Wall clock time and date at job start Tue Mar 31 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47627 * 2 1 4 4 H 1.09001 * 109.47189 * 304.99542 * 3 2 1 5 5 C 1.53003 * 109.46932 * 64.99630 * 3 2 1 6 6 C 1.50699 * 109.47409 * 184.99297 * 3 2 1 7 7 O 1.21274 * 120.00047 * 335.26566 * 6 3 2 8 8 N 1.34783 * 119.99844 * 155.26007 * 6 3 2 9 9 C 1.46944 * 120.44160 * 185.09354 * 8 6 3 10 10 C 1.53591 * 108.53327 * 125.75117 * 9 8 6 11 11 H 1.08996 * 110.60058 * 172.15700 * 10 9 8 12 12 C 1.53368 * 108.68966 * 294.35964 * 10 9 8 13 13 C 1.53015 * 109.26962 * 60.29053 * 12 10 9 14 14 C 1.53005 * 109.79557 * 60.57158 * 13 12 10 15 15 C 1.53370 * 109.25629 * 299.42176 * 14 13 12 16 16 H 1.09004 * 111.08785 * 177.82640 * 15 14 13 17 17 C 1.46945 * 120.44187 * 4.81621 * 8 6 3 18 18 N 1.47568 * 107.98559 * 56.37819 * 15 14 13 19 19 C 1.36942 * 121.61245 * 122.23546 * 18 15 14 20 20 H 1.07994 * 119.99713 * 32.05354 * 19 18 15 21 21 C 1.38812 * 119.99817 * 212.05158 * 19 18 15 22 22 N 1.31611 * 120.00170 * 10.32703 * 21 19 18 23 23 Si 1.86800 * 119.99654 * 190.32915 * 21 19 18 24 24 H 1.48498 * 109.47417 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47277 * 120.00144 * 23 21 19 26 26 H 1.48505 * 109.46945 * 240.00027 * 23 21 19 27 27 H 1.08996 * 109.47692 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47424 * 300.00565 * 1 2 3 29 29 H 1.09008 * 109.46512 * 60.00418 * 1 2 3 30 30 H 1.09001 * 109.47424 * 239.99435 * 2 1 3 31 31 H 1.09009 * 109.46873 * 119.99986 * 2 1 3 32 32 H 1.09002 * 109.46827 * 174.77510 * 5 3 2 33 33 H 1.08994 * 109.47164 * 54.77003 * 5 3 2 34 34 H 1.09003 * 109.47174 * 294.76944 * 5 3 2 35 35 H 1.09000 * 109.62576 * 245.46856 * 9 8 6 36 36 H 1.09000 * 109.62803 * 6.03757 * 9 8 6 37 37 H 1.08996 * 109.50880 * 180.22864 * 12 10 9 38 38 H 1.09004 * 109.50293 * 300.35532 * 12 10 9 39 39 H 1.08999 * 109.41482 * 300.47482 * 13 12 10 40 40 H 1.09001 * 109.36150 * 180.63767 * 13 12 10 41 41 H 1.08998 * 109.50785 * 179.48612 * 14 13 12 42 42 H 1.08998 * 109.54423 * 59.37556 * 14 13 12 43 43 H 1.09000 * 109.62602 * 353.95603 * 17 8 6 44 44 H 1.08995 * 109.62045 * 114.52031 * 17 8 6 45 45 H 0.97002 * 120.00194 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9815 -0.8419 5 6 1.6353 2.1265 1.3074 6 6 3.5420 1.4441 -0.1237 7 8 4.1812 0.4786 0.2367 8 7 4.1748 2.5188 -0.6348 9 6 5.6260 2.4892 -0.8636 10 6 5.8971 2.8630 -2.3285 11 1 6.9661 2.9866 -2.5012 12 6 5.3154 1.7678 -3.2309 13 6 3.8070 1.6670 -2.9944 14 6 3.1385 3.0000 -3.3370 15 6 3.7116 4.0999 -2.4347 16 1 3.2826 5.0715 -2.6800 17 6 3.4218 3.7335 -0.9765 18 7 5.1763 4.1188 -2.6135 19 6 5.8347 5.2469 -3.0245 20 1 5.4610 6.2215 -2.7472 21 6 6.9825 5.1378 -3.7974 22 7 7.3256 3.9732 -4.3054 23 14 8.0403 6.6441 -4.1166 24 1 7.4411 7.8222 -3.4395 25 1 9.4075 6.4102 -3.5865 26 1 8.1126 6.8975 -5.5780 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 2.0768 3.1223 1.3482 33 1 1.9913 1.5362 2.1516 34 1 0.5493 2.2084 1.3535 35 1 6.1151 3.2076 -0.2058 36 1 6.0077 1.4877 -0.6647 37 1 5.5041 2.0180 -4.2748 38 1 5.7855 0.8133 -2.9940 39 1 3.6196 1.4261 -1.9480 40 1 3.3937 0.8813 -3.6268 41 1 2.0635 2.9202 -3.1756 42 1 3.3325 3.2476 -4.3806 43 1 2.3546 3.5499 -0.8519 44 1 3.7334 4.5519 -0.3276 45 1 8.1279 3.8968 -4.8453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039514702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:26 Heat of formation + Delta-G solvation = -1.536466 kcal Electronic energy + Delta-G solvation = -24588.103659 eV Core-core repulsion = 21413.514397 eV Total energy + Delta-G solvation = -3174.589263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.75414 -37.95987 -35.31553 -33.94716 -32.68479 -31.85265 -30.50083 -29.60092 -26.92774 -25.62479 -25.01418 -23.60027 -21.91953 -21.32129 -20.75188 -18.83863 -18.22806 -17.30092 -16.14240 -15.52434 -15.16723 -14.72284 -14.43595 -14.08514 -13.85253 -13.49923 -13.30647 -13.21177 -12.88964 -12.52925 -12.37683 -12.15282 -12.01278 -11.83286 -11.71401 -11.49318 -11.35330 -11.11933 -10.95179 -10.73995 -10.71165 -10.58280 -10.26679 -10.14953 -10.05137 -9.92997 -9.54248 -9.42755 -9.08726 -8.52353 -7.81117 -6.55534 -5.82711 -3.33692 3.02043 3.33202 3.41257 3.42414 3.50537 4.41887 4.72184 4.81260 4.98178 5.12429 5.32937 5.35069 5.38793 5.46714 5.57638 5.66214 5.72152 5.72695 5.82585 5.86047 5.89681 5.93257 5.96433 6.01883 6.09919 6.20937 6.27042 6.34819 6.36095 6.48551 6.51255 6.55443 6.62180 6.77635 6.93424 6.95536 7.10181 7.17827 7.54693 7.65509 7.74009 7.97672 8.39687 8.62532 9.13548 9.73351 10.37227 11.23053 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032126 B = 0.005416 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.357110 B = 5168.299538 C = 5226.402141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.115 4.115 4 H 0.093 0.907 5 C -0.141 4.141 6 C 0.518 3.482 7 O -0.556 6.556 8 N -0.590 5.590 9 C 0.091 3.909 10 C 0.178 3.822 11 H 0.117 0.883 12 C -0.111 4.111 13 C -0.140 4.140 14 C -0.122 4.122 15 C 0.150 3.850 16 H 0.078 0.922 17 C 0.093 3.907 18 N -0.578 5.578 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.008 3.992 22 N -0.898 5.898 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.079 0.921 40 H 0.029 0.971 41 H 0.038 0.962 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.648 -3.349 7.114 14.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.136 4.136 4 H 0.111 0.889 5 C -0.199 4.199 6 C 0.307 3.693 7 O -0.435 6.435 8 N -0.322 5.322 9 C -0.032 4.032 10 C 0.071 3.929 11 H 0.134 0.866 12 C -0.150 4.150 13 C -0.178 4.178 14 C -0.161 4.161 15 C 0.041 3.959 16 H 0.096 0.904 17 C -0.032 4.032 18 N -0.300 5.300 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.192 4.192 22 N -0.542 5.542 23 Si 0.734 3.266 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.125 -3.831 7.193 13.790 hybrid contribution 0.599 0.821 -0.488 1.127 sum -10.526 -3.010 6.705 12.838 Atomic orbital electron populations 1.21824 0.95667 1.01605 1.01797 1.21347 0.95206 0.94520 1.03226 1.21421 0.92847 0.98923 1.00437 0.88856 1.21775 1.01665 1.00506 0.95916 1.20301 0.89925 0.82501 0.76544 1.90644 1.68124 1.34618 1.50149 1.48176 1.09322 1.13817 1.60859 1.22523 0.78776 1.01382 1.00532 1.21167 0.99499 0.84869 0.87327 0.86571 1.21762 0.93590 0.97360 1.02291 1.22139 0.97412 0.95969 1.02302 1.21952 0.96816 0.96572 1.00788 1.21162 0.87382 0.96614 0.90714 0.90427 1.22346 0.94957 0.86587 0.99270 1.44352 0.98961 1.09115 1.77535 1.19163 1.07446 0.85726 1.25737 0.91670 1.25168 1.00572 0.96682 0.96729 1.69910 1.25792 1.22803 1.35657 0.86205 0.80314 0.82507 0.77591 1.20316 1.21607 1.21720 0.92702 0.92538 0.92718 0.91689 0.91122 0.92156 0.92120 0.91515 0.92440 0.90391 0.90922 0.94655 0.90298 0.95198 0.94284 0.92272 0.90768 0.91786 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.07 16 2 C -0.11 -1.30 4.84 -26.74 -0.13 -1.43 16 3 C -0.12 -1.51 1.68 -91.77 -0.15 -1.66 16 4 H 0.09 1.16 6.49 -51.93 -0.34 0.82 16 5 C -0.14 -1.54 8.56 37.16 0.32 -1.22 16 6 C 0.52 8.96 4.24 -10.98 -0.05 8.91 16 7 O -0.56 -11.43 15.61 5.56 0.09 -11.34 16 8 N -0.59 -10.55 1.66 -172.54 -0.29 -10.83 16 9 C 0.09 1.85 5.88 -3.49 -0.02 1.83 16 10 C 0.18 4.06 2.63 -66.85 -0.18 3.88 16 11 H 0.12 3.02 5.94 -51.93 -0.31 2.71 16 12 C -0.11 -2.44 5.52 -26.53 -0.15 -2.59 16 13 C -0.14 -2.71 5.55 -26.72 -0.15 -2.86 16 14 C -0.12 -2.25 5.57 -26.54 -0.15 -2.39 16 15 C 0.15 2.85 3.62 -67.09 -0.24 2.61 16 16 H 0.08 1.44 8.01 -51.93 -0.42 1.02 16 17 C 0.09 1.51 5.20 -3.74 -0.02 1.49 16 18 N -0.58 -13.38 2.52 -155.71 -0.39 -13.77 16 19 C -0.25 -6.44 9.72 -15.06 -0.15 -6.59 16 20 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 21 C 0.01 0.20 5.13 -17.43 -0.09 0.11 16 22 N -0.90 -24.56 10.65 55.49 0.59 -23.97 16 23 Si 0.90 20.88 29.57 -169.99 -5.03 15.85 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 6.68 -51.93 -0.35 0.12 16 29 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.93 8.03 -51.92 -0.42 0.51 16 32 H 0.06 0.66 7.39 -51.93 -0.38 0.28 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.58 6.83 -51.93 -0.35 0.22 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.62 7.02 -51.93 -0.36 1.26 16 37 H 0.07 1.80 7.84 -51.93 -0.41 1.40 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.48 2.38 -52.44 -0.12 1.35 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.07 0.98 5.10 -51.93 -0.26 0.71 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -28.66 328.41 -8.37 -37.02 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.50 Total: 3.05 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.79 Total: -0.96 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.09 Total: -48.57 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.66 -8.37 -37.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039514702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.487 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds