Wall clock time and date at job start Tue Mar 31 2020 02:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47360 * 2 1 4 4 C 1.50706 * 109.47080 * 119.99204 * 2 1 3 5 5 O 1.21275 * 119.99898 * 333.38302 * 4 2 1 6 6 N 1.34776 * 119.99842 * 153.37507 * 4 2 1 7 7 C 1.48189 * 127.80305 * 5.31485 * 6 4 2 8 8 C 1.54504 * 104.63262 * 140.70207 * 7 6 4 9 9 C 1.53846 * 104.78454 * 23.80753 * 8 7 6 10 10 C 1.48264 * 127.79761 * 185.31622 * 6 4 2 11 11 C 1.52792 * 110.19764 * 118.98442 * 9 8 7 12 12 C 1.53128 * 109.67371 * 61.94709 * 11 9 8 13 13 C 1.53182 * 109.28913 * 60.50018 * 12 11 9 14 14 N 1.46930 * 108.90474 * 304.93535 * 13 12 11 15 15 C 1.36936 * 120.68871 * 234.04571 * 14 13 12 16 16 H 1.08000 * 119.99976 * 31.13835 * 15 14 13 17 17 C 1.38807 * 120.00093 * 211.14614 * 15 14 13 18 18 N 1.31616 * 120.00411 * 10.66533 * 17 15 14 19 19 Si 1.86805 * 119.99958 * 190.66505 * 17 15 14 20 20 H 1.48498 * 109.46984 * 89.99702 * 19 17 15 21 21 H 1.48497 * 109.46951 * 209.99999 * 19 17 15 22 22 H 1.48504 * 109.46880 * 329.99954 * 19 17 15 23 23 C 1.47041 * 118.63098 * 54.02390 * 14 13 12 24 24 H 1.08991 * 109.47564 * 300.00575 * 1 2 3 25 25 H 1.09006 * 109.46709 * 60.00810 * 1 2 3 26 26 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47798 * 239.99182 * 2 1 3 28 28 H 1.09001 * 109.47019 * 55.02378 * 3 2 1 29 29 H 1.08993 * 109.47702 * 175.03112 * 3 2 1 30 30 H 1.09002 * 109.46673 * 295.02885 * 3 2 1 31 31 H 1.09002 * 110.40477 * 21.91372 * 7 6 4 32 32 H 1.08998 * 110.40572 * 259.48778 * 7 6 4 33 33 H 1.09000 * 110.37301 * 264.98342 * 8 7 6 34 34 H 1.08998 * 110.37452 * 142.63431 * 8 7 6 35 35 H 1.09004 * 110.42264 * 100.38415 * 10 6 4 36 36 H 1.08996 * 110.42432 * 337.90425 * 10 6 4 37 37 H 1.08998 * 109.40497 * 301.89110 * 11 9 8 38 38 H 1.09008 * 109.39832 * 182.00285 * 11 9 8 39 39 H 1.09000 * 109.49942 * 300.55803 * 12 11 9 40 40 H 1.08998 * 109.53367 * 180.46570 * 12 11 9 41 41 H 1.09002 * 109.56204 * 185.11354 * 13 12 11 42 42 H 1.08999 * 109.66484 * 64.82270 * 13 12 11 43 43 H 0.97001 * 120.00344 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.58328 * 67.00681 * 23 14 13 45 45 H 1.08998 * 109.58211 * 187.28883 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.3491 -0.7449 2.2320 6 7 3.2407 -1.3070 1.2181 7 6 4.2556 -1.2807 0.1387 8 6 5.6077 -1.1630 0.8770 9 6 5.3386 -1.7297 2.2818 10 6 3.8547 -2.1381 2.2814 11 6 6.2259 -2.9468 2.5385 12 6 7.6988 -2.5312 2.4863 13 6 7.9666 -1.4800 3.5679 14 7 7.0277 -0.3639 3.3899 15 6 7.4844 0.9218 3.2743 16 1 8.4457 1.1148 2.8215 17 6 6.7119 1.9772 3.7393 18 7 5.6465 1.7391 4.4746 19 14 7.1842 3.7355 3.3214 20 1 6.5248 4.1371 2.0529 21 1 6.7455 4.6391 4.4151 22 1 8.6580 3.8280 3.1640 23 6 5.5876 -0.6562 3.3379 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6057 1.9814 0.8421 29 1 3.1263 1.4438 0.0890 30 1 1.7512 1.9299 -0.9312 31 1 4.0997 -0.4177 -0.5086 32 1 4.2182 -2.2032 -0.4407 33 1 5.9153 -0.1193 0.9414 34 1 6.3701 -1.7537 0.3692 35 1 3.7516 -3.1969 2.0436 36 1 3.3993 -1.9180 3.2468 37 1 6.0346 -3.7018 1.7760 38 1 5.9996 -3.3588 3.5220 39 1 7.9235 -2.1103 1.5063 40 1 8.3297 -3.4025 2.6615 41 1 8.9894 -1.1147 3.4765 42 1 7.8240 -1.9233 4.5535 43 1 5.1065 2.4765 4.7992 44 1 5.2524 -1.0160 4.3107 45 1 5.0404 0.2491 3.0748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040080879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:05 Heat of formation + Delta-G solvation = -25.655279 kcal Electronic energy + Delta-G solvation = -23957.601897 eV Core-core repulsion = 20781.966764 eV Total energy + Delta-G solvation = -3175.635133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.08661 -38.42027 -35.69300 -34.27316 -33.04838 -31.05035 -29.87528 -29.17212 -27.14415 -25.91608 -25.27987 -23.18530 -22.39978 -21.85638 -20.44365 -18.78312 -17.81433 -16.99180 -16.58351 -15.50117 -15.21815 -14.86614 -14.51132 -14.07072 -13.68719 -13.55553 -13.37457 -13.17961 -12.67343 -12.61678 -12.37517 -12.32665 -12.14000 -11.94231 -11.81389 -11.50750 -11.09478 -11.03317 -10.98210 -10.93217 -10.71307 -10.64370 -10.34200 -10.12185 -10.08017 -9.77558 -9.60108 -9.38384 -9.30470 -8.47763 -8.31449 -6.58905 -5.75403 -3.23724 2.95926 3.28372 3.36269 3.43271 3.45099 4.48667 4.63279 4.90150 5.05957 5.08329 5.11571 5.34125 5.41678 5.47469 5.49299 5.59943 5.64301 5.68391 5.69084 5.81124 5.83284 5.87165 5.95727 5.99782 6.08990 6.16887 6.24404 6.28675 6.30707 6.32567 6.38966 6.49296 6.53665 6.73148 6.83868 6.89691 6.97083 7.03683 7.40382 7.73688 7.81728 7.92952 8.49765 8.51056 9.24382 9.86383 10.45374 11.31976 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.007378 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.965513 B = 3794.327821 C = 5082.222215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C -0.143 4.143 4 C 0.537 3.463 5 O -0.544 6.544 6 N -0.617 5.617 7 C 0.099 3.901 8 C -0.113 4.113 9 C -0.095 4.095 10 C 0.116 3.884 11 C -0.094 4.094 12 C -0.134 4.134 13 C 0.144 3.856 14 N -0.589 5.589 15 C -0.253 4.253 16 H 0.063 0.937 17 C 0.006 3.994 18 N -0.900 5.900 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.191 3.809 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.015 0.985 43 H 0.254 0.746 44 H 0.015 0.985 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 -7.160 -11.233 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.130 4.130 3 C -0.200 4.200 4 C 0.326 3.674 5 O -0.421 6.421 6 N -0.351 5.351 7 C -0.024 4.024 8 C -0.151 4.151 9 C -0.098 4.098 10 C -0.007 4.007 11 C -0.132 4.132 12 C -0.173 4.173 13 C 0.017 3.983 14 N -0.312 5.312 15 C -0.383 4.383 16 H 0.081 0.919 17 C -0.193 4.193 18 N -0.544 5.544 19 Si 0.730 3.270 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.065 3.935 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.033 0.967 43 H 0.064 0.936 44 H 0.033 0.967 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.455 -6.977 -10.595 13.445 hybrid contribution 0.305 0.872 -0.187 0.943 sum -4.150 -6.104 -10.782 13.067 Atomic orbital electron populations 1.21640 0.92799 1.02218 1.02395 1.21235 0.97811 0.97648 0.96325 1.21749 1.01994 0.93694 1.02600 1.20239 0.79609 0.77924 0.89646 1.90678 1.56506 1.60342 1.34569 1.48988 1.15806 1.50879 1.19386 1.22513 0.88603 1.00948 0.90372 1.22497 0.94499 1.03480 0.94625 1.21915 0.92086 0.97838 0.97962 1.22346 0.93009 0.93122 0.92231 1.21391 0.95487 0.95857 1.00464 1.22043 0.95319 0.98797 1.01158 1.20908 0.94047 0.89011 0.94312 1.43991 1.00819 1.02068 1.84277 1.19123 1.04125 0.82312 1.32750 0.91909 1.25156 0.98604 0.98157 0.97383 1.69966 1.17785 1.30488 1.36131 0.86334 0.78085 0.85071 0.77523 1.21483 1.21717 1.20442 1.20727 0.85358 0.95252 0.92168 0.91402 0.92143 0.92648 0.89572 0.91722 0.91730 0.91709 0.90840 0.91875 0.89542 0.91233 0.92101 0.90039 0.93492 0.92601 0.92198 0.93264 0.93055 0.96669 0.93569 0.96668 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.75 37.16 0.32 -1.27 16 2 C -0.11 -1.44 2.54 -91.77 -0.23 -1.67 16 3 C -0.14 -1.87 9.08 37.16 0.34 -1.53 16 4 C 0.54 9.43 7.00 -10.98 -0.08 9.35 16 5 O -0.54 -11.66 16.37 5.56 0.09 -11.57 16 6 N -0.62 -10.29 3.32 -169.40 -0.56 -10.85 16 7 C 0.10 1.36 6.64 -2.32 -0.02 1.35 16 8 C -0.11 -1.84 5.58 -25.50 -0.14 -1.98 16 9 C -0.10 -1.71 0.69 -153.89 -0.11 -1.82 16 10 C 0.12 2.00 6.15 -2.60 -0.02 1.99 16 11 C -0.09 -1.50 4.46 -26.77 -0.12 -1.62 16 12 C -0.13 -2.20 5.87 -26.57 -0.16 -2.36 16 13 C 0.14 2.95 6.50 -3.71 -0.02 2.92 16 14 N -0.59 -14.33 2.78 -172.57 -0.48 -14.81 16 15 C -0.25 -6.78 9.59 -15.06 -0.14 -6.93 16 16 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 17 C 0.01 0.17 5.05 -17.43 -0.09 0.08 16 18 N -0.90 -26.35 11.05 55.49 0.61 -25.74 16 19 Si 0.90 21.64 29.57 -169.99 -5.03 16.61 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.19 4.49 3.57 -3.93 -0.01 4.47 16 24 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.94 7.47 -51.93 -0.39 0.56 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.91 6.50 -51.93 -0.34 0.58 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.70 7.65 -51.93 -0.40 1.30 16 34 H 0.07 1.02 6.53 -51.93 -0.34 0.68 16 35 H 0.06 0.92 7.85 -51.93 -0.41 0.51 16 36 H 0.08 1.62 7.51 -51.93 -0.39 1.23 16 37 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 39 H 0.06 0.99 6.62 -51.93 -0.34 0.64 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 45 H 0.09 2.45 6.12 -51.93 -0.32 2.13 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -31.18 342.81 -8.57 -39.74 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.90 Total: 0.46 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.47 Total: 0.99 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.43 Total: -51.40 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.18 -8.57 -39.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040080879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.087 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds