Wall clock time and date at job start Tue Mar 31 2020 02:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46965 * 2 1 4 4 C 1.50701 * 109.47171 * 240.00170 * 2 1 3 5 5 O 1.21277 * 119.99814 * 34.07384 * 4 2 1 6 6 N 1.34776 * 119.99883 * 214.07526 * 4 2 1 7 7 C 1.47080 * 125.62790 * 5.05493 * 6 4 2 8 8 C 1.54457 * 107.29728 * 180.97004 * 7 6 4 9 9 C 1.54394 * 102.86969 * 21.50457 * 8 7 6 10 10 C 1.47575 * 125.62817 * 184.74886 * 6 4 2 11 11 C 1.52108 * 110.50738 * 207.36127 * 9 8 7 12 12 C 1.53342 * 109.44183 * 295.90234 * 11 9 8 13 13 N 1.46932 * 108.69163 * 306.70377 * 12 11 9 14 14 C 1.36936 * 120.55530 * 234.32593 * 13 12 11 15 15 H 1.07999 * 120.00051 * 151.23531 * 14 13 12 16 16 C 1.38813 * 119.99578 * 331.23715 * 14 13 12 17 17 N 1.31617 * 120.00295 * 341.36898 * 16 14 13 18 18 Si 1.86804 * 119.99627 * 161.37368 * 16 14 13 19 19 H 1.48496 * 109.47139 * 94.95176 * 18 16 14 20 20 H 1.48500 * 109.46992 * 214.95536 * 18 16 14 21 21 H 1.48499 * 109.46901 * 334.95131 * 18 16 14 22 22 C 1.46943 * 118.89088 * 54.34792 * 13 12 11 23 23 C 1.52107 * 110.50962 * 83.33184 * 9 8 7 24 24 H 1.08998 * 109.47400 * 54.83053 * 1 2 3 25 25 H 1.09003 * 109.46747 * 174.83204 * 1 2 3 26 26 H 1.09003 * 109.47094 * 294.82346 * 1 2 3 27 27 H 1.09004 * 109.47297 * 119.99960 * 2 1 3 28 28 H 1.09014 * 109.47331 * 60.00074 * 3 2 1 29 29 H 1.08996 * 109.47282 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47705 * 300.00249 * 3 2 1 31 31 H 1.09007 * 109.88054 * 300.39044 * 7 6 4 32 32 H 1.08996 * 109.88143 * 61.54338 * 7 6 4 33 33 H 1.09000 * 110.73413 * 139.84792 * 8 7 6 34 34 H 1.08999 * 110.73293 * 263.15845 * 8 7 6 35 35 H 1.09000 * 110.37460 * 275.52483 * 10 6 4 36 36 H 1.09003 * 110.37165 * 37.87219 * 10 6 4 37 37 H 1.08992 * 109.47743 * 55.89534 * 11 9 8 38 38 H 1.09006 * 109.47142 * 175.91714 * 11 9 8 39 39 H 1.09000 * 109.59805 * 186.94655 * 12 11 9 40 40 H 1.09000 * 109.59930 * 66.46985 * 12 11 9 41 41 H 0.96999 * 119.99505 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.59716 * 185.89098 * 22 13 12 43 43 H 1.09002 * 109.73071 * 65.48660 * 22 13 12 44 44 H 1.08997 * 109.47452 * 184.07892 * 23 9 8 45 45 H 1.08993 * 109.47587 * 304.09663 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.4142 -0.6316 -2.2709 6 7 3.1685 -1.4332 -1.1746 7 6 3.9563 -1.6987 0.0387 8 6 5.1788 -2.5432 -0.3831 9 6 5.2997 -2.2430 -1.8928 10 6 3.8240 -2.0943 -2.3197 11 6 5.9514 -3.4106 -2.6178 12 6 7.3896 -3.5850 -2.1151 13 7 8.0906 -2.2996 -2.2383 14 6 9.2729 -2.2143 -2.9237 15 1 9.5494 -1.2909 -3.4108 16 6 10.1162 -3.3148 -2.9924 17 7 9.9860 -4.2987 -2.1278 18 14 11.4358 -3.3994 -4.3119 19 1 12.7192 -2.8945 -3.7615 20 1 11.6057 -4.8073 -4.7525 21 1 11.0312 -2.5635 -5.4707 22 6 7.5018 -1.1071 -1.6132 23 6 6.0631 -0.9469 -2.1190 24 1 -0.3634 0.5919 -0.8400 25 1 -0.3633 -1.0235 -0.0926 26 1 -0.3633 0.4314 0.9327 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8901 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 4.2892 -0.7582 0.4777 32 1 3.3535 -2.2529 0.7581 33 1 6.0738 -2.2186 0.1477 34 1 4.9921 -3.6037 -0.2143 35 1 3.3778 -3.0724 -2.4995 36 1 3.7482 -1.4719 -3.2114 37 1 5.3853 -4.3213 -2.4225 38 1 5.9626 -3.2122 -3.6896 39 1 7.8984 -4.3381 -2.7168 40 1 7.3766 -3.8958 -1.0704 41 1 10.5756 -5.0675 -2.1757 42 1 8.0848 -0.2268 -1.8841 43 1 7.4977 -1.2238 -0.5294 44 1 6.0760 -0.7138 -3.1836 45 1 5.5748 -0.1380 -1.5756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040613023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:16 Heat of formation + Delta-G solvation = -28.373514 kcal Electronic energy + Delta-G solvation = -23319.647419 eV Core-core repulsion = 20143.894415 eV Total energy + Delta-G solvation = -3175.753004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.47528 -38.69678 -35.86781 -34.52929 -32.99277 -30.95333 -30.01207 -29.41191 -27.44892 -27.13104 -24.46506 -23.37159 -22.24218 -22.23382 -20.71855 -19.02696 -17.97586 -17.30794 -16.36958 -15.97079 -15.42628 -14.87834 -14.58162 -14.34751 -13.88502 -13.63970 -13.49099 -13.19892 -13.08756 -12.83707 -12.76696 -12.46721 -12.34709 -12.03444 -12.00862 -11.51552 -11.34836 -11.32859 -11.21013 -11.07399 -10.77060 -10.67565 -10.47960 -10.25980 -10.13652 -9.84519 -9.72389 -9.56158 -9.37788 -8.54112 -8.46113 -6.66225 -5.81035 -3.22328 2.66150 3.04775 3.36386 3.44274 3.47193 4.37993 4.49240 4.64639 4.74756 4.84743 4.89338 5.08561 5.20488 5.30727 5.38017 5.39222 5.40463 5.51631 5.56941 5.61445 5.66083 5.70656 5.81038 5.94059 5.94530 5.98544 6.00809 6.07533 6.15700 6.17536 6.32461 6.36094 6.51799 6.62332 6.67984 6.72222 6.84096 6.96662 7.33450 7.59968 7.62247 7.79578 8.21355 8.44302 9.20334 9.83998 10.40981 11.27454 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.003854 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.603202 B = 7264.140851 C = 7324.220640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.530 3.470 5 O -0.547 6.547 6 N -0.614 5.614 7 C 0.101 3.899 8 C -0.123 4.123 9 C -0.055 4.055 10 C 0.113 3.887 11 C -0.127 4.127 12 C 0.175 3.825 13 N -0.590 5.590 14 C -0.254 4.254 15 H 0.064 0.936 16 C 0.004 3.996 17 N -0.901 5.901 18 Si 0.899 3.101 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.147 3.853 23 C -0.116 4.116 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.020 0.980 41 H 0.253 0.747 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.059 0.941 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.572 5.941 6.928 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.197 4.197 4 C 0.318 3.682 5 O -0.425 6.425 6 N -0.348 5.348 7 C -0.021 4.021 8 C -0.161 4.161 9 C -0.056 4.056 10 C -0.009 4.009 11 C -0.166 4.166 12 C 0.049 3.951 13 N -0.313 5.313 14 C -0.384 4.384 15 H 0.081 0.919 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.728 3.272 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.204 1.204 22 C 0.021 3.979 23 C -0.155 4.155 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.078 0.922 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.860 5.881 6.383 17.209 hybrid contribution 0.760 -0.217 -0.566 0.972 sum -14.099 5.665 5.817 16.270 Atomic orbital electron populations 1.21655 0.92696 1.02546 1.02279 1.21262 0.97945 0.97604 0.96450 1.21700 1.01476 0.93702 1.02800 1.20355 0.79221 0.78221 0.90362 1.90675 1.56436 1.62847 1.32550 1.48648 1.24322 1.51263 1.10545 1.22139 0.93002 0.99797 0.87211 1.22709 0.96950 0.99730 0.96663 1.21035 0.92261 0.97644 0.94636 1.22421 0.92256 0.96953 0.89309 1.22043 0.99869 0.94896 0.99836 1.20751 0.87071 0.89090 0.98199 1.44030 1.22545 1.03457 1.61274 1.19163 0.95448 0.98952 1.24788 0.91856 1.25021 0.97494 0.98691 0.98251 1.70045 1.40002 1.10071 1.34365 0.86341 0.81738 0.77018 0.82061 1.21494 1.21558 1.20414 1.20938 0.91079 0.91239 0.94679 1.21810 0.97836 0.94659 1.01216 0.91540 0.92530 0.91961 0.89413 0.91444 0.92090 0.91872 0.91518 0.91824 0.89081 0.90715 0.91782 0.90845 0.93024 0.92369 0.89791 0.96171 0.93684 0.92917 0.96357 0.92239 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 8.76 37.16 0.33 -0.94 16 2 C -0.11 -1.14 2.95 -91.77 -0.27 -1.41 16 3 C -0.14 -1.27 9.17 37.16 0.34 -0.93 16 4 C 0.53 7.54 6.85 -10.99 -0.08 7.46 16 5 O -0.55 -9.81 16.66 5.56 0.09 -9.72 16 6 N -0.61 -8.43 3.32 -170.62 -0.57 -9.00 16 7 C 0.10 1.17 5.59 -2.96 -0.02 1.15 16 8 C -0.12 -1.68 4.92 -25.24 -0.12 -1.81 16 9 C -0.05 -0.86 0.55 -153.98 -0.08 -0.95 16 10 C 0.11 1.70 5.81 -2.75 -0.02 1.68 16 11 C -0.13 -2.28 4.84 -27.01 -0.13 -2.41 16 12 C 0.17 3.93 5.06 -3.63 -0.02 3.91 16 13 N -0.59 -14.20 2.97 -172.12 -0.51 -14.71 16 14 C -0.25 -6.83 9.56 -15.06 -0.14 -6.98 16 15 H 0.06 1.69 7.90 -52.49 -0.41 1.28 16 16 C 0.00 0.11 4.86 -17.43 -0.08 0.03 16 17 N -0.90 -25.56 11.34 55.49 0.63 -24.93 16 18 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.15 2.93 6.20 -3.62 -0.02 2.91 16 23 C -0.12 -1.96 4.87 -27.01 -0.13 -2.09 16 24 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.76 7.01 -51.93 -0.36 0.39 16 28 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.62 7.99 -51.93 -0.42 0.21 16 33 H 0.09 1.34 6.18 -51.93 -0.32 1.02 16 34 H 0.07 1.00 7.98 -51.93 -0.41 0.58 16 35 H 0.06 0.95 8.00 -51.93 -0.42 0.53 16 36 H 0.07 1.20 7.99 -51.93 -0.42 0.78 16 37 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 2.16 6.12 -51.93 -0.32 1.84 16 40 H 0.02 0.47 7.62 -51.93 -0.40 0.07 16 41 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 43 H 0.02 0.36 6.56 -51.93 -0.34 0.02 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.75 7.81 -51.93 -0.41 0.35 16 LS Contribution 343.82 15.07 5.18 5.18 Total: -1.00 -30.46 343.82 -8.64 -39.10 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.98 Total: -1.95 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -0.45 Total: -0.36 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: -0.45 Total: -48.64 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.46 -8.64 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040613023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.731 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds