Wall clock time and date at job start Tue Mar 31 2020 03:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47349 * 2 1 4 4 H 1.08999 * 109.47193 * 304.99945 * 3 2 1 5 5 C 1.52998 * 109.47071 * 65.00153 * 3 2 1 6 6 C 1.50708 * 109.46945 * 184.99872 * 3 2 1 7 7 O 1.21274 * 119.99925 * 325.27713 * 6 3 2 8 8 N 1.34778 * 119.99299 * 145.27883 * 6 3 2 9 9 C 1.47555 * 125.67898 * 4.69629 * 8 6 3 10 10 C 1.55445 * 104.87937 * 156.03379 * 9 8 6 11 11 C 1.53657 * 101.30727 * 35.83038 * 10 9 8 12 12 C 1.53659 * 111.41849 * 204.77243 * 11 10 9 13 13 C 1.55189 * 101.41720 * 272.74014 * 12 11 10 14 14 N 1.47565 * 105.00493 * 324.50195 * 13 12 11 15 15 C 1.36937 * 125.67572 * 203.83443 * 14 13 12 16 16 H 1.07997 * 120.00071 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99809 * 0.03639 * 15 14 13 18 18 N 1.31619 * 120.00146 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99745 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47159 * 60.00515 * 19 17 15 21 21 H 1.48501 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47394 * 300.00399 * 19 17 15 23 23 C 1.47403 * 108.64988 * 23.86687 * 14 13 12 24 24 C 1.47412 * 125.66819 * 185.00921 * 8 6 3 25 25 H 1.09006 * 109.47573 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47055 * 299.99988 * 1 2 3 27 27 H 1.09000 * 109.47277 * 60.00385 * 1 2 3 28 28 H 1.09008 * 109.47349 * 239.99377 * 2 1 3 29 29 H 1.09005 * 109.47145 * 120.00345 * 2 1 3 30 30 H 1.09003 * 109.46978 * 293.97207 * 5 3 2 31 31 H 1.09003 * 109.47153 * 173.97282 * 5 3 2 32 32 H 1.08996 * 109.47111 * 53.97030 * 5 3 2 33 33 H 1.08997 * 110.33427 * 275.02153 * 9 8 6 34 34 H 1.08998 * 110.33092 * 37.26424 * 9 8 6 35 35 H 1.08994 * 111.25105 * 277.76006 * 10 9 8 36 36 H 1.08993 * 110.94569 * 153.76918 * 10 9 8 37 37 H 1.09003 * 111.03369 * 30.76508 * 12 11 10 38 38 H 1.08993 * 111.03405 * 154.69959 * 12 11 10 39 39 H 1.09003 * 110.33016 * 205.62402 * 13 12 11 40 40 H 1.08989 * 110.42729 * 83.43226 * 13 12 11 41 41 H 0.96999 * 119.99721 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.98814 * 238.53385 * 23 14 13 43 43 H 1.08999 * 109.98649 * 117.23109 * 23 14 13 44 44 H 1.09001 * 109.98551 * 301.45985 * 24 8 6 45 45 H 1.09003 * 109.98527 * 62.72511 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4442 -0.1238 7 8 4.1943 0.5646 0.3973 8 7 4.1600 2.4233 -0.8136 9 6 3.5030 3.6013 -1.4117 10 6 4.6249 4.6716 -1.5209 11 6 5.8431 3.7979 -1.8583 12 6 7.1548 4.4757 -1.4329 13 6 7.4784 5.3322 -2.6859 14 7 7.0259 4.5195 -3.8315 15 6 7.4906 4.6208 -5.1156 16 1 7.0927 3.9773 -5.8862 17 6 8.4734 5.5505 -5.4267 18 7 8.9588 6.3343 -4.4874 19 14 9.1068 5.6892 -7.1786 20 1 7.9833 6.0378 -8.0850 21 1 10.1455 6.7483 -7.2470 22 1 9.6954 4.3914 -7.5963 23 6 5.9899 3.5811 -3.3638 24 6 5.6041 2.4920 -1.1016 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5501 2.2211 1.3471 31 1 2.0883 3.1168 1.3547 32 1 1.9790 1.5289 2.1516 33 1 3.1121 3.3563 -2.3993 34 1 2.7020 3.9577 -0.7640 35 1 4.7673 5.1927 -0.5742 36 1 4.4142 5.3764 -2.3252 37 1 7.0033 5.1060 -0.5567 38 1 7.9357 3.7373 -1.2514 39 1 8.5507 5.5164 -2.7522 40 1 6.9340 6.2759 -2.6525 41 1 9.6458 6.9837 -4.7048 42 1 6.2988 2.5550 -3.5640 43 1 5.0445 3.7902 -3.8642 44 1 6.1702 2.4921 -0.1701 45 1 5.9018 1.6437 -1.7181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041088938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:56 Heat of formation + Delta-G solvation = -21.617805 kcal Electronic energy + Delta-G solvation = -22875.083928 eV Core-core repulsion = 19699.623873 eV Total energy + Delta-G solvation = -3175.460055 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.41110 -38.69268 -35.73847 -35.44087 -32.72163 -30.56824 -29.87176 -29.34002 -28.28275 -25.99286 -25.17454 -23.70330 -22.72325 -21.27260 -20.33165 -19.06074 -18.56075 -17.18552 -16.70252 -15.97437 -15.41588 -15.00365 -14.83269 -14.46457 -14.17808 -13.83694 -13.64756 -13.12675 -12.96106 -12.67910 -12.45803 -12.37953 -12.29287 -11.92675 -11.89266 -11.71634 -11.51737 -11.40073 -11.20281 -10.99008 -10.91532 -10.88181 -10.76057 -10.23891 -10.04805 -9.97511 -9.77595 -9.65473 -9.45919 -8.65423 -8.53458 -6.84387 -5.66182 -3.07648 2.67802 3.03997 3.39995 3.44341 3.45511 4.36714 4.47900 4.55428 4.71773 4.74383 4.88941 5.00752 5.13461 5.16504 5.24778 5.33109 5.37297 5.42357 5.47270 5.50725 5.59318 5.66675 5.77047 5.80172 5.81811 5.83566 5.97267 6.03543 6.05502 6.10689 6.17559 6.25898 6.30657 6.35352 6.54051 6.64167 6.73785 6.83410 7.49776 7.60965 7.61450 7.84687 8.22809 8.34860 9.21065 9.81676 10.46935 11.37749 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035731 B = 0.003568 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.443246 B = 7846.228127 C = 8082.599726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.107 4.107 4 H 0.089 0.911 5 C -0.140 4.140 6 C 0.530 3.470 7 O -0.546 6.546 8 N -0.617 5.617 9 C 0.099 3.901 10 C -0.113 4.113 11 C -0.082 4.082 12 C -0.131 4.131 13 C 0.155 3.845 14 N -0.604 5.604 15 C -0.223 4.223 16 H 0.076 0.924 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.914 3.086 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.152 3.848 24 C 0.124 3.876 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.013 0.987 41 H 0.252 0.748 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.068 0.932 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.393 -5.917 10.028 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.128 4.128 4 H 0.107 0.893 5 C -0.198 4.198 6 C 0.319 3.681 7 O -0.424 6.424 8 N -0.350 5.350 9 C -0.024 4.024 10 C -0.151 4.151 11 C -0.083 4.083 12 C -0.170 4.170 13 C 0.030 3.970 14 N -0.330 5.330 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.026 3.974 24 C 0.002 3.998 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.031 0.969 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.087 0.913 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.922 -6.322 10.213 19.155 hybrid contribution 0.296 0.193 -1.042 1.100 sum -14.625 -6.129 9.171 18.319 Atomic orbital electron populations 1.21818 0.95337 1.01847 1.01917 1.21388 0.95610 0.94237 1.03307 1.21318 0.91774 0.99128 1.00607 0.89303 1.21745 1.01800 1.00412 0.95803 1.20351 0.89963 0.80388 0.77440 1.90677 1.67467 1.37117 1.47128 1.48766 1.09269 1.23298 1.53708 1.22524 0.96245 0.85494 0.98127 1.22671 0.93275 0.96545 1.02596 1.21548 0.96405 0.93511 0.96854 1.22873 0.94633 0.99514 0.99966 1.21960 1.02763 0.90353 0.81895 1.44616 1.42430 1.40038 1.05926 1.19031 1.16043 1.15859 0.84218 0.90591 1.24775 0.99408 0.98440 0.97982 1.69789 1.31672 1.24980 1.30686 0.86157 0.78322 0.77267 0.83774 1.21235 1.21576 1.21169 1.21124 0.92589 0.93948 0.89737 1.21894 0.80465 0.97932 0.99546 0.92499 0.92391 0.92677 0.91755 0.90820 0.91307 0.92301 0.91825 0.91141 0.90886 0.90732 0.89224 0.92030 0.91862 0.87734 0.96907 0.93686 0.95738 0.95914 0.91348 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.67 37.15 0.36 -0.75 16 2 C -0.11 -1.06 4.97 -26.73 -0.13 -1.19 16 3 C -0.11 -1.10 2.16 -91.77 -0.20 -1.30 16 4 H 0.09 0.79 7.14 -51.93 -0.37 0.42 16 5 C -0.14 -1.21 8.78 37.16 0.33 -0.89 16 6 C 0.53 7.63 6.85 -10.98 -0.08 7.56 16 7 O -0.55 -9.87 16.70 5.56 0.09 -9.78 16 8 N -0.62 -8.72 3.34 -170.69 -0.57 -9.29 16 9 C 0.10 1.17 6.15 -2.17 -0.01 1.15 16 10 C -0.11 -1.57 5.87 -25.09 -0.15 -1.71 16 11 C -0.08 -1.37 0.61 -154.02 -0.09 -1.47 16 12 C -0.13 -2.41 5.93 -25.23 -0.15 -2.56 16 13 C 0.16 3.65 5.83 -2.30 -0.01 3.64 16 14 N -0.60 -15.17 3.41 -170.41 -0.58 -15.75 16 15 C -0.22 -6.16 10.28 -15.06 -0.15 -6.32 16 16 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -26.60 10.09 55.49 0.56 -26.04 16 19 Si 0.91 21.93 29.55 -169.99 -5.02 16.90 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 C 0.15 3.09 6.39 -3.64 -0.02 3.07 16 24 C 0.12 1.97 6.14 -3.64 -0.02 1.95 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.38 6.70 -51.93 -0.35 0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 29 H 0.07 0.80 8.02 -51.93 -0.42 0.38 16 30 H 0.07 0.46 6.87 -51.93 -0.36 0.10 16 31 H 0.06 0.51 7.99 -51.93 -0.41 0.09 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.68 7.53 -51.93 -0.39 0.29 16 35 H 0.07 0.96 7.82 -51.93 -0.41 0.55 16 36 H 0.09 1.32 7.94 -51.93 -0.41 0.91 16 37 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16 38 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 39 H 0.10 2.81 5.89 -51.93 -0.31 2.51 16 40 H 0.01 0.32 8.14 -51.94 -0.42 -0.10 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.02 0.52 7.44 -51.93 -0.39 0.13 16 43 H 0.02 0.46 7.78 -51.93 -0.40 0.05 16 44 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 45 H 0.07 1.16 7.42 -51.93 -0.39 0.78 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -31.32 346.76 -8.64 -39.96 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.91 Total: -2.02 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -0.43 Total: 0.79 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.59 Total: -51.08 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.32 -8.64 -39.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041088938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.338 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds