Wall clock time and date at job start Tue Mar 31 2020 03:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47195 * 2 1 4 4 H 1.09009 * 109.46730 * 54.99604 * 3 2 1 5 5 C 1.52996 * 109.46899 * 295.00005 * 3 2 1 6 6 C 1.50700 * 109.47208 * 174.99698 * 3 2 1 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 3 2 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 3 2 9 9 C 1.47562 * 125.67737 * 359.41452 * 8 6 3 10 10 C 1.55432 * 104.87917 * 156.03340 * 9 8 6 11 11 C 1.53655 * 101.31178 * 35.83211 * 10 9 8 12 12 C 1.53657 * 111.42075 * 204.77397 * 11 10 9 13 13 C 1.55186 * 101.41487 * 272.73068 * 12 11 10 14 14 N 1.47566 * 105.00810 * 324.50573 * 13 12 11 15 15 C 1.36935 * 125.67193 * 203.82540 * 14 13 12 16 16 H 1.07999 * 119.99534 * 180.02562 * 15 14 13 17 17 C 1.38804 * 120.00323 * 0.04597 * 15 14 13 18 18 N 1.31621 * 120.00198 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00158 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46891 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47271 * 119.99853 * 19 17 15 22 22 H 1.48503 * 109.46979 * 239.99898 * 19 17 15 23 23 C 1.47403 * 108.65127 * 23.86093 * 14 13 12 24 24 C 1.47405 * 125.67133 * 179.72919 * 8 6 3 25 25 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47370 * 300.00039 * 1 2 3 27 27 H 1.09000 * 109.46927 * 59.99958 * 1 2 3 28 28 H 1.08992 * 109.47370 * 239.99961 * 2 1 3 29 29 H 1.09000 * 109.46927 * 120.00042 * 2 1 3 30 30 H 1.09004 * 109.46762 * 179.97438 * 5 3 2 31 31 H 1.08995 * 109.47223 * 299.99332 * 5 3 2 32 32 H 1.08996 * 109.47637 * 59.99854 * 5 3 2 33 33 H 1.08999 * 110.33464 * 275.02487 * 9 8 6 34 34 H 1.09000 * 110.33215 * 37.25889 * 9 8 6 35 35 H 1.08991 * 111.25411 * 277.75703 * 10 9 8 36 36 H 1.09004 * 110.94936 * 153.76745 * 10 9 8 37 37 H 1.08997 * 111.03302 * 30.76109 * 12 11 10 38 38 H 1.09001 * 111.03668 * 154.69825 * 12 11 10 39 39 H 1.09001 * 110.33574 * 205.62404 * 13 12 11 40 40 H 1.09003 * 110.42140 * 83.43106 * 13 12 11 41 41 H 0.96995 * 120.00070 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.98613 * 238.54196 * 23 14 13 43 43 H 1.08996 * 109.98457 * 117.23114 * 23 14 13 44 44 H 1.09005 * 109.98277 * 301.45156 * 24 8 6 45 45 H 1.08999 * 109.98969 * 62.71859 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5419 1.4443 0.1239 7 8 4.1449 0.3952 0.2048 8 7 4.2144 2.6120 0.1510 9 6 3.6107 3.9552 0.0563 10 6 4.6382 4.9034 0.7353 11 6 5.9677 4.2591 0.3131 12 6 7.0946 4.5986 1.3010 13 6 7.6142 5.9424 0.7242 14 7 7.4917 5.8027 -0.7397 15 6 8.2169 6.4963 -1.6715 16 1 8.0514 6.3210 -2.7242 17 6 9.1648 7.4243 -1.2630 18 7 9.3664 7.6380 0.0200 19 14 10.1545 8.3700 -2.5341 20 1 9.7413 7.9485 -3.8967 21 1 9.9091 9.8254 -2.3699 22 1 11.6002 8.0874 -2.3461 23 6 6.4584 4.7930 -1.0321 24 6 5.6759 2.7597 0.2737 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.9982 3.1543 -1.3071 31 1 2.0699 1.5876 -2.1491 32 1 0.5489 2.1252 -1.3970 33 1 3.4672 4.2332 -0.9879 34 1 2.6608 3.9821 0.5902 35 1 4.5266 4.8956 1.8195 36 1 4.5523 5.9166 0.3426 37 1 6.7037 4.7310 2.3098 38 1 7.8742 3.8371 1.2819 39 1 8.6562 6.0970 1.0041 40 1 7.0006 6.7708 1.0783 41 1 10.0286 8.2868 0.3055 42 1 6.8863 3.9819 -1.6211 43 1 5.6319 5.2521 -1.5745 44 1 6.0219 2.2885 1.1938 45 1 6.1696 2.3058 -0.5855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041088932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:44 Heat of formation + Delta-G solvation = -18.917268 kcal Electronic energy + Delta-G solvation = -22942.344614 eV Core-core repulsion = 19767.001663 eV Total energy + Delta-G solvation = -3175.342951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.45796 -38.67503 -35.70780 -35.51907 -32.75393 -30.64277 -29.87199 -29.29477 -28.17141 -25.88776 -25.31280 -23.71228 -22.71730 -21.22657 -20.33302 -19.12991 -18.65510 -17.10992 -16.58728 -15.83017 -15.72597 -15.17110 -14.83899 -14.33588 -13.93694 -13.81731 -13.72196 -13.41688 -12.78661 -12.57687 -12.55070 -12.48730 -12.21130 -11.96019 -11.84214 -11.64812 -11.50313 -11.31353 -11.18537 -10.97249 -10.90579 -10.86190 -10.79020 -10.21017 -10.03999 -9.95746 -9.78231 -9.66549 -9.46774 -8.66420 -8.53688 -6.84608 -5.66793 -3.08157 2.69500 3.04416 3.38756 3.44541 3.46861 4.36930 4.47398 4.57163 4.70606 4.74320 4.88141 4.99452 5.11971 5.16683 5.27661 5.30623 5.37640 5.42777 5.46442 5.52785 5.60629 5.69672 5.77840 5.79812 5.82915 5.86932 5.96570 6.05126 6.07835 6.14292 6.17880 6.25809 6.30504 6.35093 6.53726 6.63812 6.73533 6.83193 7.49494 7.61198 7.61708 7.84326 8.22896 8.34354 9.20672 9.81264 10.46380 11.37282 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038587 B = 0.003567 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.463054 B = 7848.455868 C = 8045.940519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.106 4.106 4 H 0.094 0.906 5 C -0.153 4.153 6 C 0.529 3.471 7 O -0.547 6.547 8 N -0.615 5.615 9 C 0.099 3.901 10 C -0.115 4.115 11 C -0.082 4.082 12 C -0.131 4.131 13 C 0.155 3.845 14 N -0.604 5.604 15 C -0.221 4.221 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.152 3.848 24 C 0.124 3.876 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.013 0.987 41 H 0.251 0.749 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.697 -9.274 2.060 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.127 4.127 4 H 0.112 0.888 5 C -0.211 4.211 6 C 0.317 3.683 7 O -0.424 6.424 8 N -0.349 5.349 9 C -0.023 4.023 10 C -0.152 4.152 11 C -0.083 4.083 12 C -0.170 4.170 13 C 0.030 3.970 14 N -0.330 5.330 15 C -0.349 4.349 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.026 3.974 24 C 0.002 3.998 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.086 0.914 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.250 -9.749 2.069 19.062 hybrid contribution 0.494 0.639 -0.643 1.033 sum -15.755 -9.109 1.426 18.255 Atomic orbital electron populations 1.21841 0.95558 1.01782 1.01840 1.21336 0.95208 0.94291 1.03446 1.21294 0.91776 0.99159 1.00515 0.88783 1.21974 1.02083 1.01177 0.95830 1.20364 0.89657 0.82210 0.76045 1.90685 1.70413 1.30807 1.50536 1.48714 1.08262 1.05803 1.72112 1.22604 0.96948 0.81939 1.00857 1.22694 0.93116 0.99015 1.00422 1.21548 0.95726 0.92470 0.98569 1.22872 0.96229 1.01308 0.96576 1.21961 1.02710 0.89744 0.82571 1.44634 1.41434 1.44481 1.02486 1.19119 1.13068 1.14827 0.87932 0.90491 1.24778 0.99821 0.99776 0.96313 1.69810 1.37109 1.37671 1.12503 0.86010 0.79851 0.79497 0.80215 1.20547 1.21778 1.21750 1.21122 0.91711 0.92124 0.92431 1.21890 0.79785 0.96237 1.01900 0.92550 0.92761 0.92425 0.91355 0.91225 0.91359 0.92128 0.91332 0.90917 0.90852 0.90725 0.89236 0.92028 0.91865 0.87736 0.96902 0.93796 0.95725 0.95920 0.91375 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.16 0.36 -0.75 16 2 C -0.10 -1.04 4.75 -26.73 -0.13 -1.16 16 3 C -0.11 -1.08 2.07 -91.77 -0.19 -1.27 16 4 H 0.09 0.82 7.85 -51.92 -0.41 0.41 16 5 C -0.15 -1.33 8.76 37.16 0.33 -1.01 16 6 C 0.53 7.56 7.22 -10.98 -0.08 7.48 16 7 O -0.55 -9.85 16.25 5.55 0.09 -9.76 16 8 N -0.62 -8.59 3.34 -170.69 -0.57 -9.16 16 9 C 0.10 1.15 5.11 -2.17 -0.01 1.14 16 10 C -0.11 -1.57 5.87 -25.10 -0.15 -1.72 16 11 C -0.08 -1.36 0.61 -154.02 -0.09 -1.46 16 12 C -0.13 -2.40 5.93 -25.23 -0.15 -2.55 16 13 C 0.15 3.64 5.83 -2.30 -0.01 3.63 16 14 N -0.60 -15.12 3.41 -170.41 -0.58 -15.70 16 15 C -0.22 -6.09 10.28 -15.06 -0.15 -6.25 16 16 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -26.56 10.10 55.49 0.56 -26.00 16 19 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.15 3.08 6.39 -3.64 -0.02 3.06 16 24 C 0.12 1.96 6.13 -3.64 -0.02 1.94 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.77 7.95 -51.93 -0.41 0.35 16 30 H 0.07 0.58 5.00 -51.93 -0.26 0.32 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 33 H 0.07 0.82 7.08 -51.93 -0.37 0.45 16 34 H 0.07 0.67 7.35 -51.93 -0.38 0.29 16 35 H 0.07 0.95 7.82 -51.93 -0.41 0.55 16 36 H 0.09 1.31 7.94 -51.93 -0.41 0.90 16 37 H 0.06 1.00 7.78 -51.93 -0.40 0.59 16 38 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 39 H 0.10 2.81 5.89 -51.93 -0.31 2.50 16 40 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.02 0.52 7.44 -51.93 -0.39 0.13 16 43 H 0.02 0.45 7.78 -51.93 -0.40 0.05 16 44 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 45 H 0.07 1.17 7.42 -51.93 -0.39 0.78 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -31.27 341.29 -8.51 -39.78 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.70 Total: -1.86 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -0.42 Total: 0.66 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.59 Total: -50.86 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.27 -8.51 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041088932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.859 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds