Wall clock time and date at job start Tue Mar 31 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46874 * 2 1 4 4 H 1.08996 * 109.47310 * 55.00521 * 3 2 1 5 5 C 1.53001 * 109.47119 * 294.99972 * 3 2 1 6 6 C 1.50703 * 109.47046 * 175.00298 * 3 2 1 7 7 O 1.21286 * 119.99699 * 34.44743 * 6 3 2 8 8 N 1.34767 * 120.00027 * 214.44712 * 6 3 2 9 9 C 1.47167 * 125.59541 * 5.30894 * 8 6 3 10 10 C 1.54661 * 107.35252 * 180.88097 * 9 8 6 11 11 C 1.53307 * 102.71676 * 20.50777 * 10 9 8 12 12 C 1.53312 * 112.22297 * 88.17459 * 11 10 9 13 13 C 1.54661 * 102.71524 * 155.00388 * 12 11 10 14 14 N 1.47160 * 107.35243 * 339.49014 * 13 12 11 15 15 C 1.36944 * 125.59380 * 179.12391 * 14 13 12 16 16 H 1.07999 * 119.99778 * 179.97438 * 15 14 13 17 17 C 1.38814 * 119.99759 * 359.97157 * 15 14 13 18 18 N 1.31619 * 119.99777 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99750 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.46824 * 60.00419 * 19 17 15 21 21 H 1.48502 * 109.46963 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47052 * 300.00499 * 19 17 15 23 23 C 1.47791 * 108.81612 * 359.10059 * 14 13 12 24 24 C 1.47789 * 125.59502 * 184.99441 * 8 6 3 25 25 H 1.09008 * 109.47429 * 60.00013 * 1 2 3 26 26 H 1.08998 * 109.47286 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47338 * 300.00036 * 1 2 3 28 28 H 1.09006 * 109.46566 * 240.00271 * 2 1 3 29 29 H 1.08994 * 109.47051 * 120.00403 * 2 1 3 30 30 H 1.09009 * 109.47187 * 176.04971 * 5 3 2 31 31 H 1.09000 * 109.47534 * 56.05601 * 5 3 2 32 32 H 1.08997 * 109.47274 * 296.04500 * 5 3 2 33 33 H 1.08996 * 109.87047 * 300.32155 * 9 8 6 34 34 H 1.08995 * 109.86880 * 61.30042 * 9 8 6 35 35 H 1.09003 * 110.76343 * 138.81026 * 10 9 8 36 36 H 1.08997 * 110.76683 * 262.01361 * 10 9 8 37 37 H 1.09000 * 110.76007 * 273.30935 * 12 11 10 38 38 H 1.08997 * 110.75972 * 36.50728 * 12 11 10 39 39 H 1.08999 * 109.86656 * 98.93846 * 13 12 11 40 40 H 1.09003 * 109.86187 * 219.91203 * 13 12 11 41 41 H 0.97002 * 119.99719 * 179.97438 * 18 17 15 42 42 H 1.08996 * 110.40113 * 263.37447 * 23 14 13 43 43 H 1.09004 * 110.40122 * 140.95849 * 23 14 13 44 44 H 1.08994 * 110.40653 * 276.64772 * 24 8 6 45 45 H 1.09004 * 110.39997 * 39.05854 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1940 0.5620 -0.3932 8 7 4.1603 2.4264 0.8088 9 6 3.4904 3.4902 1.5737 10 6 4.5941 4.3958 2.1685 11 6 5.8009 4.0885 1.2744 12 6 5.8479 4.9886 0.0342 13 6 7.3514 4.9906 -0.3282 14 7 8.0942 4.5929 0.8783 15 6 9.4539 4.4568 0.9685 16 1 9.9060 4.1592 1.9031 17 6 10.2510 4.7012 -0.1414 18 7 9.7000 5.0642 -1.2802 19 14 12.1056 4.5147 -0.0186 20 1 12.4386 3.1185 0.3617 21 1 12.7229 4.8312 -1.3317 22 1 12.6296 5.4468 1.0118 23 6 7.1323 4.3651 1.9769 24 6 5.6228 2.6079 0.9206 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.9369 3.1736 -1.2782 31 1 0.5540 2.0634 -1.4309 32 1 2.1262 1.6302 -2.1443 33 1 2.8487 4.0735 0.9133 34 1 2.8959 3.0520 2.3754 35 1 4.3145 5.4466 2.0924 36 1 4.7986 4.1260 3.2046 37 1 5.2558 4.5619 -0.7754 38 1 5.5038 5.9947 0.2738 39 1 7.5398 4.2780 -1.1311 40 1 7.6557 5.9896 -0.6407 41 1 10.2570 5.2354 -2.0557 42 1 7.0539 5.2535 2.6036 43 1 7.4335 3.5038 2.5732 44 1 6.0250 1.9746 1.7113 45 1 6.1072 2.3841 -0.0299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041088933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:47 Heat of formation + Delta-G solvation = -42.951417 kcal Electronic energy + Delta-G solvation = -23082.328731 eV Core-core repulsion = 19905.943581 eV Total energy + Delta-G solvation = -3176.385150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61013 -39.97956 -37.23436 -36.36083 -34.46781 -32.22417 -30.73971 -30.65738 -29.73130 -27.57980 -26.31658 -25.36818 -23.65431 -22.23315 -22.09184 -20.31025 -19.76148 -18.82604 -18.10780 -16.94488 -16.76786 -16.64305 -16.03464 -15.86141 -15.60783 -15.03340 -14.58744 -14.46867 -14.31848 -14.05956 -13.83862 -13.51820 -13.30213 -13.09830 -12.98261 -12.92144 -12.78934 -12.66831 -12.58721 -12.53855 -12.37328 -12.09019 -11.88180 -11.72942 -11.60268 -11.51244 -11.40989 -11.23118 -10.72770 -10.69892 -9.65145 -8.89639 -7.85445 -5.20676 1.43164 1.47120 1.53047 1.59504 1.98145 2.48671 3.30161 3.40692 3.51686 3.70929 3.72272 3.81052 3.87328 4.00990 4.24932 4.30878 4.39359 4.41549 4.51041 4.57956 4.61010 4.65473 4.72107 4.75614 4.79482 4.88514 4.93292 4.98583 5.01318 5.03610 5.07099 5.12704 5.19095 5.26931 5.33208 5.36626 5.38667 5.44563 5.50679 5.65476 5.75950 6.18676 6.56832 7.09302 7.14703 7.77495 8.41650 9.24725 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029666 B = 0.003969 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.619052 B = 7053.010216 C = 7355.400179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.095 4.095 4 H 0.121 0.879 5 C -0.139 4.139 6 C 0.518 3.482 7 O -0.599 6.599 8 N -0.617 5.617 9 C 0.099 3.901 10 C -0.106 4.106 11 C -0.073 4.073 12 C -0.109 4.109 13 C 0.187 3.813 14 N -0.628 5.628 15 C -0.241 4.241 16 H 0.084 0.916 17 C -0.070 4.070 18 N -0.953 5.953 19 Si 0.978 3.022 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.273 1.273 23 C 0.147 3.853 24 C 0.133 3.867 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.061 0.939 38 H 0.089 0.911 39 H -0.005 1.005 40 H 0.007 0.993 41 H 0.245 0.755 42 H 0.044 0.956 43 H 0.040 0.960 44 H 0.059 0.941 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.651 -2.268 7.438 23.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.116 4.116 4 H 0.139 0.861 5 C -0.197 4.197 6 C 0.309 3.691 7 O -0.480 6.480 8 N -0.349 5.349 9 C -0.022 4.022 10 C -0.143 4.143 11 C -0.074 4.074 12 C -0.148 4.148 13 C 0.062 3.938 14 N -0.355 5.355 15 C -0.370 4.370 16 H 0.102 0.898 17 C -0.263 4.263 18 N -0.602 5.602 19 Si 0.806 3.194 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.198 1.198 23 C 0.022 3.978 24 C 0.010 3.990 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.014 0.986 40 H 0.025 0.975 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -22.187 -2.757 7.016 23.432 hybrid contribution 2.017 -0.310 -0.657 2.144 sum -20.170 -3.067 6.359 21.370 Atomic orbital electron populations 1.21794 0.92659 1.02593 1.03150 1.21385 0.97767 0.93827 1.01723 1.21376 0.87962 0.99828 1.02418 0.86105 1.21778 1.03531 1.00154 0.94195 1.21351 0.91882 0.79487 0.76415 1.90677 1.69046 1.38381 1.49941 1.48880 1.06912 1.28736 1.50419 1.22439 0.95748 0.88121 0.95926 1.22455 0.91299 1.01495 0.99090 1.21482 0.96321 0.92930 0.96680 1.22460 0.95762 0.99766 0.96765 1.20924 0.88473 0.96152 0.88245 1.44898 1.02015 1.80484 1.08081 1.19452 0.82122 1.38771 0.96703 0.89820 1.25676 1.02651 1.02301 0.95628 1.70206 1.34616 1.54066 1.01351 0.85155 0.79756 0.78051 0.76416 1.20592 1.22222 1.19838 1.21460 0.87567 0.98291 0.90514 1.21698 0.81438 0.96133 0.99726 0.91356 0.92131 0.91042 0.93252 0.92800 0.91671 0.88196 0.94284 0.89048 0.88332 0.87320 0.88713 0.92017 0.89270 0.98632 0.97462 0.94609 0.93835 0.94147 0.92313 0.94970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.67 71.98 0.70 -1.01 16 2 C -0.11 -2.09 4.97 30.59 0.15 -1.93 16 3 C -0.09 -1.83 2.43 -11.54 -0.03 -1.85 16 4 H 0.12 1.52 6.99 -2.39 -0.02 1.50 16 5 C -0.14 -2.38 9.02 71.98 0.65 -1.73 16 6 C 0.52 15.74 6.85 87.66 0.60 16.34 16 7 O -0.60 -24.86 16.68 -3.05 -0.05 -24.92 16 8 N -0.62 -17.26 3.34 -813.05 -2.72 -19.98 16 9 C 0.10 1.69 5.95 86.82 0.52 2.21 16 10 C -0.11 -2.03 5.97 31.26 0.19 -1.84 16 11 C -0.07 -2.30 0.62 -51.87 -0.03 -2.33 16 12 C -0.11 -3.93 5.92 31.26 0.19 -3.75 16 13 C 0.19 9.56 5.38 86.82 0.47 10.03 16 14 N -0.63 -32.78 3.41 -693.65 -2.37 -35.15 16 15 C -0.24 -13.88 10.28 84.03 0.86 -13.02 16 16 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 17 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 18 N -0.95 -59.74 10.30 21.65 0.22 -59.52 16 19 Si 0.98 47.36 29.55 68.60 2.03 49.38 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 C 0.15 5.72 6.28 86.15 0.54 6.27 16 24 C 0.13 4.75 5.85 86.22 0.50 5.26 16 25 H 0.07 0.68 6.48 -2.38 -0.02 0.67 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 1.18 8.02 -2.38 -0.02 1.16 16 29 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 31 H 0.10 1.11 6.39 -2.39 -0.02 1.10 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.13 7.99 -2.39 -0.02 1.11 16 35 H 0.11 1.65 7.78 -2.39 -0.02 1.63 16 36 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 37 H 0.06 2.18 8.01 -2.39 -0.02 2.16 16 38 H 0.09 2.72 7.82 -2.39 -0.02 2.70 16 39 H 0.00 -0.28 7.39 -2.39 -0.02 -0.29 16 40 H 0.01 0.41 7.49 -2.39 -0.02 0.39 16 41 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.04 1.57 8.07 -2.39 -0.02 1.55 16 43 H 0.04 1.57 7.80 -2.38 -0.02 1.55 16 44 H 0.06 2.14 7.85 -2.39 -0.02 2.12 16 45 H 0.03 1.46 8.00 -2.38 -0.02 1.44 16 Total: -1.00 -78.56 348.44 3.82 -74.73 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.94 Total: 6.47 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.77 Total: 8.98 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -4.86 Total: -114.65 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.38 kcal Total: -78.56 3.82 -74.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041088933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.781 kcal (2) G-P(sol) polarization free energy of solvation -78.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds