 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.005129 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.258180 B = 5457.902577 C = 6116.770227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.095 4.095 4 H 0.060 0.940 5 C 0.123 3.877 6 N -0.600 5.600 7 C 0.545 3.455 8 O -0.586 6.586 9 C -0.171 4.171 10 C -0.111 4.111 11 C -0.149 4.149 12 C -0.145 4.145 13 C 0.112 3.888 14 C -0.142 4.142 15 C 0.182 3.818 16 H 0.048 0.952 17 N -0.747 5.747 18 C -0.217 4.217 19 H 0.062 0.938 20 C -0.060 4.060 21 N -0.984 5.984 22 Si 0.944 3.056 23 H -0.282 1.282 24 H -0.255 1.255 25 H -0.300 1.300 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.362 0.638 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.246 15.081 -9.651 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.150 4.150 3 C -0.115 4.115 4 H 0.079 0.921 5 C 0.000 4.000 6 N -0.331 5.331 7 C 0.335 3.665 8 O -0.467 6.467 9 C -0.174 4.174 10 C -0.168 4.168 11 C -0.186 4.186 12 C -0.182 4.182 13 C -0.011 4.011 14 C -0.183 4.183 15 C 0.074 3.926 16 H 0.066 0.934 17 N -0.389 5.389 18 C -0.348 4.348 19 H 0.080 0.920 20 C -0.251 4.251 21 N -0.635 5.635 22 Si 0.773 3.227 23 H -0.209 1.209 24 H -0.180 1.180 25 H -0.227 1.227 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.130 0.870 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.195 0.805 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.650 14.923 -9.854 20.814 hybrid contribution -0.260 -0.751 1.343 1.561 sum -10.911 14.172 -8.511 19.807 Atomic orbital electron populations 1.21791 0.94765 1.02074 1.01820 1.21426 0.96197 0.95127 1.02272 1.21676 0.95530 0.96654 0.97643 0.92108 1.21643 0.99265 0.82093 0.96954 1.48158 1.09075 1.06241 1.69651 1.20173 0.85456 0.86062 0.74838 1.90636 1.17773 1.87331 1.50926 1.21443 1.04863 0.91071 1.00015 1.21453 0.96649 1.03673 0.94983 1.23189 1.01544 1.02464 0.91430 1.23100 0.95834 0.97208 1.02076 1.22026 0.78607 1.03080 0.97361 1.22443 1.01433 0.97145 0.97239 1.20396 0.92398 0.91487 0.88330 0.93423 1.42779 1.14907 1.66517 1.14676 1.19005 0.91271 1.25520 0.99000 0.91991 1.25342 0.98085 1.01090 1.00628 1.69856 1.21684 1.43757 1.28206 0.85564 0.80108 0.76743 0.80280 1.20881 1.18002 1.22688 0.93256 0.91974 0.91937 0.91619 0.93016 0.89614 0.90382 0.92312 0.89115 0.90530 0.89831 0.85211 0.85499 0.89996 0.87020 0.90142 0.92638 0.91527 0.80525 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.67 71.98 0.70 -2.91 16 2 C -0.11 -3.30 5.31 30.60 0.16 -3.14 16 3 C -0.09 -2.83 1.92 -10.72 -0.02 -2.86 16 4 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 5 C 0.12 3.30 5.31 86.36 0.46 3.76 16 6 N -0.60 -15.40 2.97 -818.90 -2.43 -17.84 16 7 C 0.55 14.86 6.95 87.66 0.61 15.47 16 8 O -0.59 -20.27 16.20 -3.03 -0.05 -20.32 16 9 C -0.17 -3.34 1.35 -52.93 -0.07 -3.41 16 10 C -0.11 -1.56 9.33 71.98 0.67 -0.89 16 11 C -0.15 -2.49 9.48 30.62 0.29 -2.20 16 12 C -0.14 -2.54 9.75 30.62 0.30 -2.24 16 13 C 0.11 2.54 5.64 86.37 0.49 3.03 16 14 C -0.14 -4.26 5.66 30.67 0.17 -4.09 16 15 C 0.18 6.34 2.19 45.02 0.10 6.44 16 16 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 17 N -0.75 -32.88 4.13 -322.81 -1.33 -34.21 16 18 C -0.22 -11.75 10.41 84.04 0.87 -10.88 16 19 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 20 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 21 N -0.98 -61.90 13.97 21.65 0.30 -61.59 16 22 Si 0.94 45.05 27.74 68.60 1.90 46.95 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.26 -11.09 6.52 99.48 0.65 -10.44 16 25 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.06 1.41 6.70 -2.39 -0.02 1.39 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.80 7.22 -2.38 -0.02 1.78 16 31 H 0.09 2.43 5.75 -2.39 -0.01 2.42 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.87 8.09 -2.39 -0.02 0.85 16 35 H 0.08 0.98 5.92 -2.39 -0.01 0.97 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.08 1.76 8.04 -2.39 -0.02 1.74 16 40 H 0.11 2.04 4.35 -2.39 -0.01 2.03 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.36 15.82 5.38 -92.70 -0.50 15.32 16 45 H 0.26 15.45 8.31 -92.72 -0.77 14.68 16 Total: -1.00 -68.92 347.83 3.99 -64.93 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.41 Total: 28.98 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.20 Total: -6.89 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -3.47 Total: -113.64 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.95 kcal Total: -68.92 3.99 -64.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037848774.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.275 kcal (2) G-P(sol) polarization free energy of solvation -68.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds