Wall clock time and date at job start Tue Mar 31 2020 03:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47195 * 2 1 4 4 H 1.09009 * 109.46730 * 54.99604 * 3 2 1 5 5 C 1.52996 * 109.46899 * 295.00005 * 3 2 1 6 6 C 1.50700 * 109.47208 * 174.99698 * 3 2 1 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 3 2 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 3 2 9 9 C 1.47562 * 125.67737 * 359.41452 * 8 6 3 10 10 C 1.55432 * 104.87917 * 156.03340 * 9 8 6 11 11 C 1.53655 * 101.31178 * 35.83211 * 10 9 8 12 12 C 1.53657 * 111.42075 * 204.77397 * 11 10 9 13 13 C 1.55186 * 101.41487 * 272.73068 * 12 11 10 14 14 N 1.47566 * 105.00810 * 324.50573 * 13 12 11 15 15 C 1.36935 * 125.67193 * 203.82540 * 14 13 12 16 16 H 1.07999 * 119.99534 * 180.02562 * 15 14 13 17 17 C 1.38804 * 120.00323 * 0.04597 * 15 14 13 18 18 N 1.31621 * 120.00198 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00158 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46891 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47271 * 119.99853 * 19 17 15 22 22 H 1.48503 * 109.46979 * 239.99898 * 19 17 15 23 23 C 1.47403 * 108.65127 * 23.86093 * 14 13 12 24 24 C 1.47405 * 125.67133 * 179.72919 * 8 6 3 25 25 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47370 * 300.00039 * 1 2 3 27 27 H 1.09000 * 109.46927 * 59.99958 * 1 2 3 28 28 H 1.08992 * 109.47370 * 239.99961 * 2 1 3 29 29 H 1.09000 * 109.46927 * 120.00042 * 2 1 3 30 30 H 1.09004 * 109.46762 * 179.97438 * 5 3 2 31 31 H 1.08995 * 109.47223 * 299.99332 * 5 3 2 32 32 H 1.08996 * 109.47637 * 59.99854 * 5 3 2 33 33 H 1.08999 * 110.33464 * 275.02487 * 9 8 6 34 34 H 1.09000 * 110.33215 * 37.25889 * 9 8 6 35 35 H 1.08991 * 111.25411 * 277.75703 * 10 9 8 36 36 H 1.09004 * 110.94936 * 153.76745 * 10 9 8 37 37 H 1.08997 * 111.03302 * 30.76109 * 12 11 10 38 38 H 1.09001 * 111.03668 * 154.69825 * 12 11 10 39 39 H 1.09001 * 110.33574 * 205.62404 * 13 12 11 40 40 H 1.09003 * 110.42140 * 83.43106 * 13 12 11 41 41 H 0.96995 * 120.00070 * 180.02562 * 18 17 15 42 42 H 1.08991 * 109.98613 * 238.54196 * 23 14 13 43 43 H 1.08996 * 109.98457 * 117.23114 * 23 14 13 44 44 H 1.09005 * 109.98277 * 301.45156 * 24 8 6 45 45 H 1.08999 * 109.98969 * 62.71859 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8419 5 6 1.6352 2.1265 -1.3073 6 6 3.5419 1.4443 0.1239 7 8 4.1449 0.3952 0.2048 8 7 4.2144 2.6120 0.1510 9 6 3.6107 3.9552 0.0563 10 6 4.6382 4.9034 0.7353 11 6 5.9677 4.2591 0.3131 12 6 7.0946 4.5986 1.3010 13 6 7.6142 5.9424 0.7242 14 7 7.4917 5.8027 -0.7397 15 6 8.2169 6.4963 -1.6715 16 1 8.0514 6.3210 -2.7242 17 6 9.1648 7.4243 -1.2630 18 7 9.3664 7.6380 0.0200 19 14 10.1545 8.3700 -2.5341 20 1 9.7413 7.9485 -3.8967 21 1 9.9091 9.8254 -2.3699 22 1 11.6002 8.0874 -2.3461 23 6 6.4584 4.7930 -1.0321 24 6 5.6759 2.7597 0.2737 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.9982 3.1543 -1.3071 31 1 2.0699 1.5876 -2.1491 32 1 0.5489 2.1252 -1.3970 33 1 3.4672 4.2332 -0.9879 34 1 2.6608 3.9821 0.5902 35 1 4.5266 4.8956 1.8195 36 1 4.5523 5.9166 0.3426 37 1 6.7037 4.7310 2.3098 38 1 7.8742 3.8371 1.2819 39 1 8.6562 6.0970 1.0041 40 1 7.0006 6.7708 1.0783 41 1 10.0286 8.2868 0.3055 42 1 6.8863 3.9819 -1.6211 43 1 5.6319 5.2521 -1.5745 44 1 6.0219 2.2885 1.1938 45 1 6.1696 2.3058 -0.5855 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041088932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:43 Heat of formation + Delta-G solvation = -37.466873 kcal Electronic energy + Delta-G solvation = -22943.148985 eV Core-core repulsion = 19767.001663 eV Total energy + Delta-G solvation = -3176.147322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64684 -39.99475 -37.21806 -36.39233 -34.51490 -32.16912 -30.78654 -30.76207 -29.55453 -27.44269 -26.41467 -25.08734 -23.92643 -22.26537 -22.02589 -20.31161 -19.88284 -18.86026 -17.88723 -16.92067 -16.85504 -16.75573 -16.11628 -15.80378 -15.63466 -15.06468 -14.57618 -14.35769 -14.10259 -14.04168 -13.82290 -13.59993 -13.41149 -13.12588 -13.01411 -12.96964 -12.74453 -12.72068 -12.54716 -12.37892 -12.32276 -11.98810 -11.77567 -11.70095 -11.57389 -11.51952 -11.44751 -11.18841 -10.75834 -10.71297 -9.68932 -8.87536 -7.77173 -5.20858 1.46810 1.47615 1.57763 1.61170 1.96815 2.49409 3.28595 3.38864 3.54822 3.62915 3.68633 3.82587 3.92038 4.00604 4.22341 4.25505 4.34990 4.40162 4.52849 4.60877 4.63503 4.64349 4.70306 4.75842 4.77836 4.84404 4.94276 4.98779 5.03816 5.05489 5.07482 5.15037 5.22235 5.23468 5.31361 5.34323 5.39641 5.47319 5.53126 5.65996 5.83485 6.31749 6.53820 7.11768 7.12838 7.78454 8.42589 9.24810 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038587 B = 0.003567 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.463054 B = 7848.455868 C = 8045.940519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.098 4.098 4 H 0.120 0.880 5 C -0.150 4.150 6 C 0.522 3.478 7 O -0.593 6.593 8 N -0.615 5.615 9 C 0.103 3.897 10 C -0.110 4.110 11 C -0.072 4.072 12 C -0.117 4.117 13 C 0.159 3.841 14 N -0.626 5.626 15 C -0.237 4.237 16 H 0.078 0.922 17 C -0.066 4.066 18 N -0.948 5.948 19 Si 0.978 3.022 20 H -0.268 1.268 21 H -0.290 1.290 22 H -0.293 1.293 23 C 0.151 3.849 24 C 0.130 3.870 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.067 0.933 40 H -0.004 1.004 41 H 0.247 0.753 42 H 0.014 0.986 43 H 0.032 0.968 44 H 0.067 0.933 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.399 -9.194 2.012 21.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.119 4.119 4 H 0.138 0.862 5 C -0.207 4.207 6 C 0.313 3.687 7 O -0.473 6.473 8 N -0.347 5.347 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.073 4.073 12 C -0.156 4.156 13 C 0.034 3.966 14 N -0.352 5.352 15 C -0.366 4.366 16 H 0.096 0.904 17 C -0.258 4.258 18 N -0.597 5.597 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.217 1.217 22 H -0.220 1.220 23 C 0.026 3.974 24 C 0.007 3.993 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.014 0.986 41 H 0.057 0.943 42 H 0.032 0.968 43 H 0.050 0.950 44 H 0.085 0.915 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.990 -9.669 2.009 21.404 hybrid contribution 1.362 0.582 -0.644 1.615 sum -17.627 -9.087 1.365 19.879 Atomic orbital electron populations 1.21803 0.93132 1.02474 1.02967 1.21322 0.97199 0.93919 1.01827 1.21364 0.88351 0.99813 1.02395 0.86177 1.21986 1.03672 1.00885 0.94187 1.21226 0.91363 0.81381 0.74768 1.90665 1.71674 1.32446 1.52561 1.48788 1.07335 1.06902 1.71725 1.22759 0.97616 0.79739 1.01719 1.22687 0.91558 0.98823 1.01721 1.21380 0.96715 0.93367 0.95825 1.22722 0.96706 0.97996 0.98184 1.21720 1.00404 0.92041 0.82389 1.44923 1.42382 1.45054 1.02844 1.19456 1.13444 1.15070 0.88641 0.90426 1.25588 1.01056 1.01011 0.98175 1.70058 1.37544 1.38077 1.14065 0.85013 0.77934 0.77875 0.78526 1.19280 1.21743 1.22010 1.21248 0.90765 0.90778 0.94596 1.21634 0.81459 0.95118 1.01103 0.92231 0.91560 0.91247 0.93069 0.92946 0.90790 0.93558 0.88770 0.90184 0.87007 0.88963 0.89971 0.89202 0.92436 0.91479 0.98555 0.94347 0.96779 0.95049 0.91463 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 71.98 0.70 -0.99 16 2 C -0.10 -1.89 4.75 30.59 0.15 -1.74 16 3 C -0.10 -1.72 2.07 -11.54 -0.02 -1.74 16 4 H 0.12 1.53 7.85 -2.38 -0.02 1.51 16 5 C -0.15 -2.09 8.76 71.98 0.63 -1.46 16 6 C 0.52 14.11 7.22 87.66 0.63 14.74 16 7 O -0.59 -21.36 16.25 -3.04 -0.05 -21.41 16 8 N -0.61 -15.86 3.34 -812.34 -2.71 -18.57 16 9 C 0.10 2.02 5.11 87.01 0.45 2.46 16 10 C -0.11 -2.72 5.87 31.65 0.19 -2.53 16 11 C -0.07 -2.31 0.61 -51.86 -0.03 -2.34 16 12 C -0.12 -4.24 5.93 31.57 0.19 -4.05 16 13 C 0.16 7.66 5.83 86.93 0.51 8.16 16 14 N -0.63 -31.87 3.41 -693.05 -2.36 -34.23 16 15 C -0.24 -13.28 10.28 84.03 0.86 -12.41 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 17 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 18 N -0.95 -56.08 10.10 21.65 0.22 -55.86 16 19 Si 0.98 45.62 29.55 68.60 2.03 47.64 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 22 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 23 C 0.15 6.11 6.39 86.15 0.55 6.66 16 24 C 0.13 3.99 6.13 86.14 0.53 4.52 16 25 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.65 6.56 -2.39 -0.02 0.63 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.12 7.95 -2.39 -0.02 1.10 16 30 H 0.07 0.95 5.00 -2.38 -0.01 0.94 16 31 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.86 6.56 -2.39 -0.02 0.84 16 33 H 0.08 1.51 7.08 -2.39 -0.02 1.49 16 34 H 0.11 1.42 7.35 -2.39 -0.02 1.40 16 35 H 0.09 2.00 7.82 -2.39 -0.02 1.98 16 36 H 0.08 2.21 7.94 -2.39 -0.02 2.19 16 37 H 0.09 2.74 7.78 -2.39 -0.02 2.72 16 38 H 0.06 2.13 8.09 -2.39 -0.02 2.11 16 39 H 0.07 3.75 5.89 -2.39 -0.01 3.74 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.01 0.60 7.44 -2.39 -0.02 0.58 16 43 H 0.03 1.22 7.78 -2.39 -0.02 1.20 16 44 H 0.07 2.09 7.86 -2.38 -0.02 2.07 16 45 H 0.05 1.74 7.42 -2.39 -0.02 1.72 16 Total: -1.00 -70.44 341.29 3.86 -66.59 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 0.95 Total: 9.80 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.78 Total: 6.04 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -4.86 Total: -108.66 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -70.44 3.86 -66.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041088932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.121 kcal (2) G-P(sol) polarization free energy of solvation -70.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds