Wall clock time and date at job start Tue Mar 31 2020 03:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47449 * 2 1 4 4 H 1.08997 * 109.47072 * 54.99886 * 3 2 1 5 5 C 1.52997 * 109.47070 * 294.99843 * 3 2 1 6 6 C 1.50696 * 109.46904 * 175.00121 * 3 2 1 7 7 O 1.21283 * 120.00394 * 14.16099 * 6 3 2 8 8 N 1.34779 * 120.00036 * 194.43976 * 6 3 2 9 9 C 1.46953 * 120.43924 * 354.23924 * 8 6 3 10 10 C 1.54065 * 108.29979 * 125.72153 * 9 8 6 11 11 H 1.08998 * 110.52514 * 172.87402 * 10 9 8 12 12 C 1.53377 * 108.83361 * 294.51227 * 10 9 8 13 13 C 1.53007 * 109.25402 * 60.26016 * 12 10 9 14 14 C 1.53009 * 109.80272 * 60.57158 * 13 12 10 15 15 C 1.53364 * 109.27890 * 299.44542 * 14 13 12 16 16 H 1.08998 * 110.59588 * 178.09517 * 15 14 13 17 17 C 1.46942 * 120.44826 * 174.51230 * 8 6 3 18 18 N 1.47570 * 107.98651 * 56.33366 * 15 14 13 19 19 C 1.36939 * 121.61158 * 122.27986 * 18 15 14 20 20 H 1.08008 * 119.99606 * 331.79071 * 19 18 15 21 21 C 1.38806 * 120.00182 * 151.79222 * 19 18 15 22 22 N 1.31621 * 119.99931 * 344.10799 * 21 19 18 23 23 Si 1.86801 * 120.00149 * 164.11664 * 21 19 18 24 24 H 1.48500 * 109.47046 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47343 * 119.99885 * 23 21 19 26 26 H 1.48506 * 109.46839 * 239.99635 * 23 21 19 27 27 H 1.09000 * 109.46712 * 300.00580 * 1 2 3 28 28 H 1.09000 * 109.46599 * 59.99661 * 1 2 3 29 29 H 1.08991 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46712 * 239.99420 * 2 1 3 31 31 H 1.09007 * 109.46884 * 120.00594 * 2 1 3 32 32 H 1.09005 * 109.47082 * 62.70713 * 5 3 2 33 33 H 1.08998 * 109.47145 * 182.70147 * 5 3 2 34 34 H 1.09003 * 109.47409 * 302.70494 * 5 3 2 35 35 H 1.08993 * 109.62181 * 245.48689 * 9 8 6 36 36 H 1.09004 * 109.62163 * 6.05219 * 9 8 6 37 37 H 1.09004 * 109.50809 * 300.31909 * 12 10 9 38 38 H 1.09002 * 109.53918 * 180.21106 * 12 10 9 39 39 H 1.09001 * 109.41250 * 300.47412 * 13 12 10 40 40 H 1.08996 * 109.36307 * 180.64568 * 13 12 10 41 41 H 1.08997 * 109.49845 * 179.50044 * 14 13 12 42 42 H 1.09002 * 109.53140 * 59.40803 * 14 13 12 43 43 H 1.09008 * 109.62246 * 353.96658 * 17 8 6 44 44 H 1.09003 * 109.62855 * 114.33914 * 17 8 6 45 45 H 0.96996 * 119.99681 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5420 1.4441 0.1238 7 8 4.1662 0.4194 -0.0528 8 7 4.1911 2.5832 0.4363 9 6 3.4598 3.8540 0.5345 10 6 3.7475 4.4722 1.9160 11 1 3.3252 5.4749 1.9814 12 6 3.1513 3.5641 2.9987 13 6 3.7979 2.1802 2.9087 14 6 5.3067 2.2974 3.1339 15 6 5.9115 3.2009 2.0523 16 1 6.9824 3.3265 2.2123 17 6 5.6406 2.5720 0.6775 18 7 5.2115 4.4992 2.0993 19 6 5.8878 5.6724 2.3033 20 1 6.8103 5.6732 2.8650 21 6 5.3877 6.8603 1.7882 22 7 4.4579 6.8341 0.8569 23 14 6.0344 8.4963 2.4164 24 1 7.0677 8.2542 3.4551 25 1 6.6327 9.2575 1.2904 26 1 4.9165 9.2780 3.0035 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 0.5482 2.1681 -1.3742 33 1 2.0397 3.1385 -1.3282 34 1 2.0299 1.5602 -2.1510 35 1 3.7962 4.5315 -0.2503 36 1 2.3905 3.6700 0.4295 37 1 2.0757 3.4740 2.8466 38 1 3.3452 3.9931 3.9818 39 1 3.6106 1.7564 1.9220 40 1 3.3672 1.5299 3.6700 41 1 5.7609 1.3081 3.0776 42 1 5.4960 2.7293 4.1167 43 1 6.0057 1.5450 0.6663 44 1 6.1453 3.1483 -0.0980 45 1 4.1082 7.6643 0.4972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039514701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:22 Heat of formation + Delta-G solvation = -1.550500 kcal Electronic energy + Delta-G solvation = -24682.026300 eV Core-core repulsion = 21507.436429 eV Total energy + Delta-G solvation = -3174.589871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.69883 -37.92915 -35.25671 -33.82374 -32.93634 -31.89472 -30.23924 -29.61180 -26.93252 -25.55618 -25.02123 -23.51279 -21.90885 -21.40950 -20.75469 -18.77981 -18.25851 -17.23398 -15.96460 -15.51381 -15.21695 -14.78261 -14.34398 -14.05841 -13.77713 -13.50682 -13.25095 -13.14109 -12.82838 -12.61721 -12.37614 -12.13372 -12.04453 -11.91482 -11.55694 -11.42285 -11.27074 -11.04127 -10.89134 -10.72515 -10.67778 -10.56866 -10.31728 -10.18811 -10.09357 -10.03050 -9.50864 -9.49878 -9.05630 -8.65853 -7.72069 -6.61719 -5.88840 -3.30662 3.09397 3.32101 3.41020 3.42540 3.61259 4.41766 4.83730 4.91334 5.06642 5.17292 5.28589 5.42824 5.47635 5.55366 5.65243 5.70838 5.73014 5.75571 5.85093 5.89596 5.98534 5.99789 6.03001 6.06934 6.13664 6.26398 6.34856 6.37729 6.41541 6.45358 6.50568 6.53861 6.62376 6.68984 6.75180 6.87206 7.03498 7.13335 7.25630 7.52369 7.71806 8.08400 8.33061 8.70002 9.10143 9.71341 10.33511 11.19559 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.006040 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.635602 B = 4634.737116 C = 4989.439995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.148 4.148 6 C 0.516 3.484 7 O -0.563 6.563 8 N -0.590 5.590 9 C 0.099 3.901 10 C 0.177 3.823 11 H 0.116 0.884 12 C -0.132 4.132 13 C -0.140 4.140 14 C -0.121 4.121 15 C 0.153 3.847 16 H 0.077 0.923 17 C 0.101 3.899 18 N -0.579 5.579 19 C -0.245 4.245 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.289 1.289 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.053 0.947 39 H 0.086 0.914 40 H 0.031 0.969 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.764 -8.191 -0.856 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.134 4.134 4 H 0.112 0.888 5 C -0.205 4.205 6 C 0.305 3.695 7 O -0.444 6.444 8 N -0.321 5.321 9 C -0.025 4.025 10 C 0.070 3.930 11 H 0.133 0.867 12 C -0.171 4.171 13 C -0.178 4.178 14 C -0.161 4.161 15 C 0.045 3.955 16 H 0.095 0.905 17 C -0.023 4.023 18 N -0.300 5.300 19 C -0.374 4.374 20 H 0.085 0.915 21 C -0.195 4.195 22 N -0.549 5.549 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.216 1.216 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.463 -8.521 -1.022 10.744 hybrid contribution 0.295 1.049 0.355 1.146 sum -6.168 -7.472 -0.666 9.712 Atomic orbital electron populations 1.21836 0.95775 1.01479 1.01885 1.21319 0.95050 0.94621 1.03086 1.21375 0.92741 0.98699 1.00587 0.88805 1.21898 1.01785 1.01124 0.95698 1.20337 0.89940 0.83226 0.75983 1.90626 1.69062 1.32595 1.52083 1.48267 1.09108 1.08282 1.66461 1.22638 0.94280 0.83417 1.02126 1.21194 0.84570 0.98446 0.88807 0.86677 1.22127 0.97617 0.96369 1.01028 1.22117 0.95829 0.97290 1.02561 1.21907 0.96109 0.98345 0.99695 1.21226 0.96163 0.86867 0.91211 0.90491 1.22197 0.80127 1.00884 0.99138 1.44350 1.01251 1.00831 1.83568 1.19218 1.06967 0.84396 1.26812 0.91549 1.24983 0.99651 0.98296 0.96537 1.69922 1.31633 1.26052 1.27252 0.86198 0.78208 0.83973 0.78217 1.20375 1.21793 1.21624 0.92732 0.92481 0.92789 0.91346 0.91705 0.91547 0.91319 0.92355 0.89574 0.91564 0.93834 0.92785 0.89653 0.94992 0.93537 0.92712 0.90630 0.91981 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.10 -1.33 4.72 -26.73 -0.13 -1.46 16 3 C -0.11 -1.61 1.72 -91.78 -0.16 -1.77 16 4 H 0.09 1.30 7.07 -51.93 -0.37 0.94 16 5 C -0.15 -1.87 8.49 37.16 0.32 -1.56 16 6 C 0.52 9.29 4.38 -10.99 -0.05 9.25 16 7 O -0.56 -11.65 15.50 5.56 0.09 -11.56 16 8 N -0.59 -11.13 1.64 -171.95 -0.28 -11.41 16 9 C 0.10 1.90 4.75 -3.24 -0.02 1.89 16 10 C 0.18 3.78 2.62 -66.59 -0.17 3.60 16 11 H 0.12 2.79 5.94 -51.93 -0.31 2.48 16 12 C -0.13 -2.48 5.59 -26.53 -0.15 -2.63 16 13 C -0.14 -2.54 5.55 -26.72 -0.15 -2.69 16 14 C -0.12 -2.26 5.58 -26.54 -0.15 -2.41 16 15 C 0.15 3.12 3.61 -66.85 -0.24 2.88 16 16 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 17 C 0.10 1.99 5.87 -3.49 -0.02 1.97 16 18 N -0.58 -13.35 2.53 -155.15 -0.39 -13.74 16 19 C -0.24 -6.26 9.73 -15.06 -0.15 -6.41 16 20 H 0.07 1.71 7.88 -52.48 -0.41 1.29 16 21 C 0.00 0.09 5.04 -17.43 -0.09 0.00 16 22 N -0.90 -23.63 10.61 55.49 0.59 -23.04 16 23 Si 0.90 20.68 29.58 -169.99 -5.03 15.65 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.53 6.62 -51.93 -0.34 0.18 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.69 6.70 -51.93 -0.35 0.34 16 33 H 0.07 0.94 6.08 -51.93 -0.32 0.62 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.91 7.72 -51.93 -0.40 1.51 16 36 H 0.07 1.10 4.67 -51.93 -0.24 0.86 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.57 2.30 -52.42 -0.12 1.45 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.47 7.02 -51.92 -0.36 1.10 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -27.50 326.36 -8.32 -35.83 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -7.42 Total: 3.87 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.79 Total: -0.51 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.09 Total: -48.19 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.50 -8.32 -35.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039514701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.275 kcal (2) G-P(sol) polarization free energy of solvation -27.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds