Wall clock time and date at job start Tue Mar 31 2020 03:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47179 * 2 1 4 4 H 1.09005 * 109.46941 * 305.00232 * 3 2 1 5 5 C 1.52995 * 109.47008 * 64.99942 * 3 2 1 6 6 C 1.50691 * 109.47314 * 185.00277 * 3 2 1 7 7 O 1.21282 * 120.00121 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00531 * 179.97438 * 6 3 2 9 9 C 1.48485 * 127.63984 * 359.91341 * 8 6 3 10 10 C 1.54753 * 104.57804 * 218.64418 * 9 8 6 11 11 C 1.52878 * 104.51292 * 336.50924 * 10 9 8 12 12 C 1.53712 * 111.74329 * 122.51011 * 11 10 9 13 13 C 1.54584 * 102.78518 * 154.35267 * 12 11 10 14 14 N 1.47140 * 107.32747 * 339.12399 * 13 12 11 15 15 C 1.36937 * 125.60910 * 179.07496 * 14 13 12 16 16 H 1.07993 * 120.00332 * 179.97438 * 15 14 13 17 17 C 1.38814 * 119.99574 * 359.96806 * 15 14 13 18 18 N 1.31617 * 120.00394 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99817 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47097 * 60.00094 * 19 17 15 21 21 H 1.48497 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47155 * 300.00243 * 19 17 15 23 23 C 1.47708 * 108.78921 * 359.06521 * 14 13 12 24 24 C 1.48490 * 127.72998 * 179.97438 * 8 6 3 25 25 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47106 * 299.99866 * 1 2 3 27 27 H 1.08997 * 109.47374 * 59.99648 * 1 2 3 28 28 H 1.09002 * 109.46809 * 240.00558 * 2 1 3 29 29 H 1.08996 * 109.47478 * 119.99807 * 2 1 3 30 30 H 1.09005 * 109.47033 * 60.00346 * 5 3 2 31 31 H 1.08997 * 109.47350 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47361 * 300.00014 * 5 3 2 33 33 H 1.08999 * 110.37178 * 99.90845 * 9 8 6 34 34 H 1.09006 * 110.51405 * 337.44649 * 9 8 6 35 35 H 1.09002 * 110.44786 * 217.71377 * 10 9 8 36 36 H 1.08996 * 110.44784 * 95.29979 * 10 9 8 37 37 H 1.09002 * 110.74503 * 272.67080 * 12 11 10 38 38 H 1.08992 * 110.75262 * 35.84352 * 12 11 10 39 39 H 1.08998 * 109.87637 * 98.55361 * 13 12 11 40 40 H 1.08995 * 109.87469 * 219.54375 * 13 12 11 41 41 H 0.96995 * 120.00319 * 179.97438 * 18 17 15 42 42 H 1.08995 * 110.39510 * 263.79124 * 23 14 13 43 43 H 1.08998 * 110.38791 * 141.40005 * 23 14 13 44 44 H 1.08999 * 110.46904 * 23.03606 * 24 8 6 45 45 H 1.09000 * 110.47563 * 260.42728 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5418 1.4444 -0.1239 7 8 4.1449 0.3953 -0.2048 8 7 4.2148 2.6119 -0.1459 9 6 3.6534 3.9839 -0.0619 10 6 4.5093 4.8159 -1.0469 11 6 5.8237 4.0434 -1.1593 12 6 6.1316 3.6521 -2.6136 13 6 7.6722 3.5247 -2.6146 14 7 8.1761 4.2904 -1.4636 15 6 9.4911 4.4138 -1.1021 16 1 9.7604 5.0011 -0.2368 17 6 10.4779 3.7839 -1.8480 18 7 10.1497 3.0684 -2.9028 19 14 12.2718 3.9515 -1.3544 20 1 12.4602 3.4138 0.0169 21 1 13.1201 3.1893 -2.3054 22 1 12.6609 5.3843 -1.3820 23 6 7.0302 4.9044 -0.7623 24 6 5.6816 2.8132 -0.2606 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0699 1.5875 2.1491 31 1 1.9982 3.1544 1.3072 32 1 0.5490 2.1253 1.3969 33 1 3.7536 4.3735 0.9511 34 1 2.6078 3.9883 -0.3699 35 1 4.6873 5.8143 -0.6472 36 1 4.0195 4.8775 -2.0187 37 1 5.6652 2.6993 -2.8641 38 1 5.8054 4.4326 -3.3008 39 1 7.9575 2.4773 -2.5163 40 1 8.0772 3.9335 -3.5403 41 1 10.8393 2.6285 -3.4242 42 1 6.8884 5.9328 -1.0943 43 1 7.1827 4.8702 0.3164 44 1 6.1502 1.9455 -0.7250 45 1 6.1180 3.0044 0.7197 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041088935.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:51 Heat of formation + Delta-G solvation = -38.648116 kcal Electronic energy + Delta-G solvation = -23085.815986 eV Core-core repulsion = 19909.617441 eV Total energy + Delta-G solvation = -3176.198545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54872 -39.95024 -37.20799 -36.38335 -34.46767 -32.19375 -30.81922 -30.69789 -29.38138 -27.40240 -26.51294 -25.46003 -23.56885 -22.26151 -22.02523 -20.25486 -19.88329 -18.81014 -17.98095 -16.96063 -16.76505 -16.67470 -16.13041 -15.73265 -15.39460 -14.95583 -14.82320 -14.59725 -14.34835 -13.88192 -13.75740 -13.42076 -13.33102 -13.07286 -12.96936 -12.86917 -12.80343 -12.58273 -12.51178 -12.44176 -12.32682 -12.09268 -11.83885 -11.69213 -11.58217 -11.55611 -11.34490 -11.21061 -10.72746 -10.69743 -9.73107 -8.89469 -7.84738 -5.20378 1.43608 1.47622 1.53662 1.63576 1.96016 2.49198 3.31856 3.43282 3.54810 3.68875 3.73958 3.87830 3.89688 4.00683 4.26875 4.30629 4.38965 4.42550 4.52527 4.55992 4.60977 4.66875 4.71223 4.78321 4.81287 4.91650 4.95740 4.98418 5.02083 5.06385 5.08925 5.14739 5.19519 5.22748 5.35304 5.39703 5.44906 5.45591 5.53144 5.64651 5.74921 6.18708 6.62516 7.09109 7.16121 7.77923 8.42643 9.25578 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031291 B = 0.003915 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.602663 B = 7150.635723 C = 7461.198844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.096 4.096 4 H 0.120 0.880 5 C -0.145 4.145 6 C 0.522 3.478 7 O -0.602 6.602 8 N -0.621 5.621 9 C 0.100 3.900 10 C -0.112 4.112 11 C -0.073 4.073 12 C -0.115 4.115 13 C 0.188 3.812 14 N -0.628 5.628 15 C -0.240 4.240 16 H 0.087 0.913 17 C -0.071 4.071 18 N -0.955 5.955 19 Si 0.979 3.021 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.273 1.273 23 C 0.147 3.853 24 C 0.131 3.869 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.083 0.917 39 H -0.004 1.004 40 H 0.005 0.995 41 H 0.244 0.756 42 H 0.042 0.958 43 H 0.046 0.954 44 H 0.036 0.964 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.448 3.894 7.186 24.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.117 4.117 4 H 0.138 0.862 5 C -0.202 4.202 6 C 0.313 3.687 7 O -0.483 6.483 8 N -0.354 5.354 9 C -0.021 4.021 10 C -0.150 4.150 11 C -0.075 4.075 12 C -0.153 4.153 13 C 0.063 3.937 14 N -0.354 5.354 15 C -0.369 4.369 16 H 0.104 0.896 17 C -0.264 4.264 18 N -0.604 5.604 19 Si 0.807 3.193 20 H -0.204 1.204 21 H -0.224 1.224 22 H -0.198 1.198 23 C 0.022 3.978 24 C 0.008 3.992 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.014 0.986 40 H 0.023 0.977 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.007 3.193 7.097 24.287 hybrid contribution 2.071 -0.666 -0.281 2.193 sum -20.936 2.527 6.817 22.162 Atomic orbital electron populations 1.21792 0.92776 1.02477 1.03125 1.21341 0.97454 0.94188 1.01551 1.21353 0.87823 0.99680 1.02823 0.86212 1.21966 1.03714 1.00909 0.93659 1.21344 0.91463 0.81333 0.74583 1.90688 1.71853 1.32898 1.52843 1.49366 1.07354 1.07155 1.71503 1.22931 0.99421 0.78901 1.00824 1.22442 0.92094 0.99346 1.01166 1.21516 0.96548 0.94974 0.94489 1.22617 0.95540 1.00800 0.96320 1.20879 0.89942 0.93471 0.89408 1.44878 1.02054 1.58109 1.30366 1.19469 0.82469 1.25781 1.09191 0.89552 1.25699 1.02421 1.00218 0.98055 1.70214 1.32206 1.37899 1.20102 0.85144 0.79430 0.77721 0.77008 1.20417 1.22407 1.19828 1.21673 0.85521 0.94881 0.95738 1.21869 0.81543 0.96963 0.98807 0.92379 0.90806 0.91545 0.93635 0.93132 0.93598 0.90204 0.88614 0.88808 0.86685 0.87622 0.89303 0.92675 0.89870 0.98557 0.97680 0.94656 0.94065 0.93576 0.94558 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.67 71.98 0.70 -1.10 16 2 C -0.11 -2.15 4.75 30.60 0.15 -2.01 16 3 C -0.10 -1.78 2.05 -11.54 -0.02 -1.80 16 4 H 0.12 1.65 7.94 -2.38 -0.02 1.63 16 5 C -0.15 -1.82 8.70 71.98 0.63 -1.20 16 6 C 0.52 15.63 7.27 87.65 0.64 16.27 16 7 O -0.60 -24.91 16.20 -3.04 -0.05 -24.96 16 8 N -0.62 -17.01 3.32 -808.12 -2.69 -19.69 16 9 C 0.10 1.64 5.27 86.59 0.46 2.10 16 10 C -0.11 -2.20 6.31 31.15 0.20 -2.01 16 11 C -0.07 -2.36 0.81 -51.83 -0.04 -2.40 16 12 C -0.11 -4.35 5.67 31.37 0.18 -4.18 16 13 C 0.19 9.81 5.33 86.80 0.46 10.27 16 14 N -0.63 -32.69 3.41 -693.33 -2.36 -35.06 16 15 C -0.24 -13.71 10.28 84.03 0.86 -12.85 16 16 H 0.09 4.63 7.83 -2.91 -0.02 4.61 16 17 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 18 N -0.95 -60.25 10.31 21.65 0.22 -60.03 16 19 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 C 0.15 5.64 6.10 86.30 0.53 6.17 16 24 C 0.13 4.65 6.10 86.00 0.52 5.17 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.68 6.57 -2.39 -0.02 0.66 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 0.72 8.14 -2.38 -0.02 0.71 16 31 H 0.08 0.78 5.33 -2.39 -0.01 0.77 16 32 H 0.10 0.72 6.57 -2.39 -0.02 0.71 16 33 H 0.09 1.21 7.97 -2.39 -0.02 1.19 16 34 H 0.12 1.11 6.63 -2.38 -0.02 1.09 16 35 H 0.11 1.66 7.65 -2.39 -0.02 1.64 16 36 H 0.09 1.55 7.63 -2.39 -0.02 1.53 16 37 H 0.05 2.13 7.97 -2.39 -0.02 2.11 16 38 H 0.08 2.76 7.89 -2.39 -0.02 2.74 16 39 H 0.00 -0.23 7.39 -2.39 -0.02 -0.25 16 40 H 0.00 0.29 7.50 -2.39 -0.02 0.27 16 41 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.04 1.48 7.90 -2.39 -0.02 1.46 16 43 H 0.05 1.71 7.69 -2.39 -0.02 1.69 16 44 H 0.04 1.63 7.58 -2.39 -0.02 1.61 16 45 H 0.07 2.36 7.64 -2.39 -0.02 2.34 16 Total: -1.00 -79.04 342.42 3.81 -75.23 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 0.95 Total: 6.57 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 5.71 Total: 8.70 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -4.83 Total: -114.78 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.05 Total: -24.96 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -79.04 3.81 -75.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041088935.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.581 kcal (2) G-P(sol) polarization free energy of solvation -79.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds