Wall clock time and date at job start Tue Mar 31 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47627 * 2 1 4 4 H 1.09001 * 109.47189 * 304.99542 * 3 2 1 5 5 C 1.53003 * 109.46932 * 64.99630 * 3 2 1 6 6 C 1.50699 * 109.47409 * 184.99297 * 3 2 1 7 7 O 1.21274 * 120.00047 * 335.26566 * 6 3 2 8 8 N 1.34783 * 119.99844 * 155.26007 * 6 3 2 9 9 C 1.46944 * 120.44160 * 185.09354 * 8 6 3 10 10 C 1.53591 * 108.53327 * 125.75117 * 9 8 6 11 11 H 1.08996 * 110.60058 * 172.15700 * 10 9 8 12 12 C 1.53368 * 108.68966 * 294.35964 * 10 9 8 13 13 C 1.53015 * 109.26962 * 60.29053 * 12 10 9 14 14 C 1.53005 * 109.79557 * 60.57158 * 13 12 10 15 15 C 1.53370 * 109.25629 * 299.42176 * 14 13 12 16 16 H 1.09004 * 111.08785 * 177.82640 * 15 14 13 17 17 C 1.46945 * 120.44187 * 4.81621 * 8 6 3 18 18 N 1.47568 * 107.98559 * 56.37819 * 15 14 13 19 19 C 1.36942 * 121.61245 * 122.23546 * 18 15 14 20 20 H 1.07994 * 119.99713 * 32.05354 * 19 18 15 21 21 C 1.38812 * 119.99817 * 212.05158 * 19 18 15 22 22 N 1.31611 * 120.00170 * 10.32703 * 21 19 18 23 23 Si 1.86800 * 119.99654 * 190.32915 * 21 19 18 24 24 H 1.48498 * 109.47417 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47277 * 120.00144 * 23 21 19 26 26 H 1.48505 * 109.46945 * 240.00027 * 23 21 19 27 27 H 1.08996 * 109.47692 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47424 * 300.00565 * 1 2 3 29 29 H 1.09008 * 109.46512 * 60.00418 * 1 2 3 30 30 H 1.09001 * 109.47424 * 239.99435 * 2 1 3 31 31 H 1.09009 * 109.46873 * 119.99986 * 2 1 3 32 32 H 1.09002 * 109.46827 * 174.77510 * 5 3 2 33 33 H 1.08994 * 109.47164 * 54.77003 * 5 3 2 34 34 H 1.09003 * 109.47174 * 294.76944 * 5 3 2 35 35 H 1.09000 * 109.62576 * 245.46856 * 9 8 6 36 36 H 1.09000 * 109.62803 * 6.03757 * 9 8 6 37 37 H 1.08996 * 109.50880 * 180.22864 * 12 10 9 38 38 H 1.09004 * 109.50293 * 300.35532 * 12 10 9 39 39 H 1.08999 * 109.41482 * 300.47482 * 13 12 10 40 40 H 1.09001 * 109.36150 * 180.63767 * 13 12 10 41 41 H 1.08998 * 109.50785 * 179.48612 * 14 13 12 42 42 H 1.08998 * 109.54423 * 59.37556 * 14 13 12 43 43 H 1.09000 * 109.62602 * 353.95603 * 17 8 6 44 44 H 1.08995 * 109.62045 * 114.52031 * 17 8 6 45 45 H 0.97002 * 120.00194 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9815 -0.8419 5 6 1.6353 2.1265 1.3074 6 6 3.5420 1.4441 -0.1237 7 8 4.1812 0.4786 0.2367 8 7 4.1748 2.5188 -0.6348 9 6 5.6260 2.4892 -0.8636 10 6 5.8971 2.8630 -2.3285 11 1 6.9661 2.9866 -2.5012 12 6 5.3154 1.7678 -3.2309 13 6 3.8070 1.6670 -2.9944 14 6 3.1385 3.0000 -3.3370 15 6 3.7116 4.0999 -2.4347 16 1 3.2826 5.0715 -2.6800 17 6 3.4218 3.7335 -0.9765 18 7 5.1763 4.1188 -2.6135 19 6 5.8347 5.2469 -3.0245 20 1 5.4610 6.2215 -2.7472 21 6 6.9825 5.1378 -3.7974 22 7 7.3256 3.9732 -4.3054 23 14 8.0403 6.6441 -4.1166 24 1 7.4411 7.8222 -3.4395 25 1 9.4075 6.4102 -3.5865 26 1 8.1126 6.8975 -5.5780 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 2.0768 3.1223 1.3482 33 1 1.9913 1.5362 2.1516 34 1 0.5493 2.2084 1.3535 35 1 6.1151 3.2076 -0.2058 36 1 6.0077 1.4877 -0.6647 37 1 5.5041 2.0180 -4.2748 38 1 5.7855 0.8133 -2.9940 39 1 3.6196 1.4261 -1.9480 40 1 3.3937 0.8813 -3.6268 41 1 2.0635 2.9202 -3.1756 42 1 3.3325 3.2476 -4.3806 43 1 2.3546 3.5499 -0.8519 44 1 3.7334 4.5519 -0.3276 45 1 8.1279 3.8968 -4.8453 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039514702.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:26 Heat of formation + Delta-G solvation = -16.548166 kcal Electronic energy + Delta-G solvation = -24588.754616 eV Core-core repulsion = 21413.514397 eV Total energy + Delta-G solvation = -3175.240219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.22054 -39.46443 -36.40645 -35.61121 -34.38361 -33.46724 -32.26523 -30.57584 -28.54020 -27.12996 -26.16337 -25.24144 -23.38108 -22.93203 -22.08100 -20.24339 -19.85205 -18.74361 -17.76609 -16.91821 -16.57858 -16.46892 -15.75468 -15.61532 -15.27074 -15.05323 -14.69304 -14.58629 -14.28444 -14.07477 -13.68201 -13.45263 -13.38658 -13.05253 -13.00218 -12.95360 -12.68623 -12.55920 -12.46234 -12.35040 -12.07099 -11.93194 -11.75344 -11.64396 -11.58908 -11.54002 -11.19124 -11.09761 -10.56902 -10.43085 -9.40517 -8.39676 -7.79539 -5.32823 1.47121 1.50423 1.58757 1.66476 2.10236 2.52717 3.34245 3.51431 3.56003 3.86844 4.04516 4.14542 4.18935 4.25186 4.28714 4.34448 4.40993 4.54605 4.57524 4.63481 4.66691 4.76395 4.79851 4.83788 4.89398 4.93490 5.00888 5.06344 5.07150 5.16590 5.18007 5.24712 5.28401 5.36235 5.41754 5.43914 5.54098 5.58073 5.69019 5.74189 5.87780 6.45363 6.57785 7.17749 7.23657 7.84988 8.45423 9.22872 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032126 B = 0.005416 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.357110 B = 5168.299538 C = 5226.402141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.108 4.108 4 H 0.112 0.888 5 C -0.138 4.138 6 C 0.513 3.487 7 O -0.593 6.593 8 N -0.592 5.592 9 C 0.104 3.896 10 C 0.180 3.820 11 H 0.077 0.923 12 C -0.104 4.104 13 C -0.136 4.136 14 C -0.115 4.115 15 C 0.141 3.859 16 H 0.088 0.912 17 C 0.100 3.900 18 N -0.593 5.593 19 C -0.253 4.253 20 H 0.070 0.930 21 C -0.044 4.044 22 N -0.926 5.926 23 Si 0.962 3.038 24 H -0.265 1.265 25 H -0.297 1.297 26 H -0.297 1.297 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.084 0.916 42 H 0.031 0.969 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.010 -2.446 8.458 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.129 4.129 4 H 0.130 0.870 5 C -0.196 4.196 6 C 0.305 3.695 7 O -0.475 6.475 8 N -0.324 5.324 9 C -0.021 4.021 10 C 0.073 3.927 11 H 0.095 0.905 12 C -0.144 4.144 13 C -0.174 4.174 14 C -0.154 4.154 15 C 0.034 3.966 16 H 0.106 0.894 17 C -0.023 4.023 18 N -0.315 5.315 19 C -0.384 4.384 20 H 0.088 0.912 21 C -0.240 4.240 22 N -0.572 5.572 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.224 1.224 26 H -0.224 1.224 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.050 0.950 43 H 0.135 0.865 44 H 0.088 0.912 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.535 -2.910 8.555 17.114 hybrid contribution 1.649 0.496 -0.886 1.936 sum -12.886 -2.415 7.669 15.189 Atomic orbital electron populations 1.21789 0.92880 1.02530 1.03046 1.21345 0.97516 0.93693 1.01723 1.21510 0.88907 1.00009 1.02488 0.87031 1.21809 1.03739 1.00035 0.93987 1.21209 0.91829 0.81301 0.75195 1.90633 1.69406 1.35916 1.51521 1.48232 1.08158 1.14922 1.61045 1.22110 0.81057 1.00433 0.98506 1.20902 0.97530 0.85342 0.88973 0.90544 1.21630 0.96141 0.96725 0.99867 1.22130 0.95014 0.97107 1.03171 1.21884 0.99289 0.95314 0.98909 1.21443 0.84729 0.97571 0.92841 0.89423 1.22395 0.97072 0.85937 0.96929 1.44507 1.01024 1.08343 1.77657 1.19470 1.07528 0.86758 1.24599 0.91216 1.25822 1.02063 0.98758 0.97364 1.70091 1.25889 1.24484 1.36730 0.85278 0.78466 0.80273 0.76799 1.18971 1.22376 1.22433 0.92126 0.90935 0.91710 0.93561 0.92485 0.91836 0.92979 0.88312 0.92843 0.91510 0.94538 0.95331 0.89149 0.94456 0.89807 0.95043 0.86456 0.91250 0.94453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 71.98 0.70 -1.42 16 2 C -0.10 -2.29 4.84 30.59 0.15 -2.15 16 3 C -0.11 -2.42 1.68 -11.54 -0.02 -2.44 16 4 H 0.11 2.11 6.49 -2.39 -0.02 2.10 16 5 C -0.14 -2.38 8.56 71.98 0.62 -1.77 16 6 C 0.51 16.73 4.24 87.66 0.37 17.10 16 7 O -0.59 -24.11 15.61 -3.01 -0.05 -24.16 16 8 N -0.59 -20.13 1.66 -818.18 -1.36 -21.48 16 9 C 0.10 4.26 5.88 86.49 0.51 4.77 16 10 C 0.18 8.45 2.63 45.11 0.12 8.57 16 11 H 0.08 4.22 5.94 -2.39 -0.01 4.20 16 12 C -0.10 -4.76 5.52 30.72 0.17 -4.59 16 13 C -0.14 -5.12 5.55 30.60 0.17 -4.95 16 14 C -0.11 -3.96 5.57 30.72 0.17 -3.79 16 15 C 0.14 5.06 3.62 44.95 0.16 5.22 16 16 H 0.09 2.99 8.01 -2.38 -0.02 2.97 16 17 C 0.10 2.89 5.20 86.33 0.45 3.34 16 18 N -0.59 -27.48 2.52 -646.54 -1.63 -29.11 16 19 C -0.25 -13.05 9.72 84.03 0.82 -12.23 16 20 H 0.07 3.47 7.85 -2.91 -0.02 3.45 16 21 C -0.04 -2.37 5.13 84.86 0.44 -1.93 16 22 N -0.93 -52.97 10.65 21.65 0.23 -52.74 16 23 Si 0.96 43.79 29.57 68.60 2.03 45.82 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.84 6.68 -2.39 -0.02 0.82 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.40 8.03 -2.38 -0.02 1.38 16 32 H 0.06 1.08 7.39 -2.39 -0.02 1.06 16 33 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 1.12 6.83 -2.39 -0.02 1.10 16 35 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.87 7.02 -2.39 -0.02 2.86 16 37 H 0.04 1.90 7.84 -2.39 -0.02 1.88 16 38 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.09 3.22 2.38 -3.40 -0.01 3.21 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.12 2.41 5.10 -2.39 -0.01 2.40 16 44 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -65.21 328.41 5.00 -60.21 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.96 Total: 17.71 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 4.81 Total: 3.75 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -2.76 Total: -103.33 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -65.21 5.00 -60.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039514702.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.663 kcal (2) G-P(sol) polarization free energy of solvation -65.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds