Wall clock time and date at job start Tue Mar 31 2020 02:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46900 * 2 1 4 4 C 1.50695 * 109.47326 * 119.99918 * 2 1 3 5 5 O 1.21276 * 120.00469 * 325.66207 * 4 2 1 6 6 N 1.34783 * 119.99761 * 145.66470 * 4 2 1 7 7 C 1.48187 * 127.80209 * 5.12959 * 6 4 2 8 8 C 1.54504 * 104.63096 * 140.73433 * 7 6 4 9 9 C 1.53844 * 104.79233 * 23.79773 * 8 7 6 10 10 C 1.48255 * 127.79967 * 185.16762 * 6 4 2 11 11 C 1.52484 * 110.21414 * 240.95959 * 9 8 7 12 12 C 1.53125 * 109.65682 * 178.08969 * 11 9 8 13 13 C 1.52759 * 109.36209 * 60.36743 * 12 11 9 14 14 N 1.46930 * 109.08120 * 305.08292 * 13 12 11 15 15 C 1.36934 * 120.67527 * 234.05580 * 14 13 12 16 16 H 1.07999 * 120.00395 * 147.54193 * 15 14 13 17 17 C 1.38819 * 119.99985 * 327.81649 * 15 14 13 18 18 N 1.31614 * 119.99941 * 167.61053 * 17 15 14 19 19 Si 1.86800 * 119.99807 * 347.60720 * 17 15 14 20 20 H 1.48505 * 109.46987 * 86.07148 * 19 17 15 21 21 H 1.48498 * 109.47080 * 206.06956 * 19 17 15 22 22 H 1.48500 * 109.47172 * 326.07281 * 19 17 15 23 23 C 1.47025 * 118.65139 * 53.78380 * 14 13 12 24 24 H 1.08996 * 109.47586 * 299.99548 * 1 2 3 25 25 H 1.08995 * 109.47373 * 60.00124 * 1 2 3 26 26 H 1.09003 * 109.46741 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47210 * 240.00281 * 2 1 3 28 28 H 1.08996 * 109.46945 * 184.80737 * 3 2 1 29 29 H 1.08997 * 109.46816 * 304.80921 * 3 2 1 30 30 H 1.08996 * 109.46829 * 64.80393 * 3 2 1 31 31 H 1.08998 * 110.40601 * 21.94782 * 7 6 4 32 32 H 1.09000 * 110.40283 * 259.52161 * 7 6 4 33 33 H 1.08999 * 110.37853 * 264.97345 * 8 7 6 34 34 H 1.08996 * 110.46738 * 142.67199 * 8 7 6 35 35 H 1.08998 * 110.42133 * 100.36268 * 10 6 4 36 36 H 1.09006 * 110.42836 * 337.88561 * 10 6 4 37 37 H 1.09003 * 109.44052 * 298.14789 * 11 9 8 38 38 H 1.08998 * 109.43655 * 58.07118 * 11 9 8 39 39 H 1.08991 * 109.49850 * 180.43469 * 12 11 9 40 40 H 1.08999 * 109.49573 * 300.54657 * 12 11 9 41 41 H 1.08996 * 109.49307 * 185.18359 * 13 12 11 42 42 H 1.08994 * 109.42056 * 64.94049 * 13 12 11 43 43 H 0.97004 * 120.00125 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.57727 * 67.32637 * 23 14 13 45 45 H 1.08998 * 109.57463 * 187.58390 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.4169 -0.6277 2.2722 6 7 3.1657 -1.4375 1.1732 7 6 4.1024 -1.5713 0.0327 8 6 5.5060 -1.5730 0.6785 9 6 5.2726 -2.0444 2.1243 10 6 3.7565 -2.2848 2.2367 11 6 5.7086 -0.9637 3.1077 12 6 5.4269 -1.4266 4.5399 13 6 6.2116 -2.7065 4.8221 14 7 5.8814 -3.7078 3.7987 15 6 5.4381 -4.9529 4.1570 16 1 4.7350 -5.4777 3.5273 17 6 5.8881 -5.5382 5.3326 18 7 5.2906 -6.6121 5.8037 19 14 7.3417 -4.8016 6.2458 20 1 6.8630 -3.7306 7.1564 21 1 8.0163 -5.8605 7.0386 22 1 8.3012 -4.2279 5.2683 23 6 6.0308 -3.3438 2.3821 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1265 1.4438 -0.0861 29 1 1.6079 1.9806 -0.8438 30 1 1.7486 1.9309 0.9299 31 1 3.9976 -0.7253 -0.6464 32 1 3.9262 -2.5082 -0.4959 33 1 5.9286 -0.5683 0.6707 34 1 6.1654 -2.2655 0.1555 35 1 3.5237 -3.3348 2.0597 36 1 3.3936 -1.9737 3.2164 37 1 6.7759 -0.7758 2.9905 38 1 5.1547 -0.0465 2.9079 39 1 5.7324 -0.6493 5.2401 40 1 4.3611 -1.6231 4.6556 41 1 5.9425 -3.0884 5.8068 42 1 7.2796 -2.4912 4.7910 43 1 5.6053 -7.0214 6.6249 44 1 7.0865 -3.2026 2.1507 45 1 5.6226 -4.1372 1.7562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040080880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:09 Heat of formation + Delta-G solvation = -18.702679 kcal Electronic energy + Delta-G solvation = -23653.710859 eV Core-core repulsion = 20478.377214 eV Total energy + Delta-G solvation = -3175.333646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.36765 -38.68732 -36.05824 -34.47060 -32.99218 -31.41881 -30.85584 -29.06872 -27.38565 -26.38021 -25.32920 -23.72331 -22.47365 -21.90847 -20.90067 -18.73547 -18.25896 -17.28730 -16.68691 -15.77882 -15.37809 -15.34905 -14.65362 -14.27204 -14.03012 -13.66487 -13.64862 -13.32180 -13.16890 -12.96597 -12.69241 -12.39239 -12.23824 -12.12287 -11.96416 -11.73124 -11.63420 -11.37331 -11.28494 -11.17101 -10.94290 -10.86566 -10.49083 -10.43409 -9.96931 -9.80389 -9.58558 -9.54784 -9.41808 -8.59606 -8.51095 -6.88979 -5.91912 -3.35984 2.75714 3.09677 3.32546 3.47608 3.50742 4.39872 4.53425 4.65964 4.70924 4.83655 4.87404 4.97850 5.11539 5.20824 5.33092 5.33670 5.42274 5.43678 5.53020 5.55631 5.61731 5.65285 5.71643 5.81232 5.91179 5.96276 5.98129 5.99915 6.05267 6.10877 6.20497 6.23127 6.39232 6.41373 6.52461 6.55978 6.63299 6.70123 6.77566 6.98912 7.74216 8.01906 8.31586 8.35762 8.94722 9.72732 10.12019 11.24129 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.004828 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.816726 B = 5798.555606 C = 6009.982463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C -0.139 4.139 4 C 0.534 3.466 5 O -0.542 6.542 6 N -0.624 5.624 7 C 0.101 3.899 8 C -0.125 4.125 9 C -0.088 4.088 10 C 0.123 3.877 11 C -0.092 4.092 12 C -0.140 4.140 13 C 0.120 3.880 14 N -0.606 5.606 15 C -0.260 4.260 16 H 0.084 0.916 17 C 0.025 3.975 18 N -0.914 5.914 19 Si 0.896 3.104 20 H -0.287 1.287 21 H -0.306 1.306 22 H -0.272 1.272 23 C 0.165 3.835 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.025 0.975 43 H 0.263 0.737 44 H 0.027 0.973 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 14.731 -14.542 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.323 3.677 5 O -0.419 6.419 6 N -0.358 5.358 7 C -0.022 4.022 8 C -0.164 4.164 9 C -0.090 4.090 10 C 0.002 3.998 11 C -0.129 4.129 12 C -0.179 4.179 13 C -0.005 4.005 14 N -0.329 5.329 15 C -0.388 4.388 16 H 0.101 0.899 17 C -0.174 4.174 18 N -0.557 5.557 19 Si 0.727 3.273 20 H -0.215 1.215 21 H -0.234 1.234 22 H -0.197 1.197 23 C 0.039 3.961 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.042 0.958 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.450 14.667 -13.840 20.314 hybrid contribution 0.885 0.279 0.593 1.101 sum -1.565 14.947 -13.246 20.033 Atomic orbital electron populations 1.21663 0.92601 1.02558 1.02493 1.21251 0.98050 0.97406 0.96481 1.21717 1.01137 0.93967 1.02875 1.20255 0.79125 0.78169 0.90161 1.90701 1.56901 1.62296 1.32027 1.49209 1.23052 1.47048 1.16472 1.22415 0.89021 1.01518 0.89275 1.22565 0.95916 1.01972 0.95921 1.21638 0.95462 0.98268 0.93680 1.22426 0.91313 0.94166 0.91907 1.21332 1.00130 0.96490 0.94983 1.22032 1.01834 0.98314 0.95677 1.21362 0.95955 0.89136 0.94094 1.44317 1.78141 1.10896 0.99585 1.18878 1.20633 0.91494 1.07797 0.89878 1.25368 0.98075 0.95678 0.98301 1.69762 1.41464 1.22340 1.22155 0.86837 0.84197 0.76861 0.79364 1.21520 1.23447 1.19672 1.20913 0.96009 0.92567 0.86656 0.91375 0.91986 0.92413 0.89524 0.92308 0.91527 0.91851 0.90780 0.91034 0.91184 0.90061 0.90643 0.89503 0.92427 0.93168 0.92832 0.91484 0.90939 0.95752 0.92746 0.95560 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.84 37.16 0.33 -1.04 16 2 C -0.11 -1.17 2.70 -91.77 -0.25 -1.41 16 3 C -0.14 -1.24 9.18 37.16 0.34 -0.90 16 4 C 0.53 8.08 6.91 -10.98 -0.08 8.01 16 5 O -0.54 -10.56 16.52 5.56 0.09 -10.47 16 6 N -0.62 -8.99 3.32 -169.40 -0.56 -9.55 16 7 C 0.10 1.07 6.59 -2.32 -0.02 1.06 16 8 C -0.12 -1.42 6.29 -25.50 -0.16 -1.58 16 9 C -0.09 -1.36 0.68 -154.04 -0.11 -1.46 16 10 C 0.12 2.12 5.81 -2.60 -0.02 2.10 16 11 C -0.09 -1.44 4.48 -26.93 -0.12 -1.56 16 12 C -0.14 -2.55 5.87 -26.79 -0.16 -2.71 16 13 C 0.12 2.61 4.11 -3.93 -0.02 2.59 16 14 N -0.61 -14.00 2.58 -172.84 -0.45 -14.45 16 15 C -0.26 -7.15 10.06 -15.06 -0.15 -7.30 16 16 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 17 C 0.02 0.71 5.35 -17.43 -0.09 0.62 16 18 N -0.91 -28.17 13.97 55.49 0.78 -27.39 16 19 Si 0.90 22.68 24.25 -169.99 -4.12 18.55 16 20 H -0.29 -7.04 6.42 56.52 0.36 -6.68 16 21 H -0.31 -7.90 7.11 56.52 0.40 -7.49 16 22 H -0.27 -6.71 6.58 56.52 0.37 -6.33 16 23 C 0.17 3.06 4.90 -3.94 -0.02 3.04 16 24 H 0.07 0.78 7.85 -51.93 -0.41 0.38 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.75 7.05 -51.93 -0.37 0.38 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.61 7.17 -51.93 -0.37 0.23 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.73 7.70 -51.93 -0.40 0.33 16 34 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 35 H 0.08 1.41 7.73 -51.93 -0.40 1.01 16 36 H 0.09 1.75 5.60 -51.93 -0.29 1.46 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.33 6.21 -51.93 -0.32 1.01 16 41 H 0.07 1.75 4.36 -51.93 -0.23 1.52 16 42 H 0.02 0.53 6.95 -51.93 -0.36 0.17 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 1.20 7.77 -51.93 -0.40 0.80 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -32.57 336.39 -7.51 -40.07 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.81 Total: -1.28 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.51 Total: -0.55 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.23 Total: -51.40 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.12 Total: 18.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.57 -7.51 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040080880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.369 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds