Wall clock time and date at job start Tue Mar 31 2020 03:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47179 * 2 1 4 4 H 1.09005 * 109.46941 * 305.00232 * 3 2 1 5 5 C 1.52995 * 109.47008 * 64.99942 * 3 2 1 6 6 C 1.50691 * 109.47314 * 185.00277 * 3 2 1 7 7 O 1.21282 * 120.00121 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00531 * 179.97438 * 6 3 2 9 9 C 1.48485 * 127.63984 * 359.91341 * 8 6 3 10 10 C 1.54753 * 104.57804 * 218.64418 * 9 8 6 11 11 C 1.52878 * 104.51292 * 336.50924 * 10 9 8 12 12 C 1.53712 * 111.74329 * 122.51011 * 11 10 9 13 13 C 1.54584 * 102.78518 * 154.35267 * 12 11 10 14 14 N 1.47140 * 107.32747 * 339.12399 * 13 12 11 15 15 C 1.36937 * 125.60910 * 179.07496 * 14 13 12 16 16 H 1.07993 * 120.00332 * 179.97438 * 15 14 13 17 17 C 1.38814 * 119.99574 * 359.96806 * 15 14 13 18 18 N 1.31617 * 120.00394 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99817 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47097 * 60.00094 * 19 17 15 21 21 H 1.48497 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47155 * 300.00243 * 19 17 15 23 23 C 1.47708 * 108.78921 * 359.06521 * 14 13 12 24 24 C 1.48490 * 127.72998 * 179.97438 * 8 6 3 25 25 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47106 * 299.99866 * 1 2 3 27 27 H 1.08997 * 109.47374 * 59.99648 * 1 2 3 28 28 H 1.09002 * 109.46809 * 240.00558 * 2 1 3 29 29 H 1.08996 * 109.47478 * 119.99807 * 2 1 3 30 30 H 1.09005 * 109.47033 * 60.00346 * 5 3 2 31 31 H 1.08997 * 109.47350 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47361 * 300.00014 * 5 3 2 33 33 H 1.08999 * 110.37178 * 99.90845 * 9 8 6 34 34 H 1.09006 * 110.51405 * 337.44649 * 9 8 6 35 35 H 1.09002 * 110.44786 * 217.71377 * 10 9 8 36 36 H 1.08996 * 110.44784 * 95.29979 * 10 9 8 37 37 H 1.09002 * 110.74503 * 272.67080 * 12 11 10 38 38 H 1.08992 * 110.75262 * 35.84352 * 12 11 10 39 39 H 1.08998 * 109.87637 * 98.55361 * 13 12 11 40 40 H 1.08995 * 109.87469 * 219.54375 * 13 12 11 41 41 H 0.96995 * 120.00319 * 179.97438 * 18 17 15 42 42 H 1.08995 * 110.39510 * 263.79124 * 23 14 13 43 43 H 1.08998 * 110.38791 * 141.40005 * 23 14 13 44 44 H 1.08999 * 110.46904 * 23.03606 * 24 8 6 45 45 H 1.09000 * 110.47563 * 260.42728 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5418 1.4444 -0.1239 7 8 4.1449 0.3953 -0.2048 8 7 4.2148 2.6119 -0.1459 9 6 3.6534 3.9839 -0.0619 10 6 4.5093 4.8159 -1.0469 11 6 5.8237 4.0434 -1.1593 12 6 6.1316 3.6521 -2.6136 13 6 7.6722 3.5247 -2.6146 14 7 8.1761 4.2904 -1.4636 15 6 9.4911 4.4138 -1.1021 16 1 9.7604 5.0011 -0.2368 17 6 10.4779 3.7839 -1.8480 18 7 10.1497 3.0684 -2.9028 19 14 12.2718 3.9515 -1.3544 20 1 12.4602 3.4138 0.0169 21 1 13.1201 3.1893 -2.3054 22 1 12.6609 5.3843 -1.3820 23 6 7.0302 4.9044 -0.7623 24 6 5.6816 2.8132 -0.2606 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0699 1.5875 2.1491 31 1 1.9982 3.1544 1.3072 32 1 0.5490 2.1253 1.3969 33 1 3.7536 4.3735 0.9511 34 1 2.6078 3.9883 -0.3699 35 1 4.6873 5.8143 -0.6472 36 1 4.0195 4.8775 -2.0187 37 1 5.6652 2.6993 -2.8641 38 1 5.8054 4.4326 -3.3008 39 1 7.9575 2.4773 -2.5163 40 1 8.0772 3.9335 -3.5403 41 1 10.8393 2.6285 -3.4242 42 1 6.8884 5.9328 -1.0943 43 1 7.1827 4.8702 0.3164 44 1 6.1502 1.9455 -0.7250 45 1 6.1180 3.0044 0.7197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041088935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:52 Heat of formation + Delta-G solvation = -17.753463 kcal Electronic energy + Delta-G solvation = -23084.909926 eV Core-core repulsion = 19909.617441 eV Total energy + Delta-G solvation = -3175.292484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.31585 -38.58287 -35.65831 -35.46054 -32.64608 -30.68938 -29.85285 -29.14454 -27.97372 -26.02779 -25.14053 -24.15562 -22.29373 -21.26712 -20.20869 -19.00648 -18.64339 -17.07760 -16.58984 -15.75142 -15.63599 -15.18849 -14.62303 -14.15658 -13.85622 -13.79950 -13.73223 -13.46047 -13.11187 -12.58437 -12.40247 -12.32488 -12.04563 -11.90143 -11.79048 -11.61386 -11.41268 -11.32743 -11.17386 -10.94786 -10.84805 -10.81415 -10.73307 -10.18466 -9.99107 -9.93917 -9.72255 -9.60629 -9.49650 -8.56534 -8.51574 -6.79736 -5.67009 -3.00888 2.78791 3.08247 3.43191 3.47287 3.48839 4.41119 4.52992 4.59626 4.75010 4.77659 4.94990 4.98084 5.13951 5.18406 5.29624 5.32245 5.39544 5.41827 5.53214 5.56142 5.61337 5.70589 5.78201 5.86770 5.89044 5.89568 5.95887 6.06857 6.10658 6.12551 6.22053 6.22863 6.39669 6.41351 6.54551 6.67123 6.74654 6.84931 7.59333 7.67065 7.74119 7.87054 8.29381 8.32565 9.25452 9.85852 10.51950 11.44389 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031291 B = 0.003915 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.602663 B = 7150.635723 C = 7461.198844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.106 4.106 4 H 0.094 0.906 5 C -0.150 4.150 6 C 0.533 3.467 7 O -0.542 6.542 8 N -0.623 5.623 9 C 0.101 3.899 10 C -0.121 4.121 11 C -0.086 4.086 12 C -0.130 4.130 13 C 0.178 3.822 14 N -0.605 5.605 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.921 5.921 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.151 3.849 24 C 0.130 3.870 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.252 0.748 42 H 0.023 0.977 43 H 0.039 0.961 44 H 0.086 0.914 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.224 1.214 5.758 21.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.127 4.127 4 H 0.112 0.888 5 C -0.207 4.207 6 C 0.322 3.678 7 O -0.419 6.419 8 N -0.357 5.357 9 C -0.022 4.022 10 C -0.160 4.160 11 C -0.087 4.087 12 C -0.168 4.168 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.024 3.976 24 C 0.008 3.992 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.040 0.960 43 H 0.057 0.943 44 H 0.104 0.896 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.730 0.450 5.634 20.524 hybrid contribution 1.045 0.189 0.141 1.071 sum -18.686 0.639 5.775 19.568 Atomic orbital electron populations 1.21838 0.95596 1.01788 1.01745 1.21343 0.95147 0.94306 1.03572 1.21287 0.91934 0.99170 1.00354 0.88819 1.21944 1.01989 1.00828 0.95969 1.20283 0.89444 0.82130 0.75977 1.90714 1.70302 1.30635 1.50248 1.49266 1.08828 1.05342 1.72231 1.22591 0.97901 0.82005 0.99735 1.22418 0.95265 0.98796 0.99473 1.21632 0.94846 0.95290 0.96973 1.22792 1.00282 1.00007 0.93763 1.21201 0.85962 0.96626 0.90852 1.44563 1.01231 1.57755 1.29630 1.18993 0.80922 1.26566 1.09325 0.90534 1.24799 0.98022 0.99863 0.97696 1.69956 1.31532 1.36572 1.18779 0.86211 0.84696 0.77398 0.77509 1.21186 1.21634 1.21231 1.21412 0.86337 0.93993 0.95836 1.22146 0.79205 0.98506 0.99339 0.92539 0.92521 0.92759 0.91091 0.91355 0.92171 0.91660 0.91400 0.91077 0.90530 0.90143 0.90908 0.92321 0.92342 0.93640 0.94008 0.93724 0.95991 0.94267 0.89557 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.11 -1.11 4.75 -26.73 -0.13 -1.24 16 3 C -0.11 -1.12 2.05 -91.77 -0.19 -1.31 16 4 H 0.09 0.86 7.94 -51.93 -0.41 0.45 16 5 C -0.15 -1.25 8.70 37.16 0.32 -0.93 16 6 C 0.53 8.11 7.27 -10.99 -0.08 8.03 16 7 O -0.54 -10.64 16.20 5.56 0.09 -10.55 16 8 N -0.62 -9.03 3.32 -169.36 -0.56 -9.60 16 9 C 0.10 1.08 5.27 -2.02 -0.01 1.07 16 10 C -0.12 -1.48 6.31 -25.87 -0.16 -1.64 16 11 C -0.09 -1.44 0.81 -153.96 -0.12 -1.56 16 12 C -0.13 -2.47 5.67 -25.53 -0.14 -2.61 16 13 C 0.18 4.39 5.33 -2.86 -0.02 4.38 16 14 N -0.61 -15.39 3.41 -170.50 -0.58 -15.97 16 15 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -27.52 10.31 55.49 0.57 -26.95 16 19 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 C 0.15 3.00 6.10 -3.15 -0.02 2.98 16 24 C 0.13 2.27 6.10 -2.94 -0.02 2.25 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.50 5.33 -51.93 -0.28 0.22 16 32 H 0.07 0.44 6.57 -51.93 -0.34 0.10 16 33 H 0.07 0.67 7.97 -51.93 -0.41 0.26 16 34 H 0.08 0.63 6.63 -51.93 -0.34 0.29 16 35 H 0.08 0.88 7.65 -51.93 -0.40 0.48 16 36 H 0.07 0.84 7.63 -51.93 -0.40 0.45 16 37 H 0.06 1.10 7.97 -51.93 -0.41 0.69 16 38 H 0.06 1.02 7.89 -51.93 -0.41 0.61 16 39 H 0.05 1.26 7.39 -51.93 -0.38 0.88 16 40 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.02 0.43 7.90 -51.93 -0.41 0.02 16 43 H 0.04 0.76 7.69 -51.93 -0.40 0.36 16 44 H 0.09 1.81 7.58 -51.93 -0.39 1.41 16 45 H 0.07 1.23 7.64 -51.93 -0.40 0.83 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -32.68 342.42 -8.57 -41.25 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -7.77 Total: -2.43 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -0.46 Total: 1.72 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.57 Total: -52.52 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.68 -8.57 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041088935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.497 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds