Wall clock time and date at job start Tue Mar 31 2020 03:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46931 * 2 1 4 4 H 1.08994 * 109.46850 * 305.00126 * 3 2 1 5 5 C 1.53002 * 109.46909 * 64.99592 * 3 2 1 6 6 C 1.50692 * 109.47133 * 184.99644 * 3 2 1 7 7 O 1.21279 * 120.00110 * 343.47608 * 6 3 2 8 8 N 1.34982 * 120.00010 * 163.74590 * 6 3 2 9 9 C 1.44689 * 120.08167 * 185.17836 * 8 6 3 10 10 C 1.51293 * 113.54960 * 267.43133 * 9 8 6 11 11 C 1.51098 * 114.59102 * 297.34105 * 10 9 8 12 12 H 1.09745 * 110.73946 * 177.50774 * 11 10 9 13 13 C 1.54164 * 108.53417 * 299.42383 * 11 10 9 14 14 C 1.54013 * 104.65393 * 91.77870 * 13 11 10 15 15 C 1.52099 * 105.50528 * 12.91351 * 14 13 11 16 16 H 1.09332 * 108.38505 * 122.06268 * 15 14 13 17 17 C 1.49325 * 119.97245 * 4.73353 * 8 6 3 18 18 N 1.47776 * 109.55775 * 4.08090 * 15 14 13 19 19 C 1.37123 * 127.12088 * 159.46285 * 18 15 14 20 20 H 1.08001 * 119.99869 * 166.53977 * 19 18 15 21 21 C 1.38807 * 120.00328 * 346.53985 * 19 18 15 22 22 N 1.31622 * 120.00131 * 4.19226 * 21 19 18 23 23 Si 1.86798 * 120.00280 * 184.19031 * 21 19 18 24 24 H 1.48506 * 109.47030 * 90.00029 * 23 21 19 25 25 H 1.48502 * 109.47347 * 209.99988 * 23 21 19 26 26 H 1.48503 * 109.47113 * 330.00292 * 23 21 19 27 27 H 1.09007 * 109.46879 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47406 * 299.99766 * 1 2 3 29 29 H 1.08997 * 109.47173 * 60.00179 * 1 2 3 30 30 H 1.08997 * 109.47406 * 240.00234 * 2 1 3 31 31 H 1.09005 * 109.47031 * 119.99570 * 2 1 3 32 32 H 1.09000 * 109.47646 * 305.12723 * 5 3 2 33 33 H 1.09001 * 109.46995 * 65.13132 * 5 3 2 34 34 H 1.09007 * 109.46749 * 185.12729 * 5 3 2 35 35 H 1.09445 * 108.33710 * 28.01937 * 9 8 6 36 36 H 1.08979 * 109.13680 * 145.26870 * 9 8 6 37 37 H 1.09251 * 108.80853 * 59.26888 * 10 9 8 38 38 H 1.09422 * 108.41523 * 176.08863 * 10 9 8 39 39 H 1.09340 * 110.58981 * 210.79557 * 13 11 10 40 40 H 1.09273 * 110.69940 * 332.58713 * 13 11 10 41 41 H 1.09059 * 110.63350 * 253.34993 * 14 13 11 42 42 H 1.09272 * 110.27743 * 131.83795 * 14 13 11 43 43 H 1.09084 * 109.54604 * 254.71411 * 17 8 6 44 44 H 1.09088 * 109.56047 * 14.57921 * 17 8 6 45 45 H 0.96994 * 120.00184 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5418 1.4444 -0.1237 7 8 4.1696 0.4300 0.0948 8 7 4.1889 2.5765 -0.4725 9 6 5.6175 2.5543 -0.7011 10 6 6.4317 2.8930 0.5282 11 6 6.2080 4.2872 1.0660 12 1 6.7939 4.4500 1.9796 13 6 6.5999 5.3024 -0.0259 14 6 5.2930 5.5712 -0.7952 15 6 4.1861 4.9815 0.0652 16 1 3.4747 5.7765 0.3045 17 6 3.4282 3.8515 -0.6324 18 7 4.7590 4.4754 1.3299 19 6 4.0919 4.2381 2.5042 20 1 4.5668 3.6688 3.2895 21 6 2.8062 4.7295 2.6835 22 7 2.1959 5.3519 1.6973 23 14 1.9419 4.5077 4.3246 24 1 2.2405 5.6679 5.2022 25 1 0.4760 4.4182 4.1040 26 1 2.4220 3.2606 4.9723 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 0.5564 2.0451 1.4412 33 1 2.1424 1.6435 2.1424 34 1 1.9181 3.1786 1.2697 35 1 5.8969 1.5507 -1.0368 36 1 5.8625 3.2548 -1.4991 37 1 6.1982 2.1719 1.3150 38 1 7.4921 2.7834 0.2815 39 1 6.9762 6.2251 0.4241 40 1 7.3579 4.8812 -0.6908 41 1 5.3161 5.0882 -1.7727 42 1 5.1410 6.6462 -0.9195 43 1 3.3221 4.0826 -1.6932 44 1 2.4385 3.7447 -0.1864 45 1 1.2976 5.6956 1.8227 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045716874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:14 Heat of formation + Delta-G solvation = -10.673534 kcal Electronic energy + Delta-G solvation = -25030.595133 eV Core-core repulsion = 21855.609657 eV Total energy + Delta-G solvation = -3174.985476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.87739 -38.03058 -34.99052 -33.92779 -33.10232 -31.71483 -29.47132 -29.26988 -27.10455 -25.63806 -24.56434 -23.86667 -22.39984 -20.54417 -19.60781 -19.05373 -17.82437 -17.01048 -16.21995 -15.21380 -14.86594 -14.84993 -14.48659 -14.36832 -13.86596 -13.38194 -13.09287 -12.73891 -12.54658 -12.32701 -12.02868 -11.71530 -11.68949 -11.44610 -11.35593 -11.24744 -11.08901 -10.96699 -10.87933 -10.73534 -10.66083 -10.23705 -10.19033 -10.12578 -9.86592 -9.64184 -9.49032 -9.37551 -8.87441 -8.53549 -7.71595 -6.86885 -5.75844 -3.17996 3.34164 3.41272 3.43176 3.45428 3.92201 4.40898 5.10843 5.28374 5.30333 5.35449 5.42633 5.53369 5.64075 5.68512 5.73378 5.84656 5.87730 5.93444 6.02025 6.03778 6.08852 6.18354 6.22206 6.26871 6.30513 6.39735 6.49346 6.52950 6.55090 6.64832 6.68078 6.70180 6.74311 6.84095 6.87776 7.08133 7.17871 7.43335 7.57087 7.64456 7.72125 8.25347 8.30368 9.04286 9.13577 9.71116 10.45444 11.26050 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.010788 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.630162 B = 2594.887907 C = 3931.894931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C -0.102 4.102 4 H 0.080 0.920 5 C -0.170 4.170 6 C 0.526 3.474 7 O -0.570 6.570 8 N -0.582 5.582 9 C 0.134 3.866 10 C -0.143 4.143 11 C 0.154 3.846 12 H 0.056 0.944 13 C -0.125 4.125 14 C -0.127 4.127 15 C 0.135 3.865 16 H 0.128 0.872 17 C 0.101 3.899 18 N -0.576 5.576 19 C -0.195 4.195 20 H 0.073 0.927 21 C -0.004 4.004 22 N -0.921 5.921 23 Si 0.896 3.104 24 H -0.290 1.290 25 H -0.288 1.288 26 H -0.282 1.282 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.129 0.871 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.034 0.966 44 H 0.105 0.895 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 -1.796 -6.449 6.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C -0.123 4.123 4 H 0.099 0.901 5 C -0.227 4.227 6 C 0.314 3.686 7 O -0.451 6.451 8 N -0.313 5.313 9 C 0.010 3.990 10 C -0.184 4.184 11 C 0.046 3.954 12 H 0.074 0.926 13 C -0.164 4.164 14 C -0.165 4.165 15 C 0.028 3.972 16 H 0.145 0.855 17 C -0.022 4.022 18 N -0.298 5.298 19 C -0.323 4.323 20 H 0.091 0.909 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.727 3.273 24 H -0.217 1.217 25 H -0.214 1.214 26 H -0.208 1.208 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.147 0.853 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.123 0.877 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.172 -2.267 -6.189 6.694 hybrid contribution -0.403 -0.175 0.856 0.962 sum 0.769 -2.442 -5.333 5.915 Atomic orbital electron populations 1.21833 0.96063 1.01017 1.01938 1.21328 0.94897 0.95448 1.02455 1.21217 0.92329 0.97673 1.01093 0.90131 1.22377 0.99925 1.06257 0.94191 1.20574 0.90008 0.82651 0.75335 1.90570 1.69275 1.33794 1.51422 1.47969 1.07044 1.09208 1.67053 1.20370 0.81384 1.00533 0.96737 1.21889 0.97634 1.00192 0.98675 1.21038 0.87745 0.91553 0.95020 0.92628 1.22484 0.96946 0.99200 0.97787 1.22179 0.96093 1.00136 0.98083 1.21499 0.94540 0.96239 0.84883 0.85532 1.23245 0.98043 0.83569 0.97376 1.44805 1.00873 1.76239 1.07911 1.19010 0.96824 1.25671 0.90825 0.90904 1.24653 0.97382 1.00371 0.97355 1.69547 1.13994 1.44002 1.29560 0.86344 0.79048 0.77801 0.84118 1.21685 1.21388 1.20752 0.93137 0.92281 0.93002 0.92417 0.91509 0.93365 0.93180 0.85283 0.92284 0.92130 0.92586 0.93219 0.92539 0.92443 0.92845 0.92458 0.94733 0.87726 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.10 -1.72 4.74 -26.73 -0.13 -1.85 16 3 C -0.10 -1.90 1.87 -91.77 -0.17 -2.07 16 4 H 0.08 1.40 7.39 -51.93 -0.38 1.01 16 5 C -0.17 -3.47 8.61 37.16 0.32 -3.15 16 6 C 0.53 11.20 6.88 -10.90 -0.07 11.12 16 7 O -0.57 -13.56 15.66 5.56 0.09 -13.48 16 8 N -0.58 -11.72 2.55 -173.54 -0.44 -12.16 16 9 C 0.13 2.49 4.95 -5.87 -0.03 2.46 16 10 C -0.14 -2.69 5.02 -28.55 -0.14 -2.83 16 11 C 0.15 3.01 3.80 -67.19 -0.26 2.76 16 12 H 0.06 1.11 8.20 -51.51 -0.42 0.69 16 13 C -0.13 -2.08 6.03 -25.59 -0.15 -2.23 16 14 C -0.13 -2.17 5.73 -26.66 -0.15 -2.32 16 15 C 0.14 2.80 2.31 -67.74 -0.16 2.64 16 16 H 0.13 3.00 5.61 -51.74 -0.29 2.71 16 17 C 0.10 1.99 5.32 -2.52 -0.01 1.98 16 18 N -0.58 -13.06 2.34 -156.16 -0.37 -13.43 16 19 C -0.19 -4.92 10.17 -14.97 -0.15 -5.07 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C 0.00 -0.09 3.58 -17.43 -0.06 -0.16 16 22 N -0.92 -22.70 8.29 55.49 0.46 -22.24 16 23 Si 0.90 20.77 29.56 -169.99 -5.02 15.74 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 28 H 0.06 0.83 6.46 -51.93 -0.34 0.49 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 32 H 0.05 0.88 6.34 -51.93 -0.33 0.55 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.13 2.88 2.22 -51.93 -0.12 2.77 16 35 H 0.06 1.12 7.37 -51.68 -0.38 0.74 16 36 H 0.06 1.01 5.74 -51.94 -0.30 0.71 16 37 H 0.06 1.22 8.16 -51.79 -0.42 0.80 16 38 H 0.05 0.80 8.13 -51.69 -0.42 0.38 16 39 H 0.06 0.91 8.17 -51.74 -0.42 0.49 16 40 H 0.06 0.83 7.77 -51.77 -0.40 0.42 16 41 H 0.05 0.83 6.44 -51.90 -0.33 0.50 16 42 H 0.06 0.94 8.16 -51.78 -0.42 0.51 16 43 H 0.03 0.61 7.87 -51.88 -0.41 0.20 16 44 H 0.10 2.22 3.46 -51.88 -0.18 2.04 16 45 H 0.25 6.23 8.31 -40.82 -0.34 5.89 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -26.81 322.69 -8.46 -35.26 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.22 Total: 5.87 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.81 Total: -0.44 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.35 Total: -47.83 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.81 -8.46 -35.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045716874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.591 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds