Wall clock time and date at job start Tue Mar 31 2020 02:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46900 * 2 1 4 4 C 1.50695 * 109.47326 * 119.99918 * 2 1 3 5 5 O 1.21276 * 120.00469 * 325.66207 * 4 2 1 6 6 N 1.34783 * 119.99761 * 145.66470 * 4 2 1 7 7 C 1.48187 * 127.80209 * 5.12959 * 6 4 2 8 8 C 1.54504 * 104.63096 * 140.73433 * 7 6 4 9 9 C 1.53844 * 104.79233 * 23.79773 * 8 7 6 10 10 C 1.48255 * 127.79967 * 185.16762 * 6 4 2 11 11 C 1.52484 * 110.21414 * 240.95959 * 9 8 7 12 12 C 1.53125 * 109.65682 * 178.08969 * 11 9 8 13 13 C 1.52759 * 109.36209 * 60.36743 * 12 11 9 14 14 N 1.46930 * 109.08120 * 305.08292 * 13 12 11 15 15 C 1.36934 * 120.67527 * 234.05580 * 14 13 12 16 16 H 1.07999 * 120.00395 * 147.54193 * 15 14 13 17 17 C 1.38819 * 119.99985 * 327.81649 * 15 14 13 18 18 N 1.31614 * 119.99941 * 167.61053 * 17 15 14 19 19 Si 1.86800 * 119.99807 * 347.60720 * 17 15 14 20 20 H 1.48505 * 109.46987 * 86.07148 * 19 17 15 21 21 H 1.48498 * 109.47080 * 206.06956 * 19 17 15 22 22 H 1.48500 * 109.47172 * 326.07281 * 19 17 15 23 23 C 1.47025 * 118.65139 * 53.78380 * 14 13 12 24 24 H 1.08996 * 109.47586 * 299.99548 * 1 2 3 25 25 H 1.08995 * 109.47373 * 60.00124 * 1 2 3 26 26 H 1.09003 * 109.46741 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47210 * 240.00281 * 2 1 3 28 28 H 1.08996 * 109.46945 * 184.80737 * 3 2 1 29 29 H 1.08997 * 109.46816 * 304.80921 * 3 2 1 30 30 H 1.08996 * 109.46829 * 64.80393 * 3 2 1 31 31 H 1.08998 * 110.40601 * 21.94782 * 7 6 4 32 32 H 1.09000 * 110.40283 * 259.52161 * 7 6 4 33 33 H 1.08999 * 110.37853 * 264.97345 * 8 7 6 34 34 H 1.08996 * 110.46738 * 142.67199 * 8 7 6 35 35 H 1.08998 * 110.42133 * 100.36268 * 10 6 4 36 36 H 1.09006 * 110.42836 * 337.88561 * 10 6 4 37 37 H 1.09003 * 109.44052 * 298.14789 * 11 9 8 38 38 H 1.08998 * 109.43655 * 58.07118 * 11 9 8 39 39 H 1.08991 * 109.49850 * 180.43469 * 12 11 9 40 40 H 1.08999 * 109.49573 * 300.54657 * 12 11 9 41 41 H 1.08996 * 109.49307 * 185.18359 * 13 12 11 42 42 H 1.08994 * 109.42056 * 64.94049 * 13 12 11 43 43 H 0.97004 * 120.00125 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.57727 * 67.32637 * 23 14 13 45 45 H 1.08998 * 109.57463 * 187.58390 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.4169 -0.6277 2.2722 6 7 3.1657 -1.4375 1.1732 7 6 4.1024 -1.5713 0.0327 8 6 5.5060 -1.5730 0.6785 9 6 5.2726 -2.0444 2.1243 10 6 3.7565 -2.2848 2.2367 11 6 5.7086 -0.9637 3.1077 12 6 5.4269 -1.4266 4.5399 13 6 6.2116 -2.7065 4.8221 14 7 5.8814 -3.7078 3.7987 15 6 5.4381 -4.9529 4.1570 16 1 4.7350 -5.4777 3.5273 17 6 5.8881 -5.5382 5.3326 18 7 5.2906 -6.6121 5.8037 19 14 7.3417 -4.8016 6.2458 20 1 6.8630 -3.7306 7.1564 21 1 8.0163 -5.8605 7.0386 22 1 8.3012 -4.2279 5.2683 23 6 6.0308 -3.3438 2.3821 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1265 1.4438 -0.0861 29 1 1.6079 1.9806 -0.8438 30 1 1.7486 1.9309 0.9299 31 1 3.9976 -0.7253 -0.6464 32 1 3.9262 -2.5082 -0.4959 33 1 5.9286 -0.5683 0.6707 34 1 6.1654 -2.2655 0.1555 35 1 3.5237 -3.3348 2.0597 36 1 3.3936 -1.9737 3.2164 37 1 6.7759 -0.7758 2.9905 38 1 5.1547 -0.0465 2.9079 39 1 5.7324 -0.6493 5.2401 40 1 4.3611 -1.6231 4.6556 41 1 5.9425 -3.0884 5.8068 42 1 7.2796 -2.4912 4.7910 43 1 5.6053 -7.0214 6.6249 44 1 7.0865 -3.2026 2.1507 45 1 5.6226 -4.1372 1.7562 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040080880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:08 Heat of formation + Delta-G solvation = -40.402564 kcal Electronic energy + Delta-G solvation = -23654.651837 eV Core-core repulsion = 20478.377214 eV Total energy + Delta-G solvation = -3176.274623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58011 -39.99835 -37.53352 -35.43338 -34.73528 -32.91132 -32.64590 -30.21604 -28.16132 -27.69847 -27.16057 -24.95062 -23.82216 -23.25876 -22.35621 -19.80646 -19.62310 -18.72998 -18.31302 -17.30810 -16.93599 -16.50568 -15.89205 -15.62133 -15.41987 -15.25551 -14.90445 -14.69442 -14.49588 -14.26393 -13.80752 -13.67602 -13.49591 -13.41441 -13.17112 -13.02531 -12.86675 -12.77842 -12.53954 -12.30842 -12.10524 -12.08536 -12.01296 -11.79447 -11.62123 -11.51540 -11.22596 -11.10060 -10.74129 -10.63331 -9.71648 -8.83279 -8.15555 -5.55083 1.30029 1.39108 1.49540 1.61182 1.99644 2.41576 3.09238 3.28252 3.46898 3.73573 3.75662 3.80155 3.95449 4.10255 4.18580 4.19193 4.31543 4.42867 4.43161 4.51781 4.55102 4.68033 4.74671 4.75796 4.77527 4.83346 4.86787 4.92463 4.97497 5.00343 5.03399 5.05260 5.07800 5.17436 5.22964 5.26853 5.30323 5.32350 5.50119 5.53571 5.89910 6.14110 6.63919 6.93143 7.16131 7.61842 8.04271 9.04576 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028111 B = 0.004828 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.816726 B = 5798.555606 C = 6009.982463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C -0.135 4.135 4 C 0.523 3.477 5 O -0.600 6.600 6 N -0.623 5.623 7 C 0.098 3.902 8 C -0.115 4.115 9 C -0.081 4.081 10 C 0.126 3.874 11 C -0.085 4.085 12 C -0.135 4.135 13 C 0.116 3.884 14 N -0.620 5.620 15 C -0.243 4.243 16 H 0.046 0.954 17 C -0.038 4.038 18 N -0.966 5.966 19 Si 0.960 3.040 20 H -0.278 1.278 21 H -0.314 1.314 22 H -0.254 1.254 23 C 0.161 3.839 24 H 0.045 0.955 25 H 0.096 0.904 26 H 0.045 0.955 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.041 0.959 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.260 0.740 44 H 0.048 0.952 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 17.951 -17.711 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.193 4.193 4 C 0.314 3.686 5 O -0.481 6.481 6 N -0.356 5.356 7 C -0.024 4.024 8 C -0.154 4.154 9 C -0.083 4.083 10 C 0.003 3.997 11 C -0.123 4.123 12 C -0.174 4.174 13 C -0.008 4.008 14 N -0.345 5.345 15 C -0.373 4.373 16 H 0.064 0.936 17 C -0.232 4.232 18 N -0.613 5.613 19 Si 0.790 3.210 20 H -0.205 1.205 21 H -0.243 1.243 22 H -0.178 1.178 23 C 0.037 3.963 24 H 0.064 0.936 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.136 0.864 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.389 17.937 -17.079 24.770 hybrid contribution 0.130 -0.748 1.527 1.705 sum -0.259 17.188 -15.552 23.181 Atomic orbital electron populations 1.21694 0.92635 1.01985 1.03040 1.21346 0.97970 0.98245 0.94726 1.21734 1.02047 0.92480 1.03029 1.21313 0.78534 0.77719 0.91019 1.90672 1.58535 1.64354 1.34574 1.49332 1.23462 1.45951 1.16836 1.22727 0.87410 1.03860 0.88359 1.22576 0.96796 1.03636 0.92351 1.21515 0.93048 0.96747 0.97031 1.22118 0.93309 0.93085 0.91215 1.21315 1.01675 0.96590 0.92677 1.21951 0.99530 0.97302 0.98633 1.21387 0.97135 0.89988 0.92339 1.44441 1.78252 1.09713 1.02052 1.18789 1.18867 0.92901 1.06721 0.93635 1.26063 1.00958 0.96487 0.99734 1.69922 1.43503 1.24731 1.23102 0.85780 0.80824 0.76014 0.78427 1.20462 1.24348 1.17785 1.21128 0.97559 0.93968 0.83679 0.93625 0.88563 0.93628 0.86444 0.91089 0.88586 0.94016 0.86846 0.90036 0.88767 0.88121 0.93541 0.93471 0.90050 0.91999 0.90545 0.94294 0.93870 0.94164 0.93076 0.93372 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.84 71.98 0.64 -1.89 16 2 C -0.10 -1.86 2.70 -11.54 -0.03 -1.89 16 3 C -0.14 -1.91 9.18 71.99 0.66 -1.25 16 4 C 0.52 15.50 6.91 87.65 0.61 16.11 16 5 O -0.60 -24.42 16.52 -3.02 -0.05 -24.47 16 6 N -0.62 -17.12 3.32 -808.26 -2.68 -19.80 16 7 C 0.10 1.66 6.59 86.57 0.57 2.23 16 8 C -0.12 -2.07 6.29 31.39 0.20 -1.87 16 9 C -0.08 -2.33 0.68 -51.88 -0.04 -2.36 16 10 C 0.13 4.41 5.81 86.35 0.50 4.91 16 11 C -0.09 -2.41 4.48 30.46 0.14 -2.28 16 12 C -0.14 -4.82 5.87 30.56 0.18 -4.64 16 13 C 0.12 4.96 4.11 86.22 0.35 5.31 16 14 N -0.62 -28.79 2.58 -700.75 -1.81 -30.59 16 15 C -0.24 -13.94 10.06 84.04 0.85 -13.09 16 16 H 0.05 2.89 8.06 -2.91 -0.02 2.87 16 17 C -0.04 -2.29 5.35 84.86 0.45 -1.83 16 18 N -0.97 -62.44 13.97 21.65 0.30 -62.14 16 19 Si 0.96 47.68 24.25 68.60 1.66 49.35 16 20 H -0.28 -13.20 6.42 99.48 0.64 -12.56 16 21 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 22 H -0.25 -11.72 6.58 99.48 0.66 -11.06 16 23 C 0.16 5.76 4.90 86.16 0.42 6.18 16 24 H 0.04 1.05 7.85 -2.39 -0.02 1.03 16 25 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.12 1.45 7.05 -2.39 -0.02 1.43 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 1.12 7.17 -2.39 -0.02 1.10 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.33 7.70 -2.39 -0.02 1.32 16 34 H 0.10 1.50 7.69 -2.39 -0.02 1.48 16 35 H 0.05 1.86 7.73 -2.39 -0.02 1.84 16 36 H 0.05 2.02 5.60 -2.38 -0.01 2.01 16 37 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.04 1.60 6.21 -2.39 -0.01 1.58 16 41 H 0.04 2.09 4.36 -2.39 -0.01 2.08 16 42 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 43 H 0.26 16.04 8.31 -92.71 -0.77 15.26 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.06 2.09 7.77 -2.39 -0.02 2.07 16 Total: -1.00 -77.79 336.39 3.75 -74.03 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.83 Total: 9.98 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.50 Total: 3.65 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -4.19 Total: -112.54 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.66 Total: 49.35 kcal Total: -77.79 3.75 -74.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040080880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.629 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds