Wall clock time and date at job start Tue Mar 31 2020 03:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47349 * 2 1 4 4 H 1.08999 * 109.47193 * 304.99945 * 3 2 1 5 5 C 1.52998 * 109.47071 * 65.00153 * 3 2 1 6 6 C 1.50708 * 109.46945 * 184.99872 * 3 2 1 7 7 O 1.21274 * 119.99925 * 325.27713 * 6 3 2 8 8 N 1.34778 * 119.99299 * 145.27883 * 6 3 2 9 9 C 1.47555 * 125.67898 * 4.69629 * 8 6 3 10 10 C 1.55445 * 104.87937 * 156.03379 * 9 8 6 11 11 C 1.53657 * 101.30727 * 35.83038 * 10 9 8 12 12 C 1.53659 * 111.41849 * 204.77243 * 11 10 9 13 13 C 1.55189 * 101.41720 * 272.74014 * 12 11 10 14 14 N 1.47565 * 105.00493 * 324.50195 * 13 12 11 15 15 C 1.36937 * 125.67572 * 203.83443 * 14 13 12 16 16 H 1.07997 * 120.00071 * 180.02562 * 15 14 13 17 17 C 1.38813 * 119.99809 * 0.03639 * 15 14 13 18 18 N 1.31619 * 120.00146 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99745 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47159 * 60.00515 * 19 17 15 21 21 H 1.48501 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47394 * 300.00399 * 19 17 15 23 23 C 1.47403 * 108.64988 * 23.86687 * 14 13 12 24 24 C 1.47412 * 125.66819 * 185.00921 * 8 6 3 25 25 H 1.09006 * 109.47573 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47055 * 299.99988 * 1 2 3 27 27 H 1.09000 * 109.47277 * 60.00385 * 1 2 3 28 28 H 1.09008 * 109.47349 * 239.99377 * 2 1 3 29 29 H 1.09005 * 109.47145 * 120.00345 * 2 1 3 30 30 H 1.09003 * 109.46978 * 293.97207 * 5 3 2 31 31 H 1.09003 * 109.47153 * 173.97282 * 5 3 2 32 32 H 1.08996 * 109.47111 * 53.97030 * 5 3 2 33 33 H 1.08997 * 110.33427 * 275.02153 * 9 8 6 34 34 H 1.08998 * 110.33092 * 37.26424 * 9 8 6 35 35 H 1.08994 * 111.25105 * 277.76006 * 10 9 8 36 36 H 1.08993 * 110.94569 * 153.76918 * 10 9 8 37 37 H 1.09003 * 111.03369 * 30.76508 * 12 11 10 38 38 H 1.08993 * 111.03405 * 154.69959 * 12 11 10 39 39 H 1.09003 * 110.33016 * 205.62402 * 13 12 11 40 40 H 1.08989 * 110.42729 * 83.43226 * 13 12 11 41 41 H 0.96999 * 119.99721 * 179.97438 * 18 17 15 42 42 H 1.09005 * 109.98814 * 238.53385 * 23 14 13 43 43 H 1.08999 * 109.98649 * 117.23109 * 23 14 13 44 44 H 1.09001 * 109.98551 * 301.45985 * 24 8 6 45 45 H 1.09003 * 109.98527 * 62.72511 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5420 1.4442 -0.1238 7 8 4.1943 0.5646 0.3973 8 7 4.1600 2.4233 -0.8136 9 6 3.5030 3.6013 -1.4117 10 6 4.6249 4.6716 -1.5209 11 6 5.8431 3.7979 -1.8583 12 6 7.1548 4.4757 -1.4329 13 6 7.4784 5.3322 -2.6859 14 7 7.0259 4.5195 -3.8315 15 6 7.4906 4.6208 -5.1156 16 1 7.0927 3.9773 -5.8862 17 6 8.4734 5.5505 -5.4267 18 7 8.9588 6.3343 -4.4874 19 14 9.1068 5.6892 -7.1786 20 1 7.9833 6.0378 -8.0850 21 1 10.1455 6.7483 -7.2470 22 1 9.6954 4.3914 -7.5963 23 6 5.9899 3.5811 -3.3638 24 6 5.6041 2.4920 -1.1016 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 0.5501 2.2211 1.3471 31 1 2.0883 3.1168 1.3547 32 1 1.9790 1.5289 2.1516 33 1 3.1121 3.3563 -2.3993 34 1 2.7020 3.9577 -0.7640 35 1 4.7673 5.1927 -0.5742 36 1 4.4142 5.3764 -2.3252 37 1 7.0033 5.1060 -0.5567 38 1 7.9357 3.7373 -1.2514 39 1 8.5507 5.5164 -2.7522 40 1 6.9340 6.2759 -2.6525 41 1 9.6458 6.9837 -4.7048 42 1 6.2988 2.5550 -3.5640 43 1 5.0445 3.7902 -3.8642 44 1 6.1702 2.4921 -0.1701 45 1 5.9018 1.6437 -1.7181 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041088938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:05:55 Heat of formation + Delta-G solvation = -39.984124 kcal Electronic energy + Delta-G solvation = -22875.880351 eV Core-core repulsion = 19699.623873 eV Total energy + Delta-G solvation = -3176.256478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.61562 -40.01125 -37.22307 -36.35034 -34.50337 -32.12348 -30.78453 -30.71925 -29.70797 -27.53275 -26.34369 -25.03478 -23.96491 -22.28177 -22.07451 -20.30753 -19.73188 -18.85088 -18.08739 -17.08592 -16.83096 -16.43512 -15.99172 -15.85119 -15.62501 -15.34498 -14.50409 -14.32284 -14.12682 -14.01022 -13.81105 -13.57945 -13.39270 -13.13575 -13.01292 -12.95064 -12.77228 -12.67627 -12.59866 -12.50778 -12.39823 -12.05816 -11.78152 -11.70649 -11.60338 -11.52502 -11.48710 -11.19799 -10.74185 -10.69441 -9.69876 -8.87655 -7.76840 -5.20703 1.46903 1.49714 1.56092 1.58572 1.95777 2.49868 3.28191 3.38134 3.54862 3.62674 3.67752 3.81555 3.91000 4.01479 4.22773 4.25060 4.35315 4.40063 4.53028 4.59454 4.61674 4.63185 4.71786 4.73560 4.76468 4.85247 4.89791 4.97578 5.00922 5.05939 5.06375 5.14186 5.18890 5.21907 5.30488 5.33221 5.37999 5.46806 5.49568 5.65710 5.83324 6.31720 6.52723 7.11667 7.11939 7.78560 8.42810 9.24768 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035731 B = 0.003568 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.443246 B = 7846.228127 C = 8082.599726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.100 4.100 4 H 0.111 0.889 5 C -0.137 4.137 6 C 0.524 3.476 7 O -0.591 6.591 8 N -0.617 5.617 9 C 0.103 3.897 10 C -0.108 4.108 11 C -0.072 4.072 12 C -0.117 4.117 13 C 0.160 3.840 14 N -0.626 5.626 15 C -0.241 4.241 16 H 0.078 0.922 17 C -0.065 4.065 18 N -0.948 5.948 19 Si 0.979 3.021 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.280 1.280 23 C 0.151 3.849 24 C 0.130 3.870 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.067 0.933 40 H -0.004 1.004 41 H 0.247 0.753 42 H 0.015 0.985 43 H 0.031 0.969 44 H 0.066 0.934 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.002 -5.722 10.470 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.121 4.121 4 H 0.129 0.871 5 C -0.194 4.194 6 C 0.315 3.685 7 O -0.472 6.472 8 N -0.350 5.350 9 C -0.019 4.019 10 C -0.146 4.146 11 C -0.073 4.073 12 C -0.156 4.156 13 C 0.035 3.965 14 N -0.352 5.352 15 C -0.370 4.370 16 H 0.096 0.904 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.807 3.193 20 H -0.203 1.203 21 H -0.219 1.219 22 H -0.206 1.206 23 C 0.026 3.974 24 C 0.007 3.993 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.014 0.986 41 H 0.057 0.943 42 H 0.033 0.967 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.570 -6.131 10.655 21.443 hybrid contribution 1.131 0.092 -1.189 1.643 sum -16.439 -6.038 9.467 19.908 Atomic orbital electron populations 1.21783 0.92943 1.02554 1.03016 1.21385 0.97590 0.93788 1.01820 1.21401 0.88361 0.99846 1.02510 0.87050 1.21765 1.03552 1.00023 0.94097 1.21206 0.91636 0.79409 0.76288 1.90656 1.68771 1.38802 1.48976 1.48855 1.08456 1.24107 1.53575 1.22663 0.96120 0.83709 0.99381 1.22660 0.92270 0.96581 1.03110 1.21381 0.96978 0.94694 0.94242 1.22723 0.95456 0.98962 0.98474 1.21719 1.00160 0.90716 0.83939 1.44906 1.43655 1.40952 1.05680 1.19399 1.16192 1.15792 0.85609 0.90414 1.25594 0.99881 0.98483 1.01777 1.70045 1.31978 1.25410 1.32293 0.85151 0.77647 0.77069 0.79446 1.20296 1.21899 1.20602 1.21250 0.91522 0.92335 0.92294 1.21640 0.82187 0.96603 0.98907 0.92135 0.91114 0.91642 0.93236 0.92496 0.88576 0.91832 0.93100 0.90357 0.87162 0.89012 0.89957 0.89240 0.92411 0.91454 0.98575 0.94316 0.96720 0.95069 0.91537 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.67 71.98 0.70 -0.99 16 2 C -0.11 -1.94 4.97 30.59 0.15 -1.79 16 3 C -0.10 -1.78 2.16 -11.54 -0.02 -1.81 16 4 H 0.11 1.50 7.14 -2.39 -0.02 1.49 16 5 C -0.14 -1.90 8.78 71.98 0.63 -1.27 16 6 C 0.52 14.28 6.85 87.66 0.60 14.88 16 7 O -0.59 -21.34 16.70 -3.01 -0.05 -21.39 16 8 N -0.62 -16.16 3.34 -812.33 -2.71 -18.88 16 9 C 0.10 2.06 6.15 87.02 0.53 2.60 16 10 C -0.11 -2.72 5.87 31.66 0.19 -2.53 16 11 C -0.07 -2.33 0.61 -51.87 -0.03 -2.36 16 12 C -0.12 -4.27 5.93 31.57 0.19 -4.08 16 13 C 0.16 7.69 5.83 86.93 0.51 8.20 16 14 N -0.63 -31.97 3.41 -693.04 -2.36 -34.33 16 15 C -0.24 -13.53 10.28 84.03 0.86 -12.66 16 16 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 17 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 18 N -0.95 -56.15 10.09 21.65 0.22 -55.93 16 19 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 C 0.15 6.13 6.39 86.14 0.55 6.68 16 24 C 0.13 4.02 6.14 86.14 0.53 4.54 16 25 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.07 0.65 6.70 -2.39 -0.02 0.64 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.06 1.21 8.02 -2.38 -0.02 1.19 16 30 H 0.10 0.83 6.87 -2.39 -0.02 0.82 16 31 H 0.06 0.84 7.99 -2.39 -0.02 0.82 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 1.47 7.53 -2.39 -0.02 1.45 16 35 H 0.09 2.03 7.82 -2.39 -0.02 2.01 16 36 H 0.08 2.24 7.94 -2.39 -0.02 2.22 16 37 H 0.09 2.75 7.78 -2.39 -0.02 2.73 16 38 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 39 H 0.07 3.77 5.89 -2.39 -0.01 3.76 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 42 H 0.01 0.63 7.44 -2.38 -0.02 0.61 16 43 H 0.03 1.22 7.78 -2.39 -0.02 1.20 16 44 H 0.07 2.10 7.86 -2.39 -0.02 2.08 16 45 H 0.05 1.78 7.42 -2.39 -0.02 1.76 16 Total: -1.00 -70.32 346.76 3.91 -66.41 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.94 Total: 10.30 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 5.85 Total: 6.21 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -4.86 Total: -109.14 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.05 Total: -21.39 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -70.32 3.91 -66.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041088938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.430 kcal (2) G-P(sol) polarization free energy of solvation -70.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds