Wall clock time and date at job start Tue Mar 31 2020 03:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47449 * 2 1 4 4 H 1.08997 * 109.47072 * 54.99886 * 3 2 1 5 5 C 1.52997 * 109.47070 * 294.99843 * 3 2 1 6 6 C 1.50696 * 109.46904 * 175.00121 * 3 2 1 7 7 O 1.21283 * 120.00394 * 14.16099 * 6 3 2 8 8 N 1.34779 * 120.00036 * 194.43976 * 6 3 2 9 9 C 1.46953 * 120.43924 * 354.23924 * 8 6 3 10 10 C 1.54065 * 108.29979 * 125.72153 * 9 8 6 11 11 H 1.08998 * 110.52514 * 172.87402 * 10 9 8 12 12 C 1.53377 * 108.83361 * 294.51227 * 10 9 8 13 13 C 1.53007 * 109.25402 * 60.26016 * 12 10 9 14 14 C 1.53009 * 109.80272 * 60.57158 * 13 12 10 15 15 C 1.53364 * 109.27890 * 299.44542 * 14 13 12 16 16 H 1.08998 * 110.59588 * 178.09517 * 15 14 13 17 17 C 1.46942 * 120.44826 * 174.51230 * 8 6 3 18 18 N 1.47570 * 107.98651 * 56.33366 * 15 14 13 19 19 C 1.36939 * 121.61158 * 122.27986 * 18 15 14 20 20 H 1.08008 * 119.99606 * 331.79071 * 19 18 15 21 21 C 1.38806 * 120.00182 * 151.79222 * 19 18 15 22 22 N 1.31621 * 119.99931 * 344.10799 * 21 19 18 23 23 Si 1.86801 * 120.00149 * 164.11664 * 21 19 18 24 24 H 1.48500 * 109.47046 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47343 * 119.99885 * 23 21 19 26 26 H 1.48506 * 109.46839 * 239.99635 * 23 21 19 27 27 H 1.09000 * 109.46712 * 300.00580 * 1 2 3 28 28 H 1.09000 * 109.46599 * 59.99661 * 1 2 3 29 29 H 1.08991 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46712 * 239.99420 * 2 1 3 31 31 H 1.09007 * 109.46884 * 120.00594 * 2 1 3 32 32 H 1.09005 * 109.47082 * 62.70713 * 5 3 2 33 33 H 1.08998 * 109.47145 * 182.70147 * 5 3 2 34 34 H 1.09003 * 109.47409 * 302.70494 * 5 3 2 35 35 H 1.08993 * 109.62181 * 245.48689 * 9 8 6 36 36 H 1.09004 * 109.62163 * 6.05219 * 9 8 6 37 37 H 1.09004 * 109.50809 * 300.31909 * 12 10 9 38 38 H 1.09002 * 109.53918 * 180.21106 * 12 10 9 39 39 H 1.09001 * 109.41250 * 300.47412 * 13 12 10 40 40 H 1.08996 * 109.36307 * 180.64568 * 13 12 10 41 41 H 1.08997 * 109.49845 * 179.50044 * 14 13 12 42 42 H 1.09002 * 109.53140 * 59.40803 * 14 13 12 43 43 H 1.09008 * 109.62246 * 353.96658 * 17 8 6 44 44 H 1.09003 * 109.62855 * 114.33914 * 17 8 6 45 45 H 0.96996 * 119.99681 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6354 2.1265 -1.3073 6 6 3.5420 1.4441 0.1238 7 8 4.1662 0.4194 -0.0528 8 7 4.1911 2.5832 0.4363 9 6 3.4598 3.8540 0.5345 10 6 3.7475 4.4722 1.9160 11 1 3.3252 5.4749 1.9814 12 6 3.1513 3.5641 2.9987 13 6 3.7979 2.1802 2.9087 14 6 5.3067 2.2974 3.1339 15 6 5.9115 3.2009 2.0523 16 1 6.9824 3.3265 2.2123 17 6 5.6406 2.5720 0.6775 18 7 5.2115 4.4992 2.0993 19 6 5.8878 5.6724 2.3033 20 1 6.8103 5.6732 2.8650 21 6 5.3877 6.8603 1.7882 22 7 4.4579 6.8341 0.8569 23 14 6.0344 8.4963 2.4164 24 1 7.0677 8.2542 3.4551 25 1 6.6327 9.2575 1.2904 26 1 4.9165 9.2780 3.0035 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5140 0.8900 32 1 0.5482 2.1681 -1.3742 33 1 2.0397 3.1385 -1.3282 34 1 2.0299 1.5602 -2.1510 35 1 3.7962 4.5315 -0.2503 36 1 2.3905 3.6700 0.4295 37 1 2.0757 3.4740 2.8466 38 1 3.3452 3.9931 3.9818 39 1 3.6106 1.7564 1.9220 40 1 3.3672 1.5299 3.6700 41 1 5.7609 1.3081 3.0776 42 1 5.4960 2.7293 4.1167 43 1 6.0057 1.5450 0.6663 44 1 6.1453 3.1483 -0.0980 45 1 4.1082 7.6643 0.4972 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039514701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:22 Heat of formation + Delta-G solvation = -14.845847 kcal Electronic energy + Delta-G solvation = -24682.602829 eV Core-core repulsion = 21507.436429 eV Total energy + Delta-G solvation = -3175.166401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20852 -39.45109 -36.43517 -35.51908 -34.59239 -33.47046 -32.02525 -30.64426 -28.57044 -27.09417 -26.23041 -25.16859 -23.38251 -22.97342 -22.08911 -20.15963 -19.95064 -18.74355 -17.61924 -17.00266 -16.56313 -16.54327 -15.74194 -15.59810 -15.23974 -15.09601 -14.61974 -14.50560 -14.30391 -14.10870 -13.87605 -13.56685 -13.41137 -13.08751 -12.92961 -12.78877 -12.65126 -12.57250 -12.51823 -12.28647 -12.08947 -11.87556 -11.75787 -11.71059 -11.59800 -11.55536 -11.12306 -11.09747 -10.68311 -10.42885 -9.37439 -8.41468 -7.83034 -5.26447 1.47805 1.52272 1.59912 1.65794 2.13502 2.54114 3.31878 3.50544 3.56605 3.86337 4.03105 4.09920 4.17405 4.23589 4.27259 4.34657 4.43567 4.54444 4.56227 4.62601 4.66669 4.76757 4.77037 4.81501 4.88520 4.95870 4.99443 5.04097 5.07500 5.13951 5.16746 5.23056 5.23883 5.31859 5.40420 5.48573 5.51042 5.55698 5.63522 5.69121 5.88367 6.42289 6.59769 7.19032 7.22918 7.84428 8.44049 9.22126 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025227 B = 0.006040 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.635602 B = 4634.737116 C = 4989.439995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.109 4.109 4 H 0.105 0.895 5 C -0.144 4.144 6 C 0.514 3.486 7 O -0.590 6.590 8 N -0.592 5.592 9 C 0.115 3.885 10 C 0.173 3.827 11 H 0.086 0.914 12 C -0.123 4.123 13 C -0.138 4.138 14 C -0.115 4.115 15 C 0.149 3.851 16 H 0.073 0.927 17 C 0.107 3.893 18 N -0.593 5.593 19 C -0.257 4.257 20 H 0.058 0.942 21 C -0.037 4.037 22 N -0.919 5.919 23 Si 0.959 3.041 24 H -0.276 1.276 25 H -0.296 1.296 26 H -0.290 1.290 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.043 0.957 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.566 -9.122 -0.522 12.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 C -0.130 4.130 4 H 0.123 0.877 5 C -0.202 4.202 6 C 0.306 3.694 7 O -0.472 6.472 8 N -0.323 5.323 9 C -0.008 4.008 10 C 0.066 3.934 11 H 0.104 0.896 12 C -0.162 4.162 13 C -0.176 4.176 14 C -0.154 4.154 15 C 0.042 3.958 16 H 0.091 0.909 17 C -0.018 4.018 18 N -0.315 5.315 19 C -0.387 4.387 20 H 0.076 0.924 21 C -0.233 4.233 22 N -0.564 5.564 23 Si 0.789 3.211 24 H -0.201 1.201 25 H -0.223 1.223 26 H -0.217 1.217 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.274 -9.471 -0.683 12.595 hybrid contribution 0.907 1.298 0.230 1.600 sum -7.367 -8.174 -0.453 11.013 Atomic orbital electron populations 1.21805 0.93184 1.02598 1.02823 1.21299 0.97193 0.93202 1.02045 1.21463 0.89501 1.00170 1.01834 0.87689 1.21902 1.03726 0.99982 0.94566 1.21068 0.91572 0.82171 0.74609 1.90612 1.70108 1.33406 1.53059 1.48282 1.08609 1.08598 1.66815 1.22363 0.95762 0.82893 0.99826 1.21165 0.83700 0.97800 0.90779 0.89627 1.22010 0.99118 0.95898 0.99211 1.22097 0.95247 0.97074 1.03134 1.21826 0.96732 0.98375 0.98516 1.21323 0.96050 0.86283 0.92194 0.90929 1.22008 0.81079 1.00546 0.98190 1.44509 1.02168 1.00961 1.83835 1.19382 1.07004 0.85765 1.26594 0.92381 1.25537 1.00292 1.00530 0.96951 1.70042 1.32345 1.26197 1.27862 0.85339 0.77531 0.80837 0.77404 1.20108 1.22319 1.21712 0.91947 0.91333 0.91707 0.92380 0.92878 0.88481 0.92508 0.92701 0.92827 0.88546 0.91114 0.93947 0.89694 0.93170 0.92214 0.93179 0.90216 0.93901 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.67 71.98 0.70 -1.72 16 2 C -0.10 -2.31 4.72 30.59 0.14 -2.17 16 3 C -0.11 -2.82 1.72 -11.54 -0.02 -2.84 16 4 H 0.11 2.52 7.07 -2.39 -0.02 2.51 16 5 C -0.14 -3.27 8.49 71.98 0.61 -2.66 16 6 C 0.51 17.82 4.38 87.66 0.38 18.20 16 7 O -0.59 -23.82 15.50 -3.04 -0.05 -23.87 16 8 N -0.59 -21.95 1.64 -816.30 -1.34 -23.29 16 9 C 0.12 4.37 4.75 86.65 0.41 4.79 16 10 C 0.17 7.31 2.62 45.27 0.12 7.43 16 11 H 0.09 4.18 5.94 -2.39 -0.01 4.17 16 12 C -0.12 -4.41 5.59 30.72 0.17 -4.24 16 13 C -0.14 -4.70 5.55 30.60 0.17 -4.53 16 14 C -0.12 -4.17 5.58 30.72 0.17 -4.00 16 15 C 0.15 6.08 3.61 45.11 0.16 6.24 16 16 H 0.07 2.96 8.03 -2.39 -0.02 2.94 16 17 C 0.11 4.24 5.87 86.49 0.51 4.75 16 18 N -0.59 -27.63 2.53 -644.78 -1.63 -29.27 16 19 C -0.26 -13.40 9.73 84.03 0.82 -12.58 16 20 H 0.06 3.05 7.88 -2.91 -0.02 3.03 16 21 C -0.04 -1.91 5.04 84.86 0.43 -1.48 16 22 N -0.92 -48.85 10.61 21.65 0.23 -48.62 16 23 Si 0.96 43.03 29.58 68.60 2.03 45.06 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.30 -13.43 7.11 99.48 0.71 -12.73 16 26 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 27 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.98 6.62 -2.39 -0.02 0.96 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 31 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.10 1.63 6.70 -2.38 -0.02 1.61 16 33 H 0.06 1.43 6.08 -2.39 -0.01 1.42 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 2.41 7.72 -2.39 -0.02 2.39 16 36 H 0.10 3.03 4.67 -2.39 -0.01 3.02 16 37 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 2.94 2.30 -3.36 -0.01 2.93 16 40 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.08 3.09 7.02 -2.38 -0.02 3.07 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 Total: -1.00 -59.15 326.36 4.98 -54.16 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.96 Total: 20.62 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 4.78 Total: 5.20 kcal Atomic # 7 Polarization: -98.44 SS G_CDS: -2.74 Total: -101.18 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.05 Total: -23.87 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -59.15 4.98 -54.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039514701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.319 kcal (2) G-P(sol) polarization free energy of solvation -59.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds