Wall clock time and date at job start Tue Mar 31 2020 02:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46965 * 2 1 4 4 C 1.50701 * 109.47171 * 240.00170 * 2 1 3 5 5 O 1.21277 * 119.99814 * 34.07384 * 4 2 1 6 6 N 1.34776 * 119.99883 * 214.07526 * 4 2 1 7 7 C 1.47080 * 125.62790 * 5.05493 * 6 4 2 8 8 C 1.54457 * 107.29728 * 180.97004 * 7 6 4 9 9 C 1.54394 * 102.86969 * 21.50457 * 8 7 6 10 10 C 1.47575 * 125.62817 * 184.74886 * 6 4 2 11 11 C 1.52108 * 110.50738 * 207.36127 * 9 8 7 12 12 C 1.53342 * 109.44183 * 295.90234 * 11 9 8 13 13 N 1.46932 * 108.69163 * 306.70377 * 12 11 9 14 14 C 1.36936 * 120.55530 * 234.32593 * 13 12 11 15 15 H 1.07999 * 120.00051 * 151.23531 * 14 13 12 16 16 C 1.38813 * 119.99578 * 331.23715 * 14 13 12 17 17 N 1.31617 * 120.00295 * 341.36898 * 16 14 13 18 18 Si 1.86804 * 119.99627 * 161.37368 * 16 14 13 19 19 H 1.48496 * 109.47139 * 94.95176 * 18 16 14 20 20 H 1.48500 * 109.46992 * 214.95536 * 18 16 14 21 21 H 1.48499 * 109.46901 * 334.95131 * 18 16 14 22 22 C 1.46943 * 118.89088 * 54.34792 * 13 12 11 23 23 C 1.52107 * 110.50962 * 83.33184 * 9 8 7 24 24 H 1.08998 * 109.47400 * 54.83053 * 1 2 3 25 25 H 1.09003 * 109.46747 * 174.83204 * 1 2 3 26 26 H 1.09003 * 109.47094 * 294.82346 * 1 2 3 27 27 H 1.09004 * 109.47297 * 119.99960 * 2 1 3 28 28 H 1.09014 * 109.47331 * 60.00074 * 3 2 1 29 29 H 1.08996 * 109.47282 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47705 * 300.00249 * 3 2 1 31 31 H 1.09007 * 109.88054 * 300.39044 * 7 6 4 32 32 H 1.08996 * 109.88143 * 61.54338 * 7 6 4 33 33 H 1.09000 * 110.73413 * 139.84792 * 8 7 6 34 34 H 1.08999 * 110.73293 * 263.15845 * 8 7 6 35 35 H 1.09000 * 110.37460 * 275.52483 * 10 6 4 36 36 H 1.09003 * 110.37165 * 37.87219 * 10 6 4 37 37 H 1.08992 * 109.47743 * 55.89534 * 11 9 8 38 38 H 1.09006 * 109.47142 * 175.91714 * 11 9 8 39 39 H 1.09000 * 109.59805 * 186.94655 * 12 11 9 40 40 H 1.09000 * 109.59930 * 66.46985 * 12 11 9 41 41 H 0.96999 * 119.99505 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.59716 * 185.89098 * 22 13 12 43 43 H 1.09002 * 109.73071 * 65.48660 * 22 13 12 44 44 H 1.08997 * 109.47452 * 184.07892 * 23 9 8 45 45 H 1.08993 * 109.47587 * 304.09663 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.4142 -0.6316 -2.2709 6 7 3.1685 -1.4332 -1.1746 7 6 3.9563 -1.6987 0.0387 8 6 5.1788 -2.5432 -0.3831 9 6 5.2997 -2.2430 -1.8928 10 6 3.8240 -2.0943 -2.3197 11 6 5.9514 -3.4106 -2.6178 12 6 7.3896 -3.5850 -2.1151 13 7 8.0906 -2.2996 -2.2383 14 6 9.2729 -2.2143 -2.9237 15 1 9.5494 -1.2909 -3.4108 16 6 10.1162 -3.3148 -2.9924 17 7 9.9860 -4.2987 -2.1278 18 14 11.4358 -3.3994 -4.3119 19 1 12.7192 -2.8945 -3.7615 20 1 11.6057 -4.8073 -4.7525 21 1 11.0312 -2.5635 -5.4707 22 6 7.5018 -1.1071 -1.6132 23 6 6.0631 -0.9469 -2.1190 24 1 -0.3634 0.5919 -0.8400 25 1 -0.3633 -1.0235 -0.0926 26 1 -0.3633 0.4314 0.9327 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8901 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 4.2892 -0.7582 0.4777 32 1 3.3535 -2.2529 0.7581 33 1 6.0738 -2.2186 0.1477 34 1 4.9921 -3.6037 -0.2143 35 1 3.3778 -3.0724 -2.4995 36 1 3.7482 -1.4719 -3.2114 37 1 5.3853 -4.3213 -2.4225 38 1 5.9626 -3.2122 -3.6896 39 1 7.8984 -4.3381 -2.7168 40 1 7.3766 -3.8958 -1.0704 41 1 10.5756 -5.0675 -2.1757 42 1 8.0848 -0.2268 -1.8841 43 1 7.4977 -1.2238 -0.5294 44 1 6.0760 -0.7138 -3.1836 45 1 5.5748 -0.1380 -1.5756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040613023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:31:16 Heat of formation + Delta-G solvation = -45.807616 kcal Electronic energy + Delta-G solvation = -23320.403419 eV Core-core repulsion = 20143.894415 eV Total energy + Delta-G solvation = -3176.509004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.64660 -39.96573 -37.39464 -35.42965 -34.61819 -32.65358 -31.59266 -30.60235 -28.75722 -28.04729 -26.10504 -24.61042 -23.81328 -23.31656 -22.23453 -20.16672 -19.40349 -18.56092 -17.91373 -17.07729 -16.84793 -16.46741 -15.83774 -15.66152 -15.24875 -15.01958 -14.92330 -14.54308 -14.33632 -14.16666 -13.87330 -13.64334 -13.43751 -13.14919 -13.05152 -12.99191 -12.86347 -12.57404 -12.52584 -12.35281 -12.08807 -12.05092 -11.99375 -11.85158 -11.78481 -11.42253 -11.11168 -11.10447 -10.71585 -10.48905 -9.63998 -8.62398 -7.86830 -5.30164 1.45437 1.48254 1.57495 1.60416 2.00723 2.52042 3.25564 3.39687 3.61743 3.72708 3.75557 3.85441 3.97475 4.11560 4.26681 4.28643 4.39558 4.44667 4.53036 4.60287 4.68075 4.73979 4.76593 4.77882 4.85198 4.89593 4.91214 4.94242 5.01143 5.07664 5.08470 5.18305 5.26175 5.29299 5.30419 5.36388 5.40618 5.43583 5.55354 5.67808 5.80572 6.41490 6.55631 7.14320 7.17882 7.89979 8.40679 9.18954 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.040771 B = 0.003854 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.603202 B = 7264.140851 C = 7324.220640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.523 3.477 5 O -0.593 6.593 6 N -0.615 5.615 7 C 0.105 3.895 8 C -0.119 4.119 9 C -0.052 4.052 10 C 0.119 3.881 11 C -0.115 4.115 12 C 0.184 3.816 13 N -0.609 5.609 14 C -0.265 4.265 15 H 0.060 0.940 16 C -0.045 4.045 17 N -0.929 5.929 18 Si 0.959 3.041 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.274 1.274 22 C 0.146 3.854 23 C -0.102 4.102 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.010 0.990 41 H 0.250 0.750 42 H 0.046 0.954 43 H 0.028 0.972 44 H 0.043 0.957 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 6.833 8.619 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 C -0.195 4.195 4 C 0.313 3.687 5 O -0.474 6.474 6 N -0.347 5.347 7 C -0.017 4.017 8 C -0.157 4.157 9 C -0.053 4.053 10 C -0.004 4.004 11 C -0.154 4.154 12 C 0.058 3.942 13 N -0.333 5.333 14 C -0.395 4.395 15 H 0.077 0.923 16 C -0.241 4.241 17 N -0.574 5.574 18 Si 0.788 3.212 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.199 1.199 22 C 0.020 3.980 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.110 0.890 27 H 0.132 0.868 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.114 6.794 8.097 19.271 hybrid contribution 1.149 -0.473 -1.085 1.650 sum -14.964 6.321 7.012 17.693 Atomic orbital electron populations 1.21668 0.92227 1.02057 1.03090 1.21357 0.98288 0.97918 0.95097 1.21715 1.01432 0.92933 1.03371 1.21187 0.78673 0.77699 0.91112 1.90656 1.57778 1.64367 1.34604 1.48740 1.24374 1.50881 1.10731 1.22264 0.92061 1.00754 0.86591 1.22654 0.97836 1.00682 0.94491 1.20899 0.92309 0.95881 0.96225 1.22188 0.91690 0.97023 0.89485 1.21846 0.97430 0.97089 0.99072 1.20541 0.89008 0.87740 0.96922 1.44280 1.22249 1.04980 1.61749 1.19440 0.96384 0.98869 1.24848 0.92255 1.25688 0.99694 0.98622 1.00056 1.70168 1.40999 1.10476 1.35791 0.85392 0.79383 0.76653 0.79804 1.21229 1.21804 1.19900 1.21058 0.92486 0.89413 0.95006 1.21632 0.96077 0.96095 1.00319 0.93294 0.93254 0.89019 0.86761 0.88704 0.92121 0.93512 0.89543 0.88932 0.89914 0.90149 0.91459 0.92573 0.91003 0.93754 0.93579 0.97150 0.94108 0.93524 0.95375 0.93852 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.76 71.98 0.63 -1.53 16 2 C -0.11 -1.82 2.95 -11.54 -0.03 -1.85 16 3 C -0.14 -2.06 9.17 71.98 0.66 -1.40 16 4 C 0.52 13.83 6.85 87.66 0.60 14.43 16 5 O -0.59 -21.00 16.66 -3.02 -0.05 -21.05 16 6 N -0.61 -15.29 3.32 -812.11 -2.69 -17.98 16 7 C 0.11 2.00 5.59 86.76 0.48 2.48 16 8 C -0.12 -2.95 4.92 31.56 0.16 -2.79 16 9 C -0.05 -1.57 0.55 -51.84 -0.03 -1.60 16 10 C 0.12 3.42 5.81 86.63 0.50 3.92 16 11 C -0.11 -4.11 4.84 30.41 0.15 -3.96 16 12 C 0.18 8.40 5.06 86.41 0.44 8.83 16 13 N -0.61 -29.65 2.97 -698.45 -2.08 -31.73 16 14 C -0.27 -14.50 9.56 84.03 0.80 -13.69 16 15 H 0.06 3.22 7.90 -2.91 -0.02 3.19 16 16 C -0.04 -2.47 4.86 84.86 0.41 -2.06 16 17 N -0.93 -53.86 11.34 21.65 0.25 -53.61 16 18 Si 0.96 44.71 29.59 68.60 2.03 46.74 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 C 0.15 5.73 6.20 86.41 0.54 6.27 16 23 C -0.10 -3.33 4.87 30.41 0.15 -3.18 16 24 H 0.05 0.96 8.02 -2.39 -0.02 0.95 16 25 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.11 1.39 7.01 -2.39 -0.02 1.37 16 28 H 0.09 0.92 8.14 -2.38 -0.02 0.91 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.09 1.32 7.99 -2.39 -0.02 1.30 16 33 H 0.08 2.23 6.18 -2.39 -0.01 2.22 16 34 H 0.08 1.92 7.98 -2.39 -0.02 1.90 16 35 H 0.07 1.90 8.00 -2.39 -0.02 1.88 16 36 H 0.06 1.81 7.99 -2.39 -0.02 1.79 16 37 H 0.07 2.26 8.09 -2.39 -0.02 2.24 16 38 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.05 2.45 6.12 -2.39 -0.01 2.43 16 40 H 0.01 0.49 7.62 -2.39 -0.02 0.47 16 41 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 42 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 43 H 0.03 1.07 6.56 -2.39 -0.02 1.05 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 2.03 7.81 -2.39 -0.02 2.01 16 Total: -1.00 -67.67 343.82 3.85 -63.82 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.94 Total: 9.93 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.46 Total: 3.88 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -4.52 Total: -103.32 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.05 Total: -21.05 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -67.67 3.85 -63.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040613023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.011 kcal (2) G-P(sol) polarization free energy of solvation -67.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds