Wall clock time and date at job start Tue Mar 31 2020 03:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46874 * 2 1 4 4 H 1.08996 * 109.47310 * 55.00521 * 3 2 1 5 5 C 1.53001 * 109.47119 * 294.99972 * 3 2 1 6 6 C 1.50703 * 109.47046 * 175.00298 * 3 2 1 7 7 O 1.21286 * 119.99699 * 34.44743 * 6 3 2 8 8 N 1.34767 * 120.00027 * 214.44712 * 6 3 2 9 9 C 1.47167 * 125.59541 * 5.30894 * 8 6 3 10 10 C 1.54661 * 107.35252 * 180.88097 * 9 8 6 11 11 C 1.53307 * 102.71676 * 20.50777 * 10 9 8 12 12 C 1.53312 * 112.22297 * 88.17459 * 11 10 9 13 13 C 1.54661 * 102.71524 * 155.00388 * 12 11 10 14 14 N 1.47160 * 107.35243 * 339.49014 * 13 12 11 15 15 C 1.36944 * 125.59380 * 179.12391 * 14 13 12 16 16 H 1.07999 * 119.99778 * 179.97438 * 15 14 13 17 17 C 1.38814 * 119.99759 * 359.97157 * 15 14 13 18 18 N 1.31619 * 119.99777 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99750 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.46824 * 60.00419 * 19 17 15 21 21 H 1.48502 * 109.46963 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47052 * 300.00499 * 19 17 15 23 23 C 1.47791 * 108.81612 * 359.10059 * 14 13 12 24 24 C 1.47789 * 125.59502 * 184.99441 * 8 6 3 25 25 H 1.09008 * 109.47429 * 60.00013 * 1 2 3 26 26 H 1.08998 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47338 * 300.00036 * 1 2 3 28 28 H 1.09006 * 109.46566 * 240.00271 * 2 1 3 29 29 H 1.08994 * 109.47051 * 120.00403 * 2 1 3 30 30 H 1.09009 * 109.47187 * 176.04971 * 5 3 2 31 31 H 1.09000 * 109.47534 * 56.05601 * 5 3 2 32 32 H 1.08997 * 109.47274 * 296.04500 * 5 3 2 33 33 H 1.08996 * 109.87047 * 300.32155 * 9 8 6 34 34 H 1.08995 * 109.86880 * 61.30042 * 9 8 6 35 35 H 1.09003 * 110.76343 * 138.81026 * 10 9 8 36 36 H 1.08997 * 110.76683 * 262.01361 * 10 9 8 37 37 H 1.09000 * 110.76007 * 273.30935 * 12 11 10 38 38 H 1.08997 * 110.75972 * 36.50728 * 12 11 10 39 39 H 1.08999 * 109.86656 * 98.93846 * 13 12 11 40 40 H 1.09003 * 109.86187 * 219.91203 * 13 12 11 41 41 H 0.97002 * 119.99719 * 179.97438 * 18 17 15 42 42 H 1.08996 * 110.40113 * 263.37447 * 23 14 13 43 43 H 1.09004 * 110.40122 * 140.95849 * 23 14 13 44 44 H 1.08994 * 110.40653 * 276.64772 * 24 8 6 45 45 H 1.09004 * 110.39997 * 39.05854 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1940 0.5620 -0.3932 8 7 4.1603 2.4264 0.8088 9 6 3.4904 3.4902 1.5737 10 6 4.5941 4.3958 2.1685 11 6 5.8009 4.0885 1.2744 12 6 5.8479 4.9886 0.0342 13 6 7.3514 4.9906 -0.3282 14 7 8.0942 4.5929 0.8783 15 6 9.4539 4.4568 0.9685 16 1 9.9060 4.1592 1.9031 17 6 10.2510 4.7012 -0.1414 18 7 9.7000 5.0642 -1.2802 19 14 12.1056 4.5147 -0.0186 20 1 12.4386 3.1185 0.3617 21 1 12.7229 4.8312 -1.3317 22 1 12.6296 5.4468 1.0118 23 6 7.1323 4.3651 1.9769 24 6 5.6228 2.6079 0.9206 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.9369 3.1736 -1.2782 31 1 0.5540 2.0634 -1.4309 32 1 2.1262 1.6302 -2.1443 33 1 2.8487 4.0735 0.9133 34 1 2.8959 3.0520 2.3754 35 1 4.3145 5.4466 2.0924 36 1 4.7986 4.1260 3.2046 37 1 5.2558 4.5619 -0.7754 38 1 5.5038 5.9947 0.2738 39 1 7.5398 4.2780 -1.1311 40 1 7.6557 5.9896 -0.6407 41 1 10.2570 5.2354 -2.0557 42 1 7.0539 5.2535 2.6036 43 1 7.4335 3.5038 2.5732 44 1 6.0250 1.9746 1.7113 45 1 6.1072 2.3841 -0.0299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041088933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:48 Heat of formation + Delta-G solvation = -22.387421 kcal Electronic energy + Delta-G solvation = -23081.437009 eV Core-core repulsion = 19905.943581 eV Total energy + Delta-G solvation = -3175.493428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.36487 -38.62173 -35.70472 -35.39216 -32.64329 -30.69125 -29.84928 -29.08066 -28.33092 -26.11330 -24.99535 -23.95094 -22.45961 -21.28039 -20.22712 -18.96855 -18.61125 -17.13363 -16.68313 -15.77599 -15.51143 -15.02751 -14.74681 -14.40308 -13.99856 -13.85843 -13.58283 -13.20617 -13.00425 -12.80696 -12.36278 -12.31306 -11.98236 -11.95288 -11.88906 -11.70321 -11.59162 -11.38006 -11.14432 -10.94821 -10.87588 -10.81865 -10.72343 -10.23321 -10.05960 -9.92227 -9.74931 -9.60894 -9.49166 -8.56585 -8.44892 -6.80538 -5.67772 -3.01418 2.76946 3.11748 3.43347 3.47495 3.48776 4.42219 4.52906 4.60424 4.68760 4.79219 4.92898 4.97995 5.16617 5.19674 5.29992 5.30626 5.40242 5.42975 5.51904 5.55177 5.62876 5.72670 5.82783 5.84441 5.86302 5.91106 5.95188 6.04844 6.10786 6.13599 6.18587 6.22128 6.34517 6.41292 6.52947 6.62367 6.74234 6.81157 7.58346 7.64772 7.70098 7.85648 8.28418 8.32629 9.24867 9.85060 10.50857 11.43767 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029666 B = 0.003969 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.619052 B = 7053.010216 C = 7355.400179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.141 4.141 6 C 0.529 3.471 7 O -0.541 6.541 8 N -0.618 5.618 9 C 0.104 3.896 10 C -0.117 4.117 11 C -0.083 4.083 12 C -0.128 4.128 13 C 0.179 3.821 14 N -0.605 5.605 15 C -0.229 4.229 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.152 3.848 24 C 0.130 3.870 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.252 0.748 42 H 0.024 0.976 43 H 0.040 0.960 44 H 0.065 0.935 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.549 -3.276 5.001 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.127 4.127 4 H 0.104 0.896 5 C -0.199 4.199 6 C 0.317 3.683 7 O -0.418 6.418 8 N -0.352 5.352 9 C -0.020 4.020 10 C -0.155 4.155 11 C -0.085 4.085 12 C -0.167 4.167 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.025 3.975 24 C 0.009 3.991 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.039 -3.788 4.518 19.931 hybrid contribution 1.020 0.047 0.080 1.024 sum -18.019 -3.741 4.599 18.969 Atomic orbital electron populations 1.21833 0.95421 1.01793 1.01871 1.21385 0.95518 0.94411 1.03326 1.21303 0.91885 0.98942 1.00566 0.89555 1.21751 1.01851 1.00451 0.95818 1.20328 0.89921 0.80435 0.77598 1.90706 1.67447 1.36020 1.47652 1.48764 1.08198 1.27907 1.50289 1.22091 0.95894 0.89088 0.94876 1.22415 0.94139 0.99599 0.99389 1.21632 0.95646 0.94258 0.96940 1.22646 1.00616 0.97627 0.95767 1.21213 0.84271 0.99778 0.89306 1.44577 1.01815 1.80563 1.06231 1.19002 0.80346 1.39874 0.96513 0.90510 1.24796 0.98094 1.01724 0.95779 1.69956 1.33505 1.52582 1.00874 0.86202 0.85090 0.77864 0.76621 1.21162 1.21633 1.21225 1.21215 0.87132 0.97678 0.91473 1.21981 0.79249 0.95233 1.02664 0.92311 0.92528 0.92787 0.90740 0.91843 0.92186 0.91257 0.91791 0.91601 0.91811 0.89903 0.90544 0.92328 0.92174 0.93685 0.93949 0.93740 0.95804 0.94183 0.91649 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.11 -1.11 4.97 -26.73 -0.13 -1.25 16 3 C -0.11 -1.15 2.43 -91.77 -0.22 -1.37 16 4 H 0.09 0.77 6.99 -51.93 -0.36 0.41 16 5 C -0.14 -1.38 9.02 37.16 0.34 -1.05 16 6 C 0.53 8.16 6.85 -10.99 -0.08 8.08 16 7 O -0.54 -10.67 16.68 5.55 0.09 -10.58 16 8 N -0.62 -9.14 3.34 -170.92 -0.57 -9.71 16 9 C 0.10 1.15 5.95 -2.80 -0.02 1.13 16 10 C -0.12 -1.42 5.97 -25.70 -0.15 -1.57 16 11 C -0.08 -1.38 0.62 -154.02 -0.10 -1.48 16 12 C -0.13 -2.35 5.92 -25.70 -0.15 -2.50 16 13 C 0.18 4.36 5.38 -2.81 -0.02 4.34 16 14 N -0.61 -15.37 3.41 -170.60 -0.58 -15.95 16 15 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -27.43 10.30 55.49 0.57 -26.86 16 19 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.15 3.03 6.28 -3.31 -0.02 3.01 16 24 C 0.13 2.29 5.85 -3.20 -0.02 2.28 16 25 H 0.06 0.40 6.48 -51.92 -0.34 0.07 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.87 8.02 -51.93 -0.42 0.45 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.07 0.52 6.39 -51.93 -0.33 0.19 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.58 7.99 -51.93 -0.42 0.16 16 35 H 0.08 0.90 7.78 -51.93 -0.40 0.50 16 36 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.06 1.04 8.01 -51.93 -0.42 0.63 16 38 H 0.06 1.00 7.82 -51.93 -0.41 0.60 16 39 H 0.04 1.24 7.39 -51.93 -0.38 0.86 16 40 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 41 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.02 0.47 8.07 -51.93 -0.42 0.05 16 43 H 0.04 0.79 7.80 -51.93 -0.41 0.38 16 44 H 0.07 1.16 7.85 -51.93 -0.41 0.75 16 45 H 0.08 1.75 8.00 -51.93 -0.42 1.34 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -32.55 348.44 -8.73 -41.28 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -8.01 Total: -2.77 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.46 Total: 1.95 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.58 Total: -52.52 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.55 -8.73 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041088933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.890 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds