Wall clock time and date at job start Tue Mar 31 2020 02:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47360 * 2 1 4 4 C 1.50706 * 109.47080 * 119.99204 * 2 1 3 5 5 O 1.21275 * 119.99898 * 333.38302 * 4 2 1 6 6 N 1.34776 * 119.99842 * 153.37507 * 4 2 1 7 7 C 1.48189 * 127.80305 * 5.31485 * 6 4 2 8 8 C 1.54504 * 104.63262 * 140.70207 * 7 6 4 9 9 C 1.53846 * 104.78454 * 23.80753 * 8 7 6 10 10 C 1.48264 * 127.79761 * 185.31622 * 6 4 2 11 11 C 1.52792 * 110.19764 * 118.98442 * 9 8 7 12 12 C 1.53128 * 109.67371 * 61.94709 * 11 9 8 13 13 C 1.53182 * 109.28913 * 60.50018 * 12 11 9 14 14 N 1.46930 * 108.90474 * 304.93535 * 13 12 11 15 15 C 1.36936 * 120.68871 * 234.04571 * 14 13 12 16 16 H 1.08000 * 119.99976 * 31.13835 * 15 14 13 17 17 C 1.38807 * 120.00093 * 211.14614 * 15 14 13 18 18 N 1.31616 * 120.00411 * 10.66533 * 17 15 14 19 19 Si 1.86805 * 119.99958 * 190.66505 * 17 15 14 20 20 H 1.48498 * 109.46984 * 89.99702 * 19 17 15 21 21 H 1.48497 * 109.46951 * 209.99999 * 19 17 15 22 22 H 1.48504 * 109.46880 * 329.99954 * 19 17 15 23 23 C 1.47041 * 118.63098 * 54.02390 * 14 13 12 24 24 H 1.08991 * 109.47564 * 300.00575 * 1 2 3 25 25 H 1.09006 * 109.46709 * 60.00810 * 1 2 3 26 26 H 1.08998 * 109.47048 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47798 * 239.99182 * 2 1 3 28 28 H 1.09001 * 109.47019 * 55.02378 * 3 2 1 29 29 H 1.08993 * 109.47702 * 175.03112 * 3 2 1 30 30 H 1.09002 * 109.46673 * 295.02885 * 3 2 1 31 31 H 1.09002 * 110.40477 * 21.91372 * 7 6 4 32 32 H 1.08998 * 110.40572 * 259.48778 * 7 6 4 33 33 H 1.09000 * 110.37301 * 264.98342 * 8 7 6 34 34 H 1.08998 * 110.37452 * 142.63431 * 8 7 6 35 35 H 1.09004 * 110.42264 * 100.38415 * 10 6 4 36 36 H 1.08996 * 110.42432 * 337.90425 * 10 6 4 37 37 H 1.08998 * 109.40497 * 301.89110 * 11 9 8 38 38 H 1.09008 * 109.39832 * 182.00285 * 11 9 8 39 39 H 1.09000 * 109.49942 * 300.55803 * 12 11 9 40 40 H 1.08998 * 109.53367 * 180.46570 * 12 11 9 41 41 H 1.09002 * 109.56204 * 185.11354 * 13 12 11 42 42 H 1.08999 * 109.66484 * 64.82270 * 13 12 11 43 43 H 0.97001 * 120.00344 * 180.02562 * 18 17 15 44 44 H 1.08997 * 109.58328 * 67.00681 * 23 14 13 45 45 H 1.08998 * 109.58211 * 187.28883 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.3491 -0.7449 2.2320 6 7 3.2407 -1.3070 1.2181 7 6 4.2556 -1.2807 0.1387 8 6 5.6077 -1.1630 0.8770 9 6 5.3386 -1.7297 2.2818 10 6 3.8547 -2.1381 2.2814 11 6 6.2259 -2.9468 2.5385 12 6 7.6988 -2.5312 2.4863 13 6 7.9666 -1.4800 3.5679 14 7 7.0277 -0.3639 3.3899 15 6 7.4844 0.9218 3.2743 16 1 8.4457 1.1148 2.8215 17 6 6.7119 1.9772 3.7393 18 7 5.6465 1.7391 4.4746 19 14 7.1842 3.7355 3.3214 20 1 6.5248 4.1371 2.0529 21 1 6.7455 4.6391 4.4151 22 1 8.6580 3.8280 3.1640 23 6 5.5876 -0.6562 3.3379 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.6057 1.9814 0.8421 29 1 3.1263 1.4438 0.0890 30 1 1.7512 1.9299 -0.9312 31 1 4.0997 -0.4177 -0.5086 32 1 4.2182 -2.2032 -0.4407 33 1 5.9153 -0.1193 0.9414 34 1 6.3701 -1.7537 0.3692 35 1 3.7516 -3.1969 2.0436 36 1 3.3993 -1.9180 3.2468 37 1 6.0346 -3.7018 1.7760 38 1 5.9996 -3.3588 3.5220 39 1 7.9235 -2.1103 1.5063 40 1 8.3297 -3.4025 2.6615 41 1 8.9894 -1.1147 3.4765 42 1 7.8240 -1.9233 4.5535 43 1 5.1065 2.4765 4.7992 44 1 5.2524 -1.0160 4.3107 45 1 5.0404 0.2491 3.0748 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040080879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:04 Heat of formation + Delta-G solvation = -44.808870 kcal Electronic energy + Delta-G solvation = -23958.432459 eV Core-core repulsion = 20781.966764 eV Total energy + Delta-G solvation = -3176.465695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46208 -39.88603 -37.27267 -35.45511 -34.83068 -32.66823 -31.64217 -30.48340 -28.16597 -27.48852 -27.11131 -24.52060 -23.96540 -23.24404 -21.98263 -20.11617 -19.35719 -18.58643 -18.10373 -16.86186 -16.83593 -16.49868 -15.78782 -15.72348 -15.27237 -15.06421 -14.79122 -14.54919 -14.19195 -13.92123 -13.86549 -13.63191 -13.44588 -13.31031 -13.00963 -12.86259 -12.77352 -12.75346 -12.43983 -12.28576 -12.13868 -12.07224 -12.02264 -11.73975 -11.65723 -11.33021 -11.14878 -11.01196 -10.70132 -10.55783 -9.66557 -8.61767 -7.86016 -5.37340 1.42230 1.42741 1.52434 1.61892 2.04070 2.48166 3.27529 3.43148 3.65683 3.80091 3.89382 3.95089 4.02348 4.07916 4.30546 4.36332 4.37360 4.46027 4.50088 4.65281 4.68605 4.70564 4.78089 4.81290 4.87715 4.88660 4.92215 4.94081 5.03340 5.08045 5.18334 5.22171 5.24652 5.28832 5.31876 5.42544 5.47014 5.56083 5.61756 5.74409 5.79973 6.39966 6.64157 7.15175 7.17381 7.87191 8.40299 9.18383 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.007378 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.965513 B = 3794.327821 C = 5082.222215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.140 4.140 4 C 0.522 3.478 5 O -0.598 6.598 6 N -0.622 5.622 7 C 0.103 3.897 8 C -0.106 4.106 9 C -0.088 4.088 10 C 0.116 3.884 11 C -0.090 4.090 12 C -0.121 4.121 13 C 0.135 3.865 14 N -0.605 5.605 15 C -0.252 4.252 16 H 0.069 0.931 17 C -0.052 4.052 18 N -0.939 5.939 19 Si 0.962 3.038 20 H -0.283 1.283 21 H -0.301 1.301 22 H -0.263 1.263 23 C 0.207 3.793 24 H 0.040 0.960 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.123 0.877 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.039 0.961 37 H 0.091 0.909 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.003 0.997 43 H 0.244 0.756 44 H -0.031 1.031 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 -8.863 -15.133 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.122 4.122 3 C -0.197 4.197 4 C 0.313 3.687 5 O -0.479 6.479 6 N -0.355 5.355 7 C -0.019 4.019 8 C -0.145 4.145 9 C -0.091 4.091 10 C -0.007 4.007 11 C -0.128 4.128 12 C -0.160 4.160 13 C 0.010 3.990 14 N -0.328 5.328 15 C -0.382 4.382 16 H 0.087 0.913 17 C -0.247 4.247 18 N -0.585 5.585 19 Si 0.791 3.209 20 H -0.210 1.210 21 H -0.228 1.228 22 H -0.188 1.188 23 C 0.081 3.919 24 H 0.059 0.941 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.141 0.859 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.021 0.979 43 H 0.053 0.947 44 H -0.013 1.013 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.348 -8.709 -14.537 17.274 hybrid contribution 0.051 1.380 1.118 1.777 sum -3.297 -7.329 -13.418 15.641 Atomic orbital electron populations 1.21641 0.91893 1.02468 1.02734 1.21326 0.98520 0.97129 0.95192 1.21748 1.00706 0.93843 1.03439 1.21229 0.79512 0.77467 0.90496 1.90646 1.58171 1.62246 1.36872 1.49193 1.16095 1.50210 1.19969 1.22732 0.85766 1.03942 0.89454 1.22399 0.96969 1.01280 0.93809 1.21708 0.93248 0.97085 0.97054 1.22314 0.92177 0.95151 0.91056 1.21410 0.94430 0.95390 1.01592 1.21917 0.96224 0.98375 0.99452 1.21132 0.93224 0.89057 0.95607 1.44250 1.01582 1.02511 1.84489 1.19474 1.03904 0.83606 1.31221 0.91333 1.25912 0.98845 1.02035 0.97912 1.70190 1.19263 1.30817 1.38226 0.85337 0.78481 0.80309 0.76823 1.20983 1.22812 1.18758 1.20348 0.84639 0.95068 0.91834 0.94065 0.88721 0.92490 0.85889 0.94348 0.93326 0.87964 0.89211 0.87489 0.93605 0.88202 0.88482 0.94273 0.89072 0.93405 0.91390 0.89799 0.92932 0.97900 0.94704 1.01317 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.75 71.98 0.63 -2.28 16 2 C -0.10 -2.48 2.54 -11.54 -0.03 -2.51 16 3 C -0.14 -3.51 9.08 71.98 0.65 -2.86 16 4 C 0.52 18.46 7.00 87.66 0.61 19.08 16 5 O -0.60 -27.10 16.37 -3.02 -0.05 -27.15 16 6 N -0.62 -20.19 3.32 -808.25 -2.68 -22.88 16 7 C 0.10 2.46 6.64 86.57 0.57 3.04 16 8 C -0.11 -3.22 5.58 31.39 0.18 -3.05 16 9 C -0.09 -3.12 0.69 -51.78 -0.04 -3.16 16 10 C 0.12 4.00 6.15 86.35 0.53 4.53 16 11 C -0.09 -2.60 4.46 30.57 0.14 -2.47 16 12 C -0.12 -3.57 5.87 30.70 0.18 -3.39 16 13 C 0.13 5.48 6.50 86.36 0.56 6.04 16 14 N -0.61 -30.28 2.78 -699.88 -1.94 -32.22 16 15 C -0.25 -13.80 9.59 84.03 0.81 -13.00 16 16 H 0.07 3.62 7.85 -2.91 -0.02 3.60 16 17 C -0.05 -2.98 5.05 84.86 0.43 -2.55 16 18 N -0.94 -58.60 11.05 21.65 0.24 -58.36 16 19 Si 0.96 45.82 29.57 68.60 2.03 47.85 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 21 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.21 10.31 3.57 86.16 0.31 10.61 16 24 H 0.04 1.13 7.86 -2.39 -0.02 1.11 16 25 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.12 2.14 7.47 -2.39 -0.02 2.13 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.36 7.38 -2.39 -0.02 1.34 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.09 1.90 6.50 -2.39 -0.02 1.88 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.78 7.65 -2.39 -0.02 1.76 16 34 H 0.10 2.43 6.53 -2.39 -0.02 2.42 16 35 H 0.10 2.65 7.85 -2.38 -0.02 2.64 16 36 H 0.04 1.66 7.51 -2.39 -0.02 1.64 16 37 H 0.09 1.94 8.13 -2.39 -0.02 1.92 16 38 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.07 1.94 6.62 -2.39 -0.02 1.92 16 40 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 44 H -0.03 -1.78 8.09 -2.39 -0.02 -1.80 16 45 H 0.04 2.60 6.12 -2.39 -0.01 2.58 16 Total: -1.00 -75.96 342.81 4.07 -71.90 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.94 Total: 12.83 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 5.53 Total: 8.05 kcal Atomic # 7 Polarization: -109.07 SS G_CDS: -4.39 Total: -113.46 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.05 Total: -27.15 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -75.96 4.07 -71.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040080879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.086 kcal (2) G-P(sol) polarization free energy of solvation -75.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds